Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017540.1

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Reverse (-)

3063 .. 3626

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017540.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcattttggacataatcaaatatcagtactagtgaatggacatgtgtgcaaggaccccaagctagttgtcgccgatgacttcttcttcagtggacttcacctagcaggcaacacatcaaaccctgccggttcacgtgtgacccctgcaaacgtagcccagattccaggacttaatactcttggtatctcccttgttcgtatcgactatgcaccatggggcatcaatgctccacacactcatcctagagccactgaagtcctaacagtcctagaagggagcctccaagtgggttttgtcacctccaaccctgaaaacagacttatcacaaaggtgcttcagaagggcgatgtgtttgtgttcccagtaggacttgtgcatttccagcacaatgttggaaatgttaatgcggtcgccattgcagctctgagcagccaaaatccaggtgctattaccattgccaatgcagtgtttggatcaaagcctgccatttctgctgatgttcttgcgaaggcattccaagtcgacaaggacacaatctacgatttccagtccaagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

187

Amino Acids

19.88

Weight (kDa)

7.1

Isoelectric Point (pI)

19.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	525
AciI	CCGC	1 cut(s)	410
AclWI	GGATC	1 cut(s)	484
AcuI	CTGAAG	3 cut(s)	73, 276, 323
AcvI	CACGTG	1 cut(s)	137
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	1 cut(s)	289
AflIII	ACRYGT	2 cut(s)	43, 136
AhlI	ACTAGT	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	166, 442
AleI	CACNNNNGTG	1 cut(s)	332
AluBI	AGCT	2 cut(s)	64, 425
AluI	AGCT	2 cut(s)	64, 425
AlwI	GGATC	1 cut(s)	484
ApeKI	GCWGC	2 cut(s)	422, 432
Asp700I	GAANNNNTTC	1 cut(s)	515
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	92, 292
AvaII	GGWCC	1 cut(s)	55
BbrPI	CACGTG	1 cut(s)	137
BbvI	GCAGC	2 cut(s)	434, 444
BciT130I	CCWGG	2 cut(s)	168, 444
BcuI	ACTAGT	1 cut(s)	31
BfaI	CTAG	6 cut(s)	32, 65, 104, 246, 272, 562
BisI	GCNGC	2 cut(s)	423, 433
BlsI	GCNGC	2 cut(s)	424, 434
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	168, 444
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	57, 281
BmrFI	CCNGG	2 cut(s)	168, 444
BmrI	ACTGGG	1 cut(s)	359
BmsI	GCATC	1 cut(s)	231
BmuI	ACTGGG	1 cut(s)	359
BsaAI	YACGTR	1 cut(s)	137
BsaJI	CCNNGG	1 cut(s)	215
Bsc4I	CCNNNNNNNGG	1 cut(s)	289
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	2 cut(s)	365, 550
Bse3DI	GCAATG	2 cut(s)	417, 456
BseBI	CCWGG	2 cut(s)	168, 444
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	1 cut(s)	241
BseLI	CCNNNNNNNGG	1 cut(s)	289
BseMI	GCAATG	2 cut(s)	417, 456
BseMII	CTCAG	1 cut(s)	419
BseNI	ACTGG	2 cut(s)	365, 550
BseXI	GCAGC	2 cut(s)	434, 444
Bsh1285I	CGRYCG	1 cut(s)	414
BsiEI	CGRYCG	1 cut(s)	414
BsiSI	CCGG	1 cut(s)	129
BslI	CCNNNNNNNGG	1 cut(s)	289
BsmI	GAATGC	1 cut(s)	515
Bsp143I	GATC	1 cut(s)	476
Bsp19I	CCATGG	1 cut(s)	215
BspACI	CCGC	1 cut(s)	410
BspCNI	CTCAG	1 cut(s)	420
BspLI	GGNNCC	2 cut(s)	57, 281
BspPI	GGATC	1 cut(s)	484
BsrDI	GCAATG	2 cut(s)	417, 456
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	2 cut(s)	365, 550
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	1 cut(s)	476
BssT1I	CCWWGG	1 cut(s)	215
Bst2UI	CCWGG	2 cut(s)	168, 444
Bst4CI	ACNGT	1 cut(s)	268
BstBAI	YACGTR	1 cut(s)	137
BstC8I	GCNNGC	2 cut(s)	109, 486
BstDEI	CTNAG	1 cut(s)	428
BstDSI	CCRYGG	1 cut(s)	215
BstF5I	GGATG	1 cut(s)	241
BstKTI	GATC	1 cut(s)	479
BstMBI	GATC	1 cut(s)	476
BstMCI	CGRYCG	1 cut(s)	414
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 385, 422, 494
BstNI	CCWGG	2 cut(s)	168, 444
BstNSI	RCATGY	1 cut(s)	47
BstSCI	CCNGG	2 cut(s)	166, 442
BstV1I	GCAGC	2 cut(s)	434, 444
BtgI	CCRYGG	1 cut(s)	215
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	241
BtsI	GCAGTG	1 cut(s)	474
BtsIMutI	CAGTG	3 cut(s)	97, 252, 474
Cac8I	GCNNGC	2 cut(s)	109, 486
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	55
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	2 cut(s)	44, 216
CviJI	RGCY	7 cut(s)	64, 158, 251, 282, 425, 435, 484
CviKI_1	RGCY	7 cut(s)	64, 158, 251, 282, 425, 435, 484
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	1 cut(s)	478
DpnII	GATC	1 cut(s)	476
Eco130I	CCWWGG	1 cut(s)	215
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	3 cut(s)	73, 276, 323
Eco72I	CACGTG	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	166, 442
EcoT14I	CCWWGG	1 cut(s)	215
EcoT22I	ATGCAT	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	215
FaeI	CATG	2 cut(s)	47, 219
FaiI	YATR	4 cut(s)	15, 45, 210, 217
FatI	CATG	2 cut(s)	43, 215
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	2 cut(s)	423, 433
FokI	GGATG	1 cut(s)	228
Fsp4HI	GCNGC	2 cut(s)	423, 433
FspBI	CTAG	6 cut(s)	32, 65, 104, 246, 272, 562
GluI	GCNGC	2 cut(s)	423, 433
HapII	CCGG	1 cut(s)	129
Hin1II	CATG	2 cut(s)	47, 219
HincII	GTYRAC	1 cut(s)	526
HindII	GTYRAC	1 cut(s)	526
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	129
HphI	GGTGA	2 cut(s)	92, 292
Hpy166II	GTNNAC	3 cut(s)	95, 134, 526
Hpy188I	TCNGA	2 cut(s)	342, 429
Hpy8I	GTNNAC	3 cut(s)	95, 134, 526
HpyAV	CCTTC	3 cut(s)	269, 337, 505
HpyCH4III	ACNGT	1 cut(s)	268
HpyCH4IV	ACGT	2 cut(s)	136, 153
HpyCH4V	TGCA	7 cut(s)	4, 51, 149, 212, 379, 422, 467
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 385, 422, 494
HpyF3I	CTNAG	1 cut(s)	428
HpySE526I	ACGT	2 cut(s)	136, 153
Hsp92II	CATG	2 cut(s)	47, 219
Kzo9I	GATC	1 cut(s)	476
LmnI	GCTCC	2 cut(s)	235, 279
Lsp1109I	GCAGC	2 cut(s)	434, 444
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	6 cut(s)	32, 65, 104, 246, 272, 562
MaeII	ACGT	2 cut(s)	136, 153
MaeIII	GTNAC	2 cut(s)	139, 298
MalI	GATC	1 cut(s)	478
MboI	GATC	1 cut(s)	476
MboII	GAAGA	2 cut(s)	76, 79
MmeI	TCCRAC	2 cut(s)	330, 376
MnlI	CCTC	2 cut(s)	293, 313
Mph1103I	ATGCAT	1 cut(s)	6
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	2 cut(s)	174, 405
MslI	CAYNNNNRTG	1 cut(s)	332
MspI	CCGG	1 cut(s)	129
MspR9I	CCNGG	2 cut(s)	168, 444
Mva1269I	GAATGC	1 cut(s)	515
MvaI	CCWGG	2 cut(s)	168, 444
MwoI	GCNNNNNNNGC	4 cut(s)	155, 385, 422, 494
NcoI	CCATGG	1 cut(s)	215
NdeII	GATC	1 cut(s)	476
NlaIII	CATG	2 cut(s)	47, 219
NlaIV	GGNNCC	2 cut(s)	57, 281
NmuCI	GTSAC	2 cut(s)	139, 298
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	47
OliI	CACNNNNGTG	1 cut(s)	332
PciI	ACATGT	1 cut(s)	43
PctI	GAATGC	1 cut(s)	515
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	1 cut(s)	163
PfoI	TCCNGGA	1 cut(s)	166
PkrI	GCNGC	2 cut(s)	424, 434
PmaCI	CACGTG	1 cut(s)	137
PmlI	CACGTG	1 cut(s)	137
Ppu21I	YACGTR	1 cut(s)	137
PpuMI	RGGWCCY	1 cut(s)	55
PscI	ACATGT	1 cut(s)	43
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	166, 442
PspCI	CACGTG	1 cut(s)	137
PspGI	CCWGG	2 cut(s)	166, 442
PspN4I	GGNNCC	2 cut(s)	57, 281
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	332
SalI	GTCGAC	1 cut(s)	524
SaqAI	TTAA	2 cut(s)	174, 405
SatI	GCNGC	2 cut(s)	423, 433
Sau3AI	GATC	1 cut(s)	476
Sau96I	GGNCC	1 cut(s)	55
ScaI	AGTACT	1 cut(s)	30
ScrFI	CCNGG	2 cut(s)	168, 444
SetI	ASST	8 cut(s)	66, 105, 139, 156, 305, 336, 427, 448
SfaNI	GCATC	1 cut(s)	231
SinI	GGWCC	1 cut(s)	55
SmiMI	CAYNNNNRTG	1 cut(s)	332
SpeI	ACTAGT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	410
SspMI	CTAG	6 cut(s)	32, 65, 104, 246, 272, 562
StyD4I	CCNGG	2 cut(s)	166, 442
StyI	CCWWGG	1 cut(s)	215
TaaI	ACNGT	1 cut(s)	268
TaiI	ACGT	2 cut(s)	139, 156
TaqI	TCGA	2 cut(s)	204, 525
TatI	WGTACW	1 cut(s)	28
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	2 cut(s)	174, 405
Tru9I	TTAA	2 cut(s)	174, 405
TscAI	CASTG	3 cut(s)	97, 259, 474
TseFI	GTSAC	2 cut(s)	139, 298
TseI	GCWGC	2 cut(s)	422, 432
Tsp45I	GTSAC	2 cut(s)	139, 298
TspRI	CASTG	3 cut(s)	97, 259, 474
VpaK11BI	GGWCC	1 cut(s)	55
XceI	RCATGY	1 cut(s)	47
XcmI	CCANNNNNNNNNTGG	1 cut(s)	392
XmiI	GTMKAC	1 cut(s)	525
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	6 cut(s)	32, 65, 104, 246, 272, 562
ZrmI	AGTACT	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.