Rw5G011180

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000812
Physical Location & Seq
Forward (+)
12612804 .. 12614309
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G011180.1

Sequence Viewer

Length: 648 bp
ATGGCCTCTAAGTTTCTAATTTTGGCATTCCTTGCCATAACTTCTTCCCTTGCTTTTGCTGACCCAAGTTCCCTTCAGGATTTCTGTGTGGCTGATCTGAAAAGCTCAGTACCAGTTAATGGCCTTGTCTGCAAGGACCCCAAGCTTATAGAAGCCAATGACTTCTTCTTCACTGGACTTCACCTAGCAGGCAACACATCAAACCCTGCTGGTTCACACTGTTTGCACACCAACTGGTTTTGGAGCCAAACAGGACTTAATACTCTTGGTATCTCCCTTGTTCGTATCGACTATGCACCATGGGGCATCAATGCTCCCCACACTCATCCTAGAGCCACTGAAGTCCTAACAGTCCTCGAAGGGACCCTCCAAGTGGGTTTTGTCACTTCCAACCCCGAAAACAGACTTATCACAAAGGTGCTTCAGAAAGGTGATGTGTTTGTTTTCCCAGTAGGACTTGTGCATTTCCAGCACAACGCTAGAAAGGTTAATGCAGTGGCCATTGTCGTTCTCAGCAGCCAAAATCCAGGTGTTATTAGCATCGCCAATTCAGTATTTGGATCTAAGCCTGCTATCTCTGCTGATGTTCTTGCAAAGGCTTTCCAAGTGGATAAGGACACAATCTACAATCTTCAGTCAAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

215

Amino Acids

23.18

Weight (kDa)

7.79

Isoelectric Point (pI)

24.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 63 - 207 1.3e-45 Cupin
Cupin_2 PF07883 96 - 170 6.4e-08 Cupin domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 119
AclWI GGATC 1 cut(s) 568
AcoI YGGCCR 1 cut(s) 498
AcuI CTGAAG 4 cut(s) 59, 360, 407, 617
AfaI GTAC 1 cut(s) 111
AfiI CCNNNNNNNGG 2 cut(s) 119, 373
AjnI CCWGG 1 cut(s) 526
AjuI GAANNNNNNNTTGG 2 cut(s) 149, 181
AleI CACNNNNGTG 1 cut(s) 416
AluBI AGCT 2 cut(s) 105, 145
AluI AGCT 2 cut(s) 105, 145
AlwI GGATC 1 cut(s) 568
AoxI GGCC 3 cut(s) 3, 121, 498
ApeKI GCWGC 1 cut(s) 516
AspS9I GGNCC 2 cut(s) 136, 363
AsuHPI GGTGA 2 cut(s) 173, 443
AvaII GGWCC 2 cut(s) 136, 363
BalI TGGCCA 1 cut(s) 500
BbvI GCAGC 1 cut(s) 528
BciT130I CCWGG 1 cut(s) 528
BfaI CTAG 4 cut(s) 185, 330, 480, 646
BisI GCNGC 1 cut(s) 517
BlsI GCNGC 1 cut(s) 518
Bme1390I CCNGG 1 cut(s) 528
Bme18I GGWCC 2 cut(s) 136, 363
BmgT120I GGNCC 2 cut(s) 136, 363
BmiI GGNNCC 4 cut(s) 138, 245, 364, 365
BmrFI CCNGG 1 cut(s) 528
BmrI ACTGGG 1 cut(s) 443
BmsI GCATC 2 cut(s) 315, 549
BmuI ACTGGG 1 cut(s) 443
BsaJI CCNNGG 1 cut(s) 299
Bsc4I CCNNNNNNNGG 2 cut(s) 119, 373
Bse1I ACTGG 4 cut(s) 113, 178, 239, 449
BseBI CCWGG 1 cut(s) 528
BseDI CCNNGG 1 cut(s) 299
BseGI GGATG 1 cut(s) 325
BseLI CCNNNNNNNGG 2 cut(s) 119, 373
BseMII CTCAG 2 cut(s) 120, 526
BseNI ACTGG 4 cut(s) 113, 178, 239, 449
BseXI GCAGC 1 cut(s) 528
BshFI GGCC 3 cut(s) 5, 123, 500
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 2 cut(s) 119, 373
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 3 cut(s) 5, 123, 500
Bsp143I GATC 2 cut(s) 94, 560
Bsp19I CCATGG 1 cut(s) 299
BspANI GGCC 3 cut(s) 5, 123, 500
BspCNI CTCAG 2 cut(s) 119, 525
BspLI GGNNCC 4 cut(s) 138, 245, 364, 365
BspPI GGATC 1 cut(s) 568
BsrI ACTGG 4 cut(s) 113, 178, 239, 449
BssECI CCNNGG 1 cut(s) 299
BssMI GATC 2 cut(s) 94, 560
BssT1I CCWWGG 1 cut(s) 299
Bst2UI CCWGG 1 cut(s) 528
Bst4CI ACNGT 2 cut(s) 221, 352
BstAPI GCANNNNNTGC 1 cut(s) 32
BstC8I GCNNGC 2 cut(s) 190, 570
BstDEI CTNAG 4 cut(s) 9, 106, 512, 564
BstDSI CCRYGG 1 cut(s) 299
BstF5I GGATG 1 cut(s) 325
BstKTI GATC 2 cut(s) 97, 563
BstMBI GATC 2 cut(s) 94, 560
BstMWI GCNNNNNNNGC 4 cut(s) 32, 129, 469, 578
BstNI CCWGG 1 cut(s) 528
BstSCI CCNGG 1 cut(s) 526
BstV1I GCAGC 1 cut(s) 528
BstX2I RGATCY 1 cut(s) 560
BstYI RGATCY 1 cut(s) 560
BsuRI GGCC 3 cut(s) 5, 123, 500
BtgI CCRYGG 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 526
BtsCI GGATG 1 cut(s) 325
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 4 cut(s) 171, 217, 336, 501
Cac8I GCNNGC 2 cut(s) 190, 570
Cfr13I GGNCC 2 cut(s) 136, 363
Csp6I GTAC 1 cut(s) 110
CviAII CATG 1 cut(s) 300
CviQI GTAC 1 cut(s) 110
DdeI CTNAG 4 cut(s) 9, 106, 512, 564
DpnI GATC 2 cut(s) 96, 562
DpnII GATC 2 cut(s) 94, 560
EaeI YGGCCR 1 cut(s) 498
Eco130I CCWWGG 1 cut(s) 299
Eco47I GGWCC 2 cut(s) 136, 363
Eco57I CTGAAG 4 cut(s) 59, 360, 407, 617
EcoO109I RGGNCCY 2 cut(s) 136, 363
EcoRII CCWGG 1 cut(s) 526
EcoT14I CCWWGG 1 cut(s) 299
ErhI CCWWGG 1 cut(s) 299
FaeI CATG 1 cut(s) 303
FaiI YATR 4 cut(s) 38, 149, 294, 301
FaqI GGGAC 1 cut(s) 376
FatI CATG 1 cut(s) 299
Fnu4HI GCNGC 1 cut(s) 517
FokI GGATG 1 cut(s) 312
Fsp4HI GCNGC 1 cut(s) 517
FspBI CTAG 4 cut(s) 185, 330, 480, 646
GluI GCNGC 1 cut(s) 517
HaeIII GGCC 3 cut(s) 5, 123, 500
Hin1II CATG 1 cut(s) 303
HindIII AAGCTT 1 cut(s) 143
HphI GGTGA 2 cut(s) 173, 443
Hpy166II GTNNAC 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 99, 426
Hpy188III TCNNGA 1 cut(s) 77
Hpy8I GTNNAC 1 cut(s) 215
HpyAV CCTTC 2 cut(s) 83, 353
HpyCH4III ACNGT 2 cut(s) 221, 352
HpyCH4V TGCA 6 cut(s) 132, 226, 296, 463, 494, 593
HpyF10VI GCNNNNNNNGC 4 cut(s) 32, 129, 469, 578
HpyF3I CTNAG 4 cut(s) 9, 106, 512, 564
Hsp92II CATG 1 cut(s) 303
KflI GGGWCCC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 94, 560
LmnI GCTCC 2 cut(s) 243, 319
Lsp1109I GCAGC 1 cut(s) 528
LweI GCATC 2 cut(s) 315, 549
MaeI CTAG 4 cut(s) 185, 330, 480, 646
MaeIII GTNAC 1 cut(s) 382
MalI GATC 2 cut(s) 96, 562
MboI GATC 2 cut(s) 94, 560
MboII GAAGA 4 cut(s) 36, 157, 160, 623
MflI RGATCY 1 cut(s) 560
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 2 cut(s) 18, 547
MluNI TGGCCA 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 414
MnlI CCTC 3 cut(s) 16, 365, 377
Mox20I TGGCCA 1 cut(s) 500
MscI TGGCCA 1 cut(s) 500
MseI TTAA 3 cut(s) 117, 258, 489
MslI CAYNNNNRTG 1 cut(s) 416
Msp20I TGGCCA 1 cut(s) 500
MspR9I CCNGG 1 cut(s) 528
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 528
MwoI GCNNNNNNNGC 4 cut(s) 32, 129, 469, 578
NcoI CCATGG 1 cut(s) 299
NdeII GATC 2 cut(s) 94, 560
NlaIII CATG 1 cut(s) 303
NlaIV GGNNCC 4 cut(s) 138, 245, 364, 365
NmuCI GTSAC 1 cut(s) 382
OliI CACNNNNGTG 1 cut(s) 416
PctI GAATGC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 119
PkrI GCNGC 1 cut(s) 518
PpuMI RGGWCCY 2 cut(s) 136, 363
Psp5II RGGWCCY 2 cut(s) 136, 363
Psp6I CCWGG 1 cut(s) 526
PspGI CCWGG 1 cut(s) 526
PspN4I GGNNCC 4 cut(s) 138, 245, 364, 365
PspPI GGNCC 2 cut(s) 136, 363
PspPPI RGGWCCY 2 cut(s) 136, 363
PsuI RGATCY 1 cut(s) 560
RsaI GTAC 1 cut(s) 111
RsaNI GTAC 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 416
SaqAI TTAA 3 cut(s) 117, 258, 489
SatI GCNGC 1 cut(s) 517
Sau3AI GATC 2 cut(s) 94, 560
Sau96I GGNCC 2 cut(s) 136, 363
ScrFI CCNGG 1 cut(s) 528
SetI ASST 7 cut(s) 107, 147, 186, 420, 433, 489, 532
SfaNI GCATC 2 cut(s) 315, 549
SinI GGWCC 2 cut(s) 136, 363
SmiMI CAYNNNNRTG 1 cut(s) 416
Sse9I AATT 2 cut(s) 18, 547
SspMI CTAG 4 cut(s) 185, 330, 480, 646
StyD4I CCNGG 1 cut(s) 526
StyI CCWWGG 1 cut(s) 299
TaaI ACNGT 2 cut(s) 221, 352
TaqI TCGA 2 cut(s) 288, 357
TasI AATT 2 cut(s) 18, 547
Tru1I TTAA 3 cut(s) 117, 258, 489
Tru9I TTAA 3 cut(s) 117, 258, 489
TscAI CASTG 4 cut(s) 178, 224, 343, 501
TseFI GTSAC 1 cut(s) 382
TseI GCWGC 1 cut(s) 516
Tsp45I GTSAC 1 cut(s) 382
TspRI CASTG 4 cut(s) 178, 224, 343, 501
Van91I CCANNNNNTGG 1 cut(s) 119
VpaK11BI GGWCC 2 cut(s) 136, 363
XspI CTAG 4 cut(s) 185, 330, 480, 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.