MD10G1248300.v1.1

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0000812
Physical Location & Seq
Forward (+)
34131234 .. 34131446
213 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1248300.v1.1.491

Sequence Viewer

Length: 213 bp
ATGAGTAATTTTTTGCTCCCAGTGTTGCAGAAGGGTGATGTGTTTGTTTTTCGAATTGGACTTGTGCACTATCAGAGAAATGTAGGTTCTGGTAATGCTGTGGCTATTGCAGCTCTCAGCAGCCAAAATCCTGGTGTGGTGATACTTGCCGGTTCTGTTTTTGGGCCCAGTCCTAGCATTGTCAATGACATTCTTGTGAAGGTATTATGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

71

Amino Acids

7.31

Weight (kDa)

9.19

Isoelectric Point (pI)

48.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 8 - 67 3e-11 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AjnI CCWGG 1 cut(s) 130
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
Alw21I GWGCWC 1 cut(s) 69
Alw44I GTGCAC 1 cut(s) 65
AoxI GGCC 1 cut(s) 164
ApaI GGGCCC 1 cut(s) 168
ApaLI GTGCAC 1 cut(s) 65
ApeKI GCWGC 2 cut(s) 110, 120
AspS9I GGNCC 2 cut(s) 164, 165
AsuHPI GGTGA 2 cut(s) 47, 151
AsuII TTCGAA 1 cut(s) 52
BaeGI GKGCMC 2 cut(s) 69, 168
BanII GRGCYC 1 cut(s) 168
Bbv12I GWGCWC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 122, 132
BciT130I CCWGG 1 cut(s) 132
BfaI CTAG 1 cut(s) 174
BisI GCNGC 2 cut(s) 111, 121
BlsI GCNGC 2 cut(s) 112, 122
Bme1390I CCNGG 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 164, 165
BmiI GGNNCC 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 132
BmrI ACTGGG 2 cut(s) 14, 162
BmuI ACTGGG 2 cut(s) 14, 162
Bpu14I TTCGAA 1 cut(s) 52
Bse118I RCCGGY 1 cut(s) 149
Bse1I ACTGG 2 cut(s) 20, 168
BseBI CCWGG 1 cut(s) 132
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 2 cut(s) 20, 168
BseSI GKGCMC 2 cut(s) 69, 168
BseXI GCAGC 2 cut(s) 122, 132
BshFI GGCC 1 cut(s) 166
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 150
BsnI GGCC 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 52
Bsp120I GGGCCC 1 cut(s) 164
Bsp1286I GDGCHC 2 cut(s) 69, 168
BspANI GGCC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 166
BspT104I TTCGAA 1 cut(s) 52
BsrFI RCCGGY 1 cut(s) 149
BsrI ACTGG 2 cut(s) 20, 168
BssAI RCCGGY 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 52
BstDEI CTNAG 1 cut(s) 116
BstMWI GCNNNNNNNGC 1 cut(s) 110
BstNI CCWGG 1 cut(s) 132
BstSCI CCNGG 1 cut(s) 130
BstSLI GKGCMC 2 cut(s) 69, 168
BstV1I GCAGC 2 cut(s) 122, 132
BstXI CCANNNNNNTGG 1 cut(s) 131
BsuRI GGCC 1 cut(s) 166
BtsIMutI CAGTG 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 149
Cfr13I GGNCC 2 cut(s) 164, 165
CviJI RGCY 4 cut(s) 104, 113, 123, 166
CviKI_1 RGCY 4 cut(s) 104, 113, 123, 166
DdeI CTNAG 1 cut(s) 116
Eco24I GRGCYC 1 cut(s) 168
EcoRII CCWGG 1 cut(s) 130
EcoT38I GRGCYC 1 cut(s) 168
FaiI YATR 1 cut(s) 208
Fnu4HI GCNGC 2 cut(s) 111, 121
FriOI GRGCYC 1 cut(s) 168
Fsp4HI GCNGC 2 cut(s) 111, 121
FspBI CTAG 1 cut(s) 174
GluI GCNGC 2 cut(s) 111, 121
HaeIII GGCC 1 cut(s) 166
HapII CCGG 1 cut(s) 150
HpaII CCGG 1 cut(s) 150
HphI GGTGA 2 cut(s) 47, 151
Hpy166II GTNNAC 1 cut(s) 67
Hpy188I TCNGA 1 cut(s) 75
Hpy8I GTNNAC 1 cut(s) 67
HpyAV CCTTC 2 cut(s) 25, 193
HpyCH4V TGCA 3 cut(s) 28, 67, 110
HpyF10VI GCNNNNNNNGC 1 cut(s) 110
HpyF3I CTNAG 1 cut(s) 116
LmnI GCTCC 1 cut(s) 21
LpnPI CCDG 6 cut(s) 33, 75, 117, 144, 163, 181
Lsp1109I GCAGC 2 cut(s) 122, 132
MaeI CTAG 1 cut(s) 174
MhlI GDGCHC 2 cut(s) 69, 168
MluCI AATT 2 cut(s) 7, 54
MslI CAYNNNNRTG 1 cut(s) 194
MspI CCGG 1 cut(s) 150
MspR9I CCNGG 1 cut(s) 132
MvaI CCWGG 1 cut(s) 132
MwoI GCNNNNNNNGC 1 cut(s) 110
NlaIV GGNNCC 1 cut(s) 166
NspV TTCGAA 1 cut(s) 52
PkrI GCNGC 2 cut(s) 112, 122
Psp6I CCWGG 1 cut(s) 130
PspGI CCWGG 1 cut(s) 130
PspN4I GGNNCC 1 cut(s) 166
PspOMI GGGCCC 1 cut(s) 164
PspPI GGNCC 2 cut(s) 164, 165
RseI CAYNNNNRTG 1 cut(s) 194
SatI GCNGC 2 cut(s) 111, 121
Sau96I GGNCC 2 cut(s) 164, 165
ScrFI CCNGG 1 cut(s) 132
SduI GDGCHC 2 cut(s) 69, 168
SetI ASST 3 cut(s) 88, 115, 204
SfuI TTCGAA 1 cut(s) 52
SmiMI CAYNNNNRTG 1 cut(s) 194
Sse9I AATT 2 cut(s) 7, 54
SspMI CTAG 1 cut(s) 174
StyD4I CCNGG 1 cut(s) 130
TaqI TCGA 1 cut(s) 52
TasI AATT 2 cut(s) 7, 54
TscAI CASTG 1 cut(s) 27
TseI GCWGC 2 cut(s) 110, 120
TspRI CASTG 1 cut(s) 27
VneI GTGCAC 1 cut(s) 65
XspI CTAG 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.