Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Reverse (-)

4781549 .. 4782317

Gene Structure 769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCTCTAAGTTTCTCTTGTTGGCATTGCTCGCCATAACTTCTTCCATTGCTTCGGCATCTGACCCGAGTTCTCTTCAGGATTTCTGCGTGGCTGACGCAAAGAACTCAGTACTTGTGAATGGTCTTGTCTGCAAGGATCCTAAGCTTGTTGAAGCCAATGACTTCTTCTTCAGTGGGCTTCATCTAGCAGGCAACACATCAAATGCAGTTGGTTCGAGTGTGACCCCTGTCAACGTAGCCCAAATTGCAGGACTTAATGCTTTTGGTATCTCTGTTGCCCGTATCGACTATGCACCATGGGGTATTAACCCTCCCCACACACATCCTCGAGCGAGTGAAATTTTGACAGTCCTGGAAGGGAGACTCAAAGTGGGTTTTGTCACTTCCAACCCCGAAAACCGTCTCATCACCAAGGTACTTGAGAAGGGTGATGTGTTTGTGTTCCCTGTTGGTCTCGTGCATTTCCAACAAAATGTGGGATATGGCAATGCAATTGCCATTGCAGCTCTCAGCAGCCAAAATCCAGGTGTCATTACCATTGCAAATGCAGTATTTGGATCAAAGCCCGACATCTCTGCTGATATTCTTGCAAAGGCTTTCCAAGTGGAGAAGAACACAGTCTACAATTTCCAGTCGAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

216

Amino Acids

22.69

Weight (kDa)

6.9

Isoelectric Point (pI)

16.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	624
AclWI	GGATC	3 cut(s)	134, 147, 568
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	2 cut(s)	62, 157
AfaI	GTAC	2 cut(s)	114, 420
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	354, 526
AjuI	GAANNNNNNNTTGG	2 cut(s)	152, 184
AluBI	AGCT	2 cut(s)	148, 509
AluI	AGCT	2 cut(s)	148, 509
Alw26I	GTCTC	3 cut(s)	358, 410, 461
AlwI	GGATC	3 cut(s)	134, 147, 568
Ama87I	CYCGRG	2 cut(s)	67, 330
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	506, 516
ApoI	RAATTY	1 cut(s)	342
AsuHPI	GGTGA	2 cut(s)	403, 443
AvaI	CYCGRG	2 cut(s)	67, 330
BamHI	GGATCC	1 cut(s)	139
BauI	CACGAG	1 cut(s)	458
BbvI	GCAGC	2 cut(s)	518, 528
BcgI	CGANNNNNNTGC	4 cut(s)	198, 232, 560, 594
BciT130I	CCWGG	2 cut(s)	356, 528
BcoDI	GTCTC	3 cut(s)	358, 410, 461
BfaI	CTAG	1 cut(s)	188
BisI	GCNGC	2 cut(s)	507, 517
BlsI	GCNGC	2 cut(s)	508, 518
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	356, 528
BmeT110I	CYCGRG	2 cut(s)	67, 330
BmiI	GGNNCC	1 cut(s)	141
BmrFI	CCNGG	2 cut(s)	356, 528
BmsI	GCATC	1 cut(s)	68
BoxI	GACNNNNGTC	1 cut(s)	230
Bpu10I	CCTNAGC	1 cut(s)	144
BpuEI	CTTGAG	1 cut(s)	443
BsaI	GGTCTC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	299, 414
Bse1I	ACTGG	1 cut(s)	634
Bse3DI	GCAATG	5 cut(s)	26, 48, 496, 501, 540
BseBI	CCWGG	2 cut(s)	356, 528
BseDI	CCNNGG	2 cut(s)	299, 414
BseGI	GGATG	1 cut(s)	325
BseMI	GCAATG	5 cut(s)	26, 48, 496, 501, 540
BseMII	CTCAG	2 cut(s)	123, 526
BseNI	ACTGG	1 cut(s)	634
BseXI	GCAGC	2 cut(s)	518, 528
BshFI	GGCC	1 cut(s)	5
BsiHKCI	CYCGRG	2 cut(s)	67, 330
BsmAI	GTCTC	3 cut(s)	358, 410, 461
BsmBI	CGTCTC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	5
Bso31I	GGTCTC	1 cut(s)	461
BsoBI	CYCGRG	2 cut(s)	67, 330
Bsp143I	GATC	2 cut(s)	139, 560
Bsp19I	CCATGG	1 cut(s)	299
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	122, 525
BspLI	GGNNCC	1 cut(s)	141
BspPI	GGATC	3 cut(s)	134, 147, 568
BspTNI	GGTCTC	1 cut(s)	461
BsrDI	GCAATG	5 cut(s)	26, 48, 496, 501, 540
BsrI	ACTGG	1 cut(s)	634
BssECI	CCNNGG	2 cut(s)	299, 414
BssMI	GATC	2 cut(s)	139, 560
BssSI	CACGAG	1 cut(s)	458
BssT1I	CCWWGG	2 cut(s)	299, 414
Bst2BI	CACGAG	1 cut(s)	458
Bst2UI	CCWGG	2 cut(s)	356, 528
Bst4CI	ACNGT	3 cut(s)	352, 404, 622
Bst6I	CTCTTC	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	33, 193
BstDEI	CTNAG	4 cut(s)	9, 109, 144, 512
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	325
BstKTI	GATC	2 cut(s)	142, 563
BstMAI	GTCTC	3 cut(s)	358, 410, 461
BstMBI	GATC	2 cut(s)	139, 560
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 248, 506
BstNI	CCWGG	2 cut(s)	356, 528
BstPAI	GACNNNNGTC	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	354, 526
BstV1I	GCAGC	2 cut(s)	518, 528
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	325
BtsIMutI	CAGTG	1 cut(s)	181
Cac8I	GCNNGC	2 cut(s)	33, 193
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	113, 419
CviAII	CATG	1 cut(s)	300
CviQI	GTAC	2 cut(s)	113, 419
DdeI	CTNAG	4 cut(s)	9, 109, 144, 512
DpnI	GATC	2 cut(s)	141, 562
DpnII	GATC	2 cut(s)	139, 560
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	2 cut(s)	299, 414
Eco31I	GGTCTC	1 cut(s)	461
Eco57I	CTGAAG	2 cut(s)	62, 157
Eco88I	CYCGRG	2 cut(s)	67, 330
EcoRII	CCWGG	2 cut(s)	354, 526
EcoT14I	CCWWGG	2 cut(s)	299, 414
ErhI	CCWWGG	2 cut(s)	299, 414
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	1 cut(s)	303
FaiI	YATR	4 cut(s)	38, 294, 301, 486
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	1 cut(s)	299
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	2 cut(s)	507, 517
FokI	GGATG	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	507, 517
FspBI	CTAG	1 cut(s)	188
GluI	GCNGC	2 cut(s)	507, 517
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	107
Hin1II	CATG	1 cut(s)	303
HincII	GTYRAC	1 cut(s)	235
HindII	GTYRAC	1 cut(s)	235
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	366
HphI	GGTGA	2 cut(s)	403, 443
Hpy166II	GTNNAC	2 cut(s)	235, 625
Hpy188I	TCNGA	1 cut(s)	64
Hpy188III	TCNNGA	1 cut(s)	80
Hpy8I	GTNNAC	2 cut(s)	235, 625
HpyAV	CCTTC	2 cut(s)	353, 421
HpyCH4III	ACNGT	3 cut(s)	352, 404, 622
HpyCH4IV	ACGT	1 cut(s)	237
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 248, 506
HpyF3I	CTNAG	4 cut(s)	9, 109, 144, 512
HpySE526I	ACGT	1 cut(s)	237
Hsp92II	CATG	1 cut(s)	303
Kzo9I	GATC	2 cut(s)	139, 560
LpnPI	CCDG	9 cut(s)	65, 177, 237, 243, 341, 368, 462, 513, 540
Lsp1109I	GCAGC	2 cut(s)	518, 528
LweI	GCATC	1 cut(s)	68
MaeI	CTAG	1 cut(s)	188
MaeII	ACGT	1 cut(s)	237
MaeIII	GTNAC	2 cut(s)	223, 382
MalI	GATC	2 cut(s)	141, 562
MboI	GATC	2 cut(s)	139, 560
MboII	GAAGA	5 cut(s)	36, 68, 160, 163, 625
MfeI	CAATTG	1 cut(s)	495
MflI	RGATCY	1 cut(s)	139
MluCI	AATT	4 cut(s)	246, 342, 495, 628
MlyI	GAGTC	1 cut(s)	360
MmeI	TCCRAC	2 cut(s)	414, 493
MnlI	CCTC	3 cut(s)	16, 324, 339
MseI	TTAA	2 cut(s)	258, 309
MspR9I	CCNGG	2 cut(s)	356, 528
MunI	CAATTG	1 cut(s)	495
MvaI	CCWGG	2 cut(s)	356, 528
MwoI	GCNNNNNNNGC	3 cut(s)	32, 248, 506
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	2 cut(s)	139, 560
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	1 cut(s)	141
NmuCI	GTSAC	2 cut(s)	223, 382
PaeR7I	CTCGAG	1 cut(s)	330
PfoI	TCCNGGA	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	508, 518
PleI	GAGTC	1 cut(s)	360
PpsI	GAGTC	1 cut(s)	360
PshAI	GACNNNNGTC	1 cut(s)	230
Psp6I	CCWGG	2 cut(s)	354, 526
PspGI	CCWGG	2 cut(s)	354, 526
PspN4I	GGNNCC	1 cut(s)	141
PspXI	VCTCGAGB	1 cut(s)	330
PsrI	GAACNNNNNNTAC	2 cut(s)	608, 640
PsuI	RGATCY	1 cut(s)	139
RsaI	GTAC	2 cut(s)	114, 420
RsaNI	GTAC	2 cut(s)	113, 419
SaqAI	TTAA	2 cut(s)	258, 309
SatI	GCNGC	2 cut(s)	507, 517
Sau3AI	GATC	2 cut(s)	139, 560
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	1 cut(s)	360
ScrFI	CCNGG	2 cut(s)	356, 528
SetI	ASST	5 cut(s)	150, 240, 420, 511, 532
SfaNI	GCATC	1 cut(s)	68
Sfr274I	CTCGAG	1 cut(s)	330
SlaI	CTCGAG	1 cut(s)	330
SmlI	CTYRAG	2 cut(s)	330, 422
SmoI	CTYRAG	2 cut(s)	330, 422
Sse9I	AATT	4 cut(s)	246, 342, 495, 628
SspMI	CTAG	1 cut(s)	188
StyD4I	CCNGG	2 cut(s)	354, 526
StyI	CCWWGG	2 cut(s)	299, 414
TaaI	ACNGT	3 cut(s)	352, 404, 622
TaiI	ACGT	1 cut(s)	240
TaqI	TCGA	4 cut(s)	218, 288, 331, 638
TasI	AATT	4 cut(s)	246, 342, 495, 628
TatI	WGTACW	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	258, 309
Tru9I	TTAA	2 cut(s)	258, 309
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	223, 382
TseI	GCWGC	2 cut(s)	506, 516
Tsp45I	GTSAC	2 cut(s)	223, 382
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	342
XhoI	CTCGAG	1 cut(s)	330
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	1 cut(s)	188
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.