Rmu_sc0002711.1_g000013

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002711.1
OG0000812
Physical Location & Seq
Reverse (-)
83735 .. 84523
789 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002711.1_g000013.1.cds

Sequence Viewer

Length: 648 bp
atggcctcgcagtttctattgttagcatgccttgctataacagcttccattgctctggcatctgacccaagttctcttcaggatttctgtgtggctgatcgatcaacctcagtactagtgaatggacaagtgtgcaaggaccccaagctagttgtcgccgatgacttcttcttcagtggacttcacctagcaggcaacacatcaaaccctgccggttcacgtgtgacccctgcaaacgtagcccagattccaggacttaatactcttggtatctcccttgttcgtatcgactatgcaccatggggcatcaatgccccacacactcatcctagagccactgaagtcctaacagtcctagaagggagcctccaagtgggttttgtcacctccaaccctgaaaacagacttatcacaaaggtgcttcagaagggcgatgtgtttgtgttcccagtaggacttgtgcatttccagcacaatgttggaaatgttaatgcggtcgccattgcagctctgagcagccaaaatccaggtgctattaccattgccaatgcagtgtttggatcaaagcctgccatttctgctgatgttcttgcaaaggcattccaagtcgacaaggacacaatctacgatttccagtccaagttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

215

Amino Acids

22.62

Weight (kDa)

6.16

Isoelectric Point (pI)

24.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 609
AciI CCGC 1 cut(s) 494
AclWI GGATC 1 cut(s) 568
AcuI CTGAAG 4 cut(s) 62, 157, 360, 407
AcvI CACGTG 1 cut(s) 221
AfaI GTAC 1 cut(s) 114
AfiI CCNNNNNNNGG 1 cut(s) 373
AflIII ACRYGT 1 cut(s) 220
AhlI ACTAGT 1 cut(s) 115
AjnI CCWGG 2 cut(s) 250, 526
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 3 cut(s) 44, 148, 509
AluI AGCT 3 cut(s) 44, 148, 509
AlwI GGATC 1 cut(s) 568
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 506, 516
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 2 cut(s) 176, 376
AvaII GGWCC 1 cut(s) 139
BbrPI CACGTG 1 cut(s) 221
BbvI GCAGC 2 cut(s) 518, 528
BciT130I CCWGG 2 cut(s) 252, 528
BcuI ACTAGT 1 cut(s) 115
BfaI CTAG 6 cut(s) 116, 149, 188, 330, 356, 646
BisI GCNGC 2 cut(s) 507, 517
BlsI GCNGC 2 cut(s) 508, 518
BmcAI AGTACT 1 cut(s) 114
Bme1390I CCNGG 2 cut(s) 252, 528
Bme18I GGWCC 1 cut(s) 139
BmgT120I GGNCC 1 cut(s) 139
BmiI GGNNCC 2 cut(s) 141, 365
BmrFI CCNGG 2 cut(s) 252, 528
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 2 cut(s) 68, 315
BmuI ACTGGG 1 cut(s) 443
Bsa29I ATCGAT 1 cut(s) 100
BsaAI YACGTR 1 cut(s) 221
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 373
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 449, 634
Bse3DI GCAATG 3 cut(s) 48, 501, 540
BseBI CCWGG 2 cut(s) 252, 528
BseCI ATCGAT 1 cut(s) 100
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 1 cut(s) 373
BseMI GCAATG 3 cut(s) 48, 501, 540
BseMII CTCAG 2 cut(s) 123, 503
BseNI ACTGG 2 cut(s) 449, 634
BseXI GCAGC 2 cut(s) 518, 528
Bsh1285I CGRYCG 1 cut(s) 498
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 100
BsiEI CGRYCG 1 cut(s) 498
BsiSI CCGG 1 cut(s) 213
BslI CCNNNNNNNGG 1 cut(s) 373
BsmI GAATGC 1 cut(s) 599
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 3 cut(s) 97, 101, 560
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 1 cut(s) 494
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 2 cut(s) 122, 504
BspDI ATCGAT 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 141, 365
BspPI GGATC 1 cut(s) 568
BsrDI GCAATG 3 cut(s) 48, 501, 540
BsrFI RCCGGY 1 cut(s) 212
BsrI ACTGG 2 cut(s) 449, 634
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 3 cut(s) 97, 101, 560
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 2 cut(s) 252, 528
Bst4CI ACNGT 1 cut(s) 352
Bst6I CTCTTC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 32
BstBAI YACGTR 1 cut(s) 221
BstC8I GCNNGC 3 cut(s) 28, 193, 570
BstDEI CTNAG 2 cut(s) 109, 512
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 3 cut(s) 100, 104, 563
BstMBI GATC 3 cut(s) 97, 101, 560
BstMCI CGRYCG 1 cut(s) 498
BstMWI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 239, 469, 506, 578
BstNI CCWGG 2 cut(s) 252, 528
BstNSI RCATGY 1 cut(s) 30
BstSCI CCNGG 2 cut(s) 250, 526
BstV1I GCAGC 2 cut(s) 518, 528
BstXI CCANNNNNNTGG 1 cut(s) 55
Bsu15I ATCGAT 1 cut(s) 100
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 100
BtgI CCRYGG 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 447
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 3 cut(s) 181, 336, 558
Cac8I GCNNGC 3 cut(s) 28, 193, 570
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 139
ClaI ATCGAT 1 cut(s) 100
Csp6I GTAC 1 cut(s) 113
CviAII CATG 2 cut(s) 27, 300
CviQI GTAC 1 cut(s) 113
DdeI CTNAG 2 cut(s) 109, 512
DpnI GATC 3 cut(s) 99, 103, 562
DpnII GATC 3 cut(s) 97, 101, 560
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 1 cut(s) 139
Eco57I CTGAAG 4 cut(s) 62, 157, 360, 407
Eco72I CACGTG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 250, 526
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 2 cut(s) 30, 303
FaiI YATR 4 cut(s) 28, 38, 294, 301
FatI CATG 2 cut(s) 26, 299
FblI GTMKAC 1 cut(s) 609
Fnu4HI GCNGC 2 cut(s) 507, 517
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 2 cut(s) 507, 517
FspBI CTAG 6 cut(s) 116, 149, 188, 330, 356, 646
GluI GCNGC 2 cut(s) 507, 517
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 213
Hin1II CATG 2 cut(s) 30, 303
HincII GTYRAC 1 cut(s) 610
HindII GTYRAC 1 cut(s) 610
HinfI GANTC 1 cut(s) 247
HpaII CCGG 1 cut(s) 213
HphI GGTGA 2 cut(s) 176, 376
Hpy166II GTNNAC 3 cut(s) 179, 218, 610
Hpy188I TCNGA 3 cut(s) 64, 426, 513
Hpy188III TCNNGA 1 cut(s) 80
Hpy8I GTNNAC 3 cut(s) 179, 218, 610
HpyAV CCTTC 2 cut(s) 353, 421
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 2 cut(s) 220, 237
HpyCH4V TGCA 7 cut(s) 135, 233, 296, 463, 506, 551, 593
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 239, 469, 506, 578
HpyF3I CTNAG 2 cut(s) 109, 512
HpySE526I ACGT 2 cut(s) 220, 237
Hsp92II CATG 2 cut(s) 30, 303
Kzo9I GATC 3 cut(s) 97, 101, 560
LmnI GCTCC 1 cut(s) 363
Lsp1109I GCAGC 2 cut(s) 518, 528
LweI GCATC 2 cut(s) 68, 315
MaeI CTAG 6 cut(s) 116, 149, 188, 330, 356, 646
MaeII ACGT 2 cut(s) 220, 237
MaeIII GTNAC 2 cut(s) 223, 382
MalI GATC 3 cut(s) 99, 103, 562
MboI GATC 3 cut(s) 97, 101, 560
MboII GAAGA 3 cut(s) 68, 160, 163
MmeI TCCRAC 2 cut(s) 414, 460
MnlI CCTC 4 cut(s) 16, 118, 377, 397
MseI TTAA 2 cut(s) 258, 489
MslI CAYNNNNRTG 1 cut(s) 416
MspI CCGG 1 cut(s) 213
MspR9I CCNGG 2 cut(s) 252, 528
Mva1269I GAATGC 1 cut(s) 599
MvaI CCWGG 2 cut(s) 252, 528
MwoI GCNNNNNNNGC 7 cut(s) 32, 41, 50, 239, 469, 506, 578
NcoI CCATGG 1 cut(s) 299
NdeII GATC 3 cut(s) 97, 101, 560
NlaIII CATG 2 cut(s) 30, 303
NlaIV GGNNCC 2 cut(s) 141, 365
NmuCI GTSAC 2 cut(s) 223, 382
NspI RCATGY 1 cut(s) 30
OliI CACNNNNGTG 1 cut(s) 416
PaeI GCATGC 1 cut(s) 30
PctI GAATGC 1 cut(s) 599
PfeI GAWTC 1 cut(s) 247
PfoI TCCNGGA 1 cut(s) 250
PkrI GCNGC 2 cut(s) 508, 518
PmaCI CACGTG 1 cut(s) 221
PmlI CACGTG 1 cut(s) 221
Ppu21I YACGTR 1 cut(s) 221
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 250, 526
PspCI CACGTG 1 cut(s) 221
PspGI CCWGG 2 cut(s) 250, 526
PspN4I GGNNCC 2 cut(s) 141, 365
PspPI GGNCC 1 cut(s) 139
PspPPI RGGWCCY 1 cut(s) 139
RsaI GTAC 1 cut(s) 114
RsaNI GTAC 1 cut(s) 113
RseI CAYNNNNRTG 1 cut(s) 416
SalI GTCGAC 1 cut(s) 608
SaqAI TTAA 2 cut(s) 258, 489
SatI GCNGC 2 cut(s) 507, 517
Sau3AI GATC 3 cut(s) 97, 101, 560
Sau96I GGNCC 1 cut(s) 139
ScaI AGTACT 1 cut(s) 114
ScrFI CCNGG 2 cut(s) 252, 528
SfaNI GCATC 2 cut(s) 68, 315
SinI GGWCC 1 cut(s) 139
SmiMI CAYNNNNRTG 1 cut(s) 416
SpeI ACTAGT 1 cut(s) 115
SphI GCATGC 1 cut(s) 30
SsiI CCGC 1 cut(s) 494
SspMI CTAG 6 cut(s) 116, 149, 188, 330, 356, 646
StyD4I CCNGG 2 cut(s) 250, 526
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 2 cut(s) 223, 240
TaqI TCGA 3 cut(s) 100, 288, 609
TatI WGTACW 1 cut(s) 112
TfiI GAWTC 1 cut(s) 247
Tru1I TTAA 2 cut(s) 258, 489
Tru9I TTAA 2 cut(s) 258, 489
TscAI CASTG 3 cut(s) 181, 343, 558
TseFI GTSAC 2 cut(s) 223, 382
TseI GCWGC 2 cut(s) 506, 516
Tsp45I GTSAC 2 cut(s) 223, 382
TspRI CASTG 3 cut(s) 181, 343, 558
VpaK11BI GGWCC 1 cut(s) 139
XceI RCATGY 1 cut(s) 30
XcmI CCANNNNNNNNNTGG 1 cut(s) 476
XmiI GTMKAC 1 cut(s) 609
XspI CTAG 6 cut(s) 116, 149, 188, 330, 356, 646
ZrmI AGTACT 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.