Rorug05G0034700

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000812
Physical Location & Seq
Forward (+)
2426795 .. 2429901
3107 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0034700.1

Sequence Viewer

Length: 1413 bp
ATGAAGAACCATAAGGTTGCATTGTTAACTGTTTCCCTTTCCATCCTCATCAATTTCAGTCCTTCCCAAGCAAAACAAACTCAACCCATCTCAGATGTCCTTAGAATTGACAACATTCTCAACAACACGTATGAATGGTTGAGCCTCTATAGAAAACCCCATGAAACCCAGCTCGAGTTGTCTACCCCACTTGTGGTGGCAGGAGTCTTGTGCTTCATAGCTGCCTCTATATCCAGTGCTGGTGGGATTGGTGGTGGTGGGTTGTTCATACCAATACTGACCCTAGTGGCAGGTCTTGACCTCAGAATAGCCTCTGGTCTCTCAGCTTTCATGGTCACCGGAGGCTCGGTCGCGAATGTCATGTACAACTTGTGCATGAAAGGTAGCACCAAATTTGGTGGCAAGTCTCTGATTGACTATGACATAGCACTTCTATCAGAGCCATGTATGTTACTAGGAGTAAGTCTAGGAGTGATTTGCAACCTTGTATTCCCAGAGTGGCTGATCACTATACTCTTTGCGCTTTTCCTTGCTTGGACTACCTCAATGAGCTGTAGAAATGGGCTGGTGTATTGGAAAATGGAATCAGAAGTGATGAAGATGAGGAATGGTTGTGAGAGACTGGAAAATGGGTTGACGAAAGACAGGGCAGGCGATGAAACAGAAGGGAACAAAGGAGTTACAGAACCGCTTTTAGGAGTAAGAACAGAAGAAAACTGCATGCTAAGATTTCCATGGATGAAAATGGGGGTATTAATTCTGGTCTGGTGCTCTTTCTGCCTAGTCTACCTTCTTCGTGGAAATCGATATGGACAGGGCATTATACCAATAGAGCCTTGTGGAGTGGGATATTGGGTTCTCTCATCTTCCCAAATTCCTCTTGCCATAGTTTATACAGCCTGGATTCTATGCAGAAAAGAGAATCGTCAACATCATACTTTAAACACCCAAAAGGATATTGAGGAGCTGAACAAAGTTGGACCATCAAACAAGCTAGTTTTCCCACTAATGGCACTATTAGCAGGGATTTTAGGGGGTGTCTTTGGGATTGGAGGTGGAATGCTGATAAGCCCTCTTCTTCTTCAGGTTGGGATAGCGCCTGAGGTAACGGCTGCGACTTGTTCTTTCATGGTGTTCTTCTCATCTTCCATGTCCGCATTTCAGTACTTGTTGTTGGGCATGGAGCATGCAGACACTGCGCTCATCTTCGCCATCACTTGTTTTGTTGCATCACTTCTTGGACTGGTGGTGCTGCAGAGAGCAATCAAAGTTTATGGAAGGGCTTCTCTCATTGTATTCTCAGTTAGCATAGTGATGGCTTTGAGTACAGTTTTGATGACTAGCTTTGGGGCCCTTCATGTATGGAGTGACTATAAATCTGGAAGATACATGGGCTTCAAACTACCATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

470

Amino Acids

51.24

Weight (kDa)

8.46

Isoelectric Point (pI)

35.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 55 - 180 3e-11 Sulfite exporter TauE/SafE
TauE PF01925 293 - 438 4.1e-13 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 281
AccI GTMKAC 2 cut(s) 182, 786
AccII CGCG 1 cut(s) 353
AciI CCGC 2 cut(s) 689, 1155
AcsI RAATTY 2 cut(s) 392, 873
AcuI CTGAAG 1 cut(s) 1067
AfaI GTAC 3 cut(s) 365, 1166, 1327
AfiI CCNNNNNNNGG 3 cut(s) 193, 695, 1009
AflIII ACRYGT 1 cut(s) 126
AgsI TTSAA 1 cut(s) 1399
AjnI CCWGG 1 cut(s) 899
AloI GAACNNNNNNTCC 2 cut(s) 840, 872
AluBI AGCT 7 cut(s) 172, 221, 326, 552, 967, 994, 1344
AluI AGCT 7 cut(s) 172, 221, 326, 552, 967, 994, 1344
Alw21I GWGCWC 1 cut(s) 773
Alw26I GTCTC 3 cut(s) 323, 411, 613
AlwNI CAGNNNCTG 1 cut(s) 1196
Ama87I CYCGRG 1 cut(s) 173
AoxI GGCC 1 cut(s) 1350
ApaI GGGCCC 1 cut(s) 1354
ApeKI GCWGC 3 cut(s) 221, 1112, 1252
ApoI RAATTY 2 cut(s) 392, 873
AseI ATTAAT 1 cut(s) 755
Asp700I GAANNNNTTC 1 cut(s) 1282
AspLEI GCGC 3 cut(s) 523, 1099, 1201
AspS9I GGNCC 3 cut(s) 980, 1350, 1351
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 173
AvaII GGWCC 1 cut(s) 980
AxyI CCTNAGG 1 cut(s) 1101
BaeGI GKGCMC 1 cut(s) 1354
BanII GRGCYC 1 cut(s) 1354
Bbv12I GWGCWC 1 cut(s) 773
BbvI GCAGC 3 cut(s) 208, 1099, 1239
BccI CCATC 5 cut(s) 50, 95, 991, 1220, 1309
BceAI ACGGC 1 cut(s) 1125
BciT130I CCWGG 1 cut(s) 901
BclI TGATCA 1 cut(s) 504
BcoDI GTCTC 3 cut(s) 323, 411, 613
BfaI CTAG 6 cut(s) 284, 455, 467, 782, 995, 1341
BfmI CTRYAG 3 cut(s) 148, 553, 1253
BfoI RGCGCY 1 cut(s) 1100
BfuAI ACCTGC 1 cut(s) 281
BisI GCNGC 3 cut(s) 222, 1113, 1253
BlsI GCNGC 3 cut(s) 223, 1114, 1254
BmcAI AGTACT 1 cut(s) 1166
Bme1390I CCNGG 1 cut(s) 901
Bme18I GGWCC 1 cut(s) 980
BmeT110I CYCGRG 1 cut(s) 173
BmgT120I GGNCC 3 cut(s) 980, 1350, 1351
BmiI GGNNCC 2 cut(s) 1351, 1352
BmrFI CCNGG 1 cut(s) 901
BmsI GCATC 1 cut(s) 1238
Bsa29I ATCGAT 1 cut(s) 805
BsaAI YACGTR 1 cut(s) 129
BsaI GGTCTC 1 cut(s) 323
BsaJI CCNNGG 1 cut(s) 734
BsaWI WCCGGW 1 cut(s) 338
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 193, 695, 1009
Bse1I ACTGG 3 cut(s) 234, 627, 1248
Bse21I CCTNAGG 1 cut(s) 1101
BseBI CCWGG 1 cut(s) 901
BseCI ATCGAT 1 cut(s) 805
BseDI CCNNGG 1 cut(s) 734
BseGI GGATG 2 cut(s) 42, 744
BseLI CCNNNNNNNGG 3 cut(s) 193, 695, 1009
BseMII CTCAG 5 cut(s) 105, 316, 336, 1092, 1314
BseNI ACTGG 3 cut(s) 234, 627, 1248
BseRI GAGGAG 1 cut(s) 977
BseSI GKGCMC 1 cut(s) 1354
BseXI GCAGC 3 cut(s) 208, 1099, 1239
BseYI CCCAGC 1 cut(s) 168
Bsh1236I CGCG 1 cut(s) 353
Bsh1285I CGRYCG 1 cut(s) 351
BshFI GGCC 1 cut(s) 1352
BshVI ATCGAT 1 cut(s) 805
BsiEI CGRYCG 1 cut(s) 351
BsiHKAI GWGCWC 1 cut(s) 773
BsiHKCI CYCGRG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 339
BslI CCNNNNNNNGG 3 cut(s) 193, 695, 1009
BsmAI GTCTC 3 cut(s) 323, 411, 613
BsmI GAATGC 1 cut(s) 1065
BsnI GGCC 1 cut(s) 1352
Bso31I GGTCTC 1 cut(s) 323
BsoBI CYCGRG 1 cut(s) 173
Bsp120I GGGCCC 1 cut(s) 1350
Bsp1286I GDGCHC 2 cut(s) 773, 1354
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 1 cut(s) 504
Bsp19I CCATGG 1 cut(s) 734
Bsp68I TCGCGA 1 cut(s) 353
BspACI CCGC 2 cut(s) 689, 1155
BspANI GGCC 1 cut(s) 1352
BspCNI CTCAG 5 cut(s) 104, 315, 335, 1093, 1313
BspDI ATCGAT 1 cut(s) 805
BspFNI CGCG 1 cut(s) 353
BspLI GGNNCC 2 cut(s) 1351, 1352
BspMAI CTGCAG 1 cut(s) 1257
BspMI ACCTGC 1 cut(s) 281
BspTNI GGTCTC 1 cut(s) 323
BsrGI TGTACA 1 cut(s) 363
BsrI ACTGG 3 cut(s) 234, 627, 1248
BssECI CCNNGG 1 cut(s) 734
BssMI GATC 1 cut(s) 504
BssT1I CCWWGG 1 cut(s) 734
Bst2UI CCWGG 1 cut(s) 901
Bst4CI ACNGT 2 cut(s) 31, 1330
Bst6I CTCTTC 1 cut(s) 1080
BstAPI GCANNNNNTGC 1 cut(s) 1196
BstAUI TGTACA 1 cut(s) 363
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 3 cut(s) 652, 722, 1188
BstDEI CTNAG 7 cut(s) 91, 101, 302, 322, 725, 1101, 1300
BstDSI CCRYGG 1 cut(s) 734
BstEII GGTNACC 1 cut(s) 334
BstF5I GGATG 2 cut(s) 42, 744
BstFNI CGCG 1 cut(s) 353
BstH2I RGCGCY 1 cut(s) 1100
BstHHI GCGC 3 cut(s) 523, 1099, 1201
BstKTI GATC 1 cut(s) 507
BstMAI GTCTC 3 cut(s) 323, 411, 613
BstMBI GATC 1 cut(s) 504
BstMCI CGRYCG 1 cut(s) 351
BstMWI GCNNNNNNNGC 3 cut(s) 777, 1019, 1196
BstNI CCWGG 1 cut(s) 901
BstNSI RCATGY 2 cut(s) 724, 1190
BstPI GGTNACC 1 cut(s) 334
BstSCI CCNGG 1 cut(s) 899
BstSFI CTRYAG 3 cut(s) 148, 553, 1253
BstSLI GKGCMC 1 cut(s) 1354
BstUI CGCG 1 cut(s) 353
BstV1I GCAGC 3 cut(s) 208, 1099, 1239
Bsu15I ATCGAT 1 cut(s) 805
Bsu36I CCTNAGG 1 cut(s) 1101
BsuRI GGCC 1 cut(s) 1352
BsuTUI ATCGAT 1 cut(s) 805
BtgI CCRYGG 1 cut(s) 734
BtgZI GCGATG 1 cut(s) 669
BtsCI GGATG 2 cut(s) 42, 744
BtsI GCAGTG 1 cut(s) 1194
BtsIMutI CAGTG 2 cut(s) 241, 1194
BtuMI TCGCGA 1 cut(s) 353
BveI ACCTGC 1 cut(s) 281
Cac8I GCNNGC 3 cut(s) 652, 722, 1188
CaiI CAGNNNCTG 1 cut(s) 1196
CfoI GCGC 3 cut(s) 523, 1099, 1201
Cfr13I GGNCC 3 cut(s) 980, 1350, 1351
ClaI ATCGAT 1 cut(s) 805
Csp6I GTAC 3 cut(s) 364, 1165, 1326
CspCI CAANNNNNGTGG 2 cut(s) 379, 414
CviQI GTAC 3 cut(s) 364, 1165, 1326
DdeI CTNAG 7 cut(s) 91, 101, 302, 322, 725, 1101, 1300
DpnI GATC 1 cut(s) 506
DpnII GATC 1 cut(s) 504
DraI TTTAAA 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 1080
EarI CTCTTC 1 cut(s) 1080
Eco130I CCWWGG 1 cut(s) 734
Eco24I GRGCYC 1 cut(s) 1354
Eco31I GGTCTC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 980
Eco57I CTGAAG 1 cut(s) 1067
Eco81I CCTNAGG 1 cut(s) 1101
Eco88I CYCGRG 1 cut(s) 173
Eco91I GGTNACC 1 cut(s) 334
EcoO109I RGGNCCY 2 cut(s) 1350, 1351
EcoO65I GGTNACC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 899
EcoT14I CCWWGG 1 cut(s) 734
EcoT38I GRGCYC 1 cut(s) 1354
ErhI CCWWGG 1 cut(s) 734
FbaI TGATCA 1 cut(s) 504
FblI GTMKAC 2 cut(s) 182, 786
Fnu4HI GCNGC 3 cut(s) 222, 1113, 1253
FokI GGATG 2 cut(s) 29, 751
FriOI GRGCYC 1 cut(s) 1354
Fsp4HI GCNGC 3 cut(s) 222, 1113, 1253
FspBI CTAG 6 cut(s) 284, 455, 467, 782, 995, 1341
GlaI GCGC 3 cut(s) 522, 1098, 1200
GluI GCNGC 3 cut(s) 222, 1113, 1253
GsaI CCCAGC 1 cut(s) 172
HaeII RGCGCY 1 cut(s) 1100
HaeIII GGCC 1 cut(s) 1352
HapII CCGG 1 cut(s) 339
HhaI GCGC 3 cut(s) 523, 1099, 1201
Hin6I GCGC 3 cut(s) 521, 1097, 1199
HinP1I GCGC 3 cut(s) 521, 1097, 1199
HincII GTYRAC 3 cut(s) 27, 636, 929
HindII GTYRAC 3 cut(s) 27, 636, 929
HinfI GANTC 4 cut(s) 204, 584, 904, 922
HpaI GTTAAC 1 cut(s) 27
HpaII CCGG 1 cut(s) 339
HphI GGTGA 1 cut(s) 328
Hpy166II GTNNAC 5 cut(s) 27, 183, 636, 787, 929
Hpy188I TCNGA 5 cut(s) 94, 305, 411, 439, 589
Hpy188III TCNNGA 3 cut(s) 296, 352, 1380
Hpy8I GTNNAC 5 cut(s) 27, 183, 636, 787, 929
HpyAV CCTTC 5 cut(s) 72, 659, 800, 1272, 1364
HpyCH4III ACNGT 2 cut(s) 31, 1330
HpyCH4IV ACGT 1 cut(s) 128
HpyCH4V TGCA 8 cut(s) 20, 375, 480, 720, 912, 1190, 1229, 1255
HpyF10VI GCNNNNNNNGC 3 cut(s) 777, 1019, 1196
HpyF3I CTNAG 7 cut(s) 91, 101, 302, 322, 725, 1101, 1300
HpySE526I ACGT 1 cut(s) 128
HspAI GCGC 3 cut(s) 521, 1097, 1199
Ksp22I TGATCA 1 cut(s) 504
KspAI GTTAAC 1 cut(s) 27
Kzo9I GATC 1 cut(s) 504
LmnI GCTCC 2 cut(s) 964, 1183
Lsp1109I GCAGC 3 cut(s) 208, 1099, 1239
LweI GCATC 1 cut(s) 1238
MaeI CTAG 6 cut(s) 284, 455, 467, 782, 995, 1341
MaeII ACGT 1 cut(s) 128
MaeIII GTNAC 5 cut(s) 334, 450, 679, 1105, 1367
MalI GATC 1 cut(s) 506
MboI GATC 1 cut(s) 504
MhlI GDGCHC 2 cut(s) 773, 1354
MluCI AATT 5 cut(s) 52, 105, 392, 756, 873
MlyI GAGTC 1 cut(s) 213
MmeI TCCRAC 1 cut(s) 958
MroXI GAANNNNTTC 1 cut(s) 1282
MseI TTAA 4 cut(s) 26, 755, 941, 1411
MslI CAYNNNNRTG 1 cut(s) 1313
MspI CCGG 1 cut(s) 339
MspR9I CCNGG 1 cut(s) 901
Mva1269I GAATGC 1 cut(s) 1065
MvaI CCWGG 1 cut(s) 901
MvnI CGCG 1 cut(s) 353
MwoI GCNNNNNNNGC 3 cut(s) 777, 1019, 1196
NcoI CCATGG 1 cut(s) 734
NdeII GATC 1 cut(s) 504
NlaIV GGNNCC 2 cut(s) 1351, 1352
NmuCI GTSAC 2 cut(s) 334, 1367
NruI TCGCGA 1 cut(s) 353
NspI RCATGY 2 cut(s) 724, 1190
PaeI GCATGC 2 cut(s) 724, 1190
PaeR7I CTCGAG 1 cut(s) 173
PcsI WCGNNNNNNNCGW 1 cut(s) 802
PctI GAATGC 1 cut(s) 1065
PdmI GAANNNNTTC 1 cut(s) 1282
PfeI GAWTC 3 cut(s) 584, 904, 922
PkrI GCNGC 3 cut(s) 223, 1114, 1254
PleI GAGTC 1 cut(s) 212
PpsI GAGTC 1 cut(s) 212
Ppu21I YACGTR 1 cut(s) 129
PshBI ATTAAT 1 cut(s) 755
Psp6I CCWGG 1 cut(s) 899
PspEI GGTNACC 1 cut(s) 334
PspFI CCCAGC 1 cut(s) 168
PspGI CCWGG 1 cut(s) 899
PspN4I GGNNCC 2 cut(s) 1351, 1352
PspOMI GGGCCC 1 cut(s) 1350
PspPI GGNCC 3 cut(s) 980, 1350, 1351
PspXI VCTCGAGB 1 cut(s) 173
PstI CTGCAG 1 cut(s) 1257
PstNI CAGNNNCTG 1 cut(s) 1196
RruI TCGCGA 1 cut(s) 353
RsaI GTAC 3 cut(s) 365, 1166, 1327
RsaNI GTAC 3 cut(s) 364, 1165, 1326
RseI CAYNNNNRTG 1 cut(s) 1313
SaqAI TTAA 4 cut(s) 26, 755, 941, 1411
SatI GCNGC 3 cut(s) 222, 1113, 1253
Sau3AI GATC 1 cut(s) 504
Sau96I GGNCC 3 cut(s) 980, 1350, 1351
ScaI AGTACT 1 cut(s) 1166
SchI GAGTC 1 cut(s) 213
ScrFI CCNGG 1 cut(s) 901
SduI GDGCHC 2 cut(s) 773, 1354
SfaNI GCATC 1 cut(s) 1238
SfcI CTRYAG 3 cut(s) 148, 553, 1253
Sfr274I CTCGAG 1 cut(s) 173
SinI GGWCC 1 cut(s) 980
SlaI CTCGAG 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 1313
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SphI GCATGC 2 cut(s) 724, 1190
Sse9I AATT 5 cut(s) 52, 105, 392, 756, 873
SsiI CCGC 2 cut(s) 689, 1155
SspMI CTAG 6 cut(s) 284, 455, 467, 782, 995, 1341
StyD4I CCNGG 1 cut(s) 899
StyI CCWWGG 1 cut(s) 734
TaaI ACNGT 2 cut(s) 31, 1330
TaiI ACGT 1 cut(s) 131
TaqI TCGA 2 cut(s) 174, 805
TaqII GACCGA 1 cut(s) 337
TasI AATT 5 cut(s) 52, 105, 392, 756, 873
TatI WGTACW 3 cut(s) 363, 1164, 1325
TfiI GAWTC 3 cut(s) 584, 904, 922
Tru1I TTAA 4 cut(s) 26, 755, 941, 1411
Tru9I TTAA 4 cut(s) 26, 755, 941, 1411
TscAI CASTG 2 cut(s) 241, 1201
TseFI GTSAC 2 cut(s) 334, 1367
TseI GCWGC 3 cut(s) 221, 1112, 1252
Tsp45I GTSAC 2 cut(s) 334, 1367
TspRI CASTG 2 cut(s) 241, 1201
VpaK11BI GGWCC 1 cut(s) 980
VspI ATTAAT 1 cut(s) 755
XapI RAATTY 2 cut(s) 392, 873
XceI RCATGY 2 cut(s) 724, 1190
XhoI CTCGAG 1 cut(s) 173
XmiI GTMKAC 2 cut(s) 182, 786
XmnI GAANNNNTTC 1 cut(s) 1282
XspI CTAG 6 cut(s) 284, 455, 467, 782, 995, 1341
ZrmI AGTACT 1 cut(s) 1166
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.