Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005223.1

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Reverse (-)

3976 .. 5472

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005223.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

atggcctctaagtttctaattttggcattccttgccataacttcttcccttgcttttgctgacccaagttcccttcaggatttctgtgtggctgatctgaaaagctcagtaccagttaatggccttgtctgcaaggaccccaagcttatagaagccaatgacttcttcttcactggacttcacctagcaggcaacacatcaaaccctgctggttcacgtgtgacccctgcgaacgtggcccaaattccaggacttgtttgggcccaaaaaagaagtcaggtcaagggactaccccgacgactgcaccccgcggtgctggcacgcctgcgcaatcacacactcaaaagagacggtttgcacaccaactggttttggagccaaacaggacttaatactcttggtatctcccttgttcgtatcgactatgcaccatggggcatcaatgctccccacactcatcctagagccactgaagtcctaacagtcctcgaagggaccctccaagtgggttttgtcacttccaaccccgaaaacagacttatcacaaaggtgcttcagaaaggtgatgtgtttgttttcccagtaggacttgtgcatttccagcacaacgctggaaaggttaatgcagtggccattgccgttctcagcagccaaaatccaggtgttattagcatcgccaattcagtatttggatctaagcctgctatctctgctgatgttcttgcaaaggctttccaagtggataaggacacaatctacaatcttcagtcaaagttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

259

Amino Acids

27.97

Weight (kDa)

9.8

Isoelectric Point (pI)

29.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	329
AccB7I	CCANNNNNTGG	1 cut(s)	119
AccII	CGCG	1 cut(s)	311
AciI	CCGC	2 cut(s)	309, 311
AclWI	GGATC	1 cut(s)	700
AcoI	YGGCCR	1 cut(s)	630
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	4 cut(s)	59, 492, 539, 749
AcvI	CACGTG	1 cut(s)	218
AfaI	GTAC	1 cut(s)	111
AfiI	CCNNNNNNNGG	2 cut(s)	119, 505
AflIII	ACRYGT	1 cut(s)	217
AjnI	CCWGG	2 cut(s)	247, 658
AjuI	GAANNNNNNNTTGG	2 cut(s)	149, 181
AleI	CACNNNNGTG	1 cut(s)	548
AluBI	AGCT	2 cut(s)	105, 145
AluI	AGCT	2 cut(s)	105, 145
Alw26I	GTCTC	1 cut(s)	342
AlwI	GGATC	1 cut(s)	700
AoxI	GGCC	5 cut(s)	3, 121, 237, 261, 630
ApaI	GGGCCC	1 cut(s)	265
ApeKI	GCWGC	1 cut(s)	648
ApoI	RAATTY	1 cut(s)	243
ArsI	GACNNNNNNTTYG	2 cut(s)	259, 291
AspLEI	GCGC	1 cut(s)	330
AspS9I	GGNCC	5 cut(s)	136, 238, 261, 262, 495
AsuHPI	GGTGA	2 cut(s)	173, 575
AvaII	GGWCC	2 cut(s)	136, 495
BaeGI	GKGCMC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	632
BanII	GRGCYC	1 cut(s)	265
BbrPI	CACGTG	1 cut(s)	218
BbvI	GCAGC	1 cut(s)	660
BceAI	ACGGC	1 cut(s)	623
BciT130I	CCWGG	2 cut(s)	249, 660
BcoDI	GTCTC	1 cut(s)	342
BfaI	CTAG	3 cut(s)	185, 462, 778
BisI	GCNGC	1 cut(s)	649
BlsI	GCNGC	1 cut(s)	650
Bme1390I	CCNGG	2 cut(s)	249, 660
Bme18I	GGWCC	2 cut(s)	136, 495
BmgT120I	GGNCC	5 cut(s)	136, 238, 261, 262, 495
BmiI	GGNNCC	5 cut(s)	138, 263, 377, 496, 497
BmrFI	CCNGG	2 cut(s)	249, 660
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	2 cut(s)	447, 681
BmuI	ACTGGG	1 cut(s)	575
BsaAI	YACGTR	1 cut(s)	218
BsaJI	CCNNGG	2 cut(s)	309, 431
Bsc4I	CCNNNNNNNGG	2 cut(s)	119, 505
Bse1I	ACTGG	4 cut(s)	113, 178, 371, 581
Bse3DI	GCAATG	1 cut(s)	633
BseBI	CCWGG	2 cut(s)	249, 660
BseDI	CCNNGG	2 cut(s)	309, 431
BseGI	GGATG	1 cut(s)	457
BseLI	CCNNNNNNNGG	2 cut(s)	119, 505
BseMI	GCAATG	1 cut(s)	633
BseMII	CTCAG	2 cut(s)	120, 658
BseNI	ACTGG	4 cut(s)	113, 178, 371, 581
BseSI	GKGCMC	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	660
BsgI	GTGCAG	1 cut(s)	287
Bsh1236I	CGCG	1 cut(s)	311
BshFI	GGCC	5 cut(s)	5, 123, 239, 263, 632
BslFI	GGGAC	2 cut(s)	300, 508
BslI	CCNNNNNNNGG	2 cut(s)	119, 505
BsmAI	GTCTC	1 cut(s)	342
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	2 cut(s)	300, 508
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	5 cut(s)	5, 123, 239, 263, 632
Bsp120I	GGGCCC	1 cut(s)	261
Bsp1286I	GDGCHC	1 cut(s)	265
Bsp143I	GATC	2 cut(s)	94, 692
Bsp19I	CCATGG	1 cut(s)	431
BspACI	CCGC	2 cut(s)	309, 311
BspANI	GGCC	5 cut(s)	5, 123, 239, 263, 632
BspCNI	CTCAG	2 cut(s)	119, 657
BspFNI	CGCG	1 cut(s)	311
BspLI	GGNNCC	5 cut(s)	138, 263, 377, 496, 497
BspPI	GGATC	1 cut(s)	700
BsrDI	GCAATG	1 cut(s)	633
BsrI	ACTGG	4 cut(s)	113, 178, 371, 581
BssECI	CCNNGG	2 cut(s)	309, 431
BssMI	GATC	2 cut(s)	94, 692
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	249, 660
Bst4CI	ACNGT	2 cut(s)	353, 484
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	218
BstC8I	GCNNGC	5 cut(s)	190, 318, 322, 326, 702
BstDEI	CTNAG	4 cut(s)	9, 106, 644, 696
BstDSI	CCRYGG	2 cut(s)	309, 431
BstF5I	GGATG	1 cut(s)	457
BstFNI	CGCG	1 cut(s)	311
BstHHI	GCGC	1 cut(s)	330
BstKTI	GATC	2 cut(s)	97, 695
BstMAI	GTCTC	1 cut(s)	342
BstMBI	GATC	2 cut(s)	94, 692
BstMWI	GCNNNNNNNGC	6 cut(s)	32, 129, 236, 317, 601, 710
BstNI	CCWGG	2 cut(s)	249, 660
BstSCI	CCNGG	2 cut(s)	247, 658
BstSLI	GKGCMC	1 cut(s)	265
BstUI	CGCG	1 cut(s)	311
BstV1I	GCAGC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	692
BstYI	RGATCY	1 cut(s)	692
BsuRI	GGCC	5 cut(s)	5, 123, 239, 263, 632
BtgI	CCRYGG	2 cut(s)	309, 431
BtgZI	GCGATG	1 cut(s)	658
BtsCI	GGATG	1 cut(s)	457
BtsI	GCAGTG	1 cut(s)	633
BtsIMutI	CAGTG	3 cut(s)	171, 468, 633
Cac8I	GCNNGC	5 cut(s)	190, 318, 322, 326, 702
CfoI	GCGC	1 cut(s)	330
Cfr13I	GGNCC	5 cut(s)	136, 238, 261, 262, 495
Cfr42I	CCGCGG	1 cut(s)	312
Csp6I	GTAC	1 cut(s)	110
CviAII	CATG	1 cut(s)	432
CviQI	GTAC	1 cut(s)	110
DdeI	CTNAG	4 cut(s)	9, 106, 644, 696
DpnI	GATC	2 cut(s)	96, 694
DpnII	GATC	2 cut(s)	94, 692
EaeI	YGGCCR	1 cut(s)	630
Eco130I	CCWWGG	1 cut(s)	431
Eco24I	GRGCYC	1 cut(s)	265
Eco47I	GGWCC	2 cut(s)	136, 495
Eco57I	CTGAAG	4 cut(s)	59, 492, 539, 749
Eco72I	CACGTG	1 cut(s)	218
EcoO109I	RGGNCCY	2 cut(s)	136, 495
EcoRII	CCWGG	2 cut(s)	247, 658
EcoT14I	CCWWGG	1 cut(s)	431
EcoT38I	GRGCYC	1 cut(s)	265
ErhI	CCWWGG	1 cut(s)	431
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	1 cut(s)	435
FaiI	YATR	4 cut(s)	38, 149, 426, 433
FaqI	GGGAC	2 cut(s)	300, 508
FatI	CATG	1 cut(s)	431
FauI	CCCGC	1 cut(s)	316
Fnu4HI	GCNGC	1 cut(s)	649
FokI	GGATG	1 cut(s)	444
FriOI	GRGCYC	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	649
FspBI	CTAG	3 cut(s)	185, 462, 778
FspI	TGCGCA	1 cut(s)	329
GlaI	GCGC	1 cut(s)	329
GluI	GCNGC	1 cut(s)	649
HaeIII	GGCC	5 cut(s)	5, 123, 239, 263, 632
HhaI	GCGC	1 cut(s)	330
Hin1II	CATG	1 cut(s)	435
Hin6I	GCGC	1 cut(s)	328
HinP1I	GCGC	1 cut(s)	328
HindIII	AAGCTT	1 cut(s)	143
HphI	GGTGA	2 cut(s)	173, 575
Hpy166II	GTNNAC	1 cut(s)	215
Hpy188I	TCNGA	2 cut(s)	99, 558
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	215
Hpy99I	CGWCG	1 cut(s)	300
HpyAV	CCTTC	2 cut(s)	83, 485
HpyCH4III	ACNGT	2 cut(s)	353, 484
HpyCH4IV	ACGT	2 cut(s)	217, 234
HpyCH4V	TGCA	7 cut(s)	132, 304, 358, 428, 595, 626, 725
HpyF10VI	GCNNNNNNNGC	6 cut(s)	32, 129, 236, 317, 601, 710
HpyF3I	CTNAG	4 cut(s)	9, 106, 644, 696
HpySE526I	ACGT	2 cut(s)	217, 234
Hsp92II	CATG	1 cut(s)	435
HspAI	GCGC	1 cut(s)	328
KflI	GGGWCCC	1 cut(s)	495
KspI	CCGCGG	1 cut(s)	312
Kzo9I	GATC	2 cut(s)	94, 692
LmnI	GCTCC	2 cut(s)	375, 451
Lsp1109I	GCAGC	1 cut(s)	660
LweI	GCATC	2 cut(s)	447, 681
MaeI	CTAG	3 cut(s)	185, 462, 778
MaeII	ACGT	2 cut(s)	217, 234
MaeIII	GTNAC	2 cut(s)	220, 514
MalI	GATC	2 cut(s)	96, 694
MboI	GATC	2 cut(s)	94, 692
MboII	GAAGA	4 cut(s)	36, 157, 160, 755
MflI	RGATCY	1 cut(s)	692
MhlI	GDGCHC	1 cut(s)	265
MlsI	TGGCCA	1 cut(s)	632
MluCI	AATT	3 cut(s)	18, 243, 679
MluNI	TGGCCA	1 cut(s)	632
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	3 cut(s)	16, 497, 509
Mox20I	TGGCCA	1 cut(s)	632
MscI	TGGCCA	1 cut(s)	632
MseI	TTAA	3 cut(s)	117, 390, 621
MslI	CAYNNNNRTG	1 cut(s)	548
Msp20I	TGGCCA	1 cut(s)	632
MspA1I	CMGCKG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	249, 660
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	249, 660
MvnI	CGCG	1 cut(s)	311
MwoI	GCNNNNNNNGC	6 cut(s)	32, 129, 236, 317, 601, 710
NcoI	CCATGG	1 cut(s)	431
NdeII	GATC	2 cut(s)	94, 692
NlaIII	CATG	1 cut(s)	435
NlaIV	GGNNCC	5 cut(s)	138, 263, 377, 496, 497
NmuCI	GTSAC	2 cut(s)	220, 514
NsbI	TGCGCA	1 cut(s)	329
OliI	CACNNNNGTG	1 cut(s)	548
PctI	GAATGC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	119
PfoI	TCCNGGA	1 cut(s)	247
PkrI	GCNGC	1 cut(s)	650
PmaCI	CACGTG	1 cut(s)	218
PmlI	CACGTG	1 cut(s)	218
Ppu21I	YACGTR	1 cut(s)	218
PpuMI	RGGWCCY	2 cut(s)	136, 495
Psp5II	RGGWCCY	2 cut(s)	136, 495
Psp6I	CCWGG	2 cut(s)	247, 658
PspCI	CACGTG	1 cut(s)	218
PspGI	CCWGG	2 cut(s)	247, 658
PspN4I	GGNNCC	5 cut(s)	138, 263, 377, 496, 497
PspOMI	GGGCCC	1 cut(s)	261
PspPI	GGNCC	5 cut(s)	136, 238, 261, 262, 495
PspPPI	RGGWCCY	2 cut(s)	136, 495
PsuI	RGATCY	1 cut(s)	692
RsaI	GTAC	1 cut(s)	111
RsaNI	GTAC	1 cut(s)	110
RseI	CAYNNNNRTG	1 cut(s)	548
SacII	CCGCGG	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	117, 390, 621
SatI	GCNGC	1 cut(s)	649
Sau3AI	GATC	2 cut(s)	94, 692
Sau96I	GGNCC	5 cut(s)	136, 238, 261, 262, 495
ScrFI	CCNGG	2 cut(s)	249, 660
SduI	GDGCHC	1 cut(s)	265
SfaNI	GCATC	2 cut(s)	447, 681
Sfr303I	CCGCGG	1 cut(s)	312
SgrBI	CCGCGG	1 cut(s)	312
SinI	GGWCC	2 cut(s)	136, 495
SmiMI	CAYNNNNRTG	1 cut(s)	548
Sse9I	AATT	3 cut(s)	18, 243, 679
SsiI	CCGC	2 cut(s)	309, 311
SspMI	CTAG	3 cut(s)	185, 462, 778
StyD4I	CCNGG	2 cut(s)	247, 658
StyI	CCWWGG	1 cut(s)	431
TaaI	ACNGT	2 cut(s)	353, 484
TaiI	ACGT	2 cut(s)	220, 237
TaqI	TCGA	2 cut(s)	420, 489
TasI	AATT	3 cut(s)	18, 243, 679
Tru1I	TTAA	3 cut(s)	117, 390, 621
Tru9I	TTAA	3 cut(s)	117, 390, 621
TscAI	CASTG	3 cut(s)	178, 475, 633
TseFI	GTSAC	2 cut(s)	220, 514
TseI	GCWGC	1 cut(s)	648
Tsp45I	GTSAC	2 cut(s)	220, 514
TspRI	CASTG	3 cut(s)	178, 475, 633
Van91I	CCANNNNNTGG	1 cut(s)	119
VpaK11BI	GGWCC	2 cut(s)	136, 495
XapI	RAATTY	1 cut(s)	243
XcmI	CCANNNNNNNNNTGG	2 cut(s)	255, 608
XspI	CTAG	3 cut(s)	185, 462, 778

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.