Rh5CG140200

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000812
Physical Location & Seq
Reverse (-)
12208162 .. 12214425
6264 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG140200.1

Sequence Viewer

Length: 261 bp
ATGAGAGTACTTCAGAAGGGTGATGTGTTTGTGTTCCCAGTAGGACTAGCACATTTCCAGCACAATGTTGGGTATGGTAACGCAGTCGCGATTGCAGCACTCAGCAGCCAAACTCCTGGTGTAATTAGCATTGCGAATGCTGCTTTTGGATCGAAGCCTGACATTTCTGCTGATGTTCTTGGAAAGGCATTCCAAGTGGATACAAACACAGTCTACAACTTTCGGTCAAAGTTTTGGACTCCAATGCAGAACCAGCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

86

Amino Acids

9.27

Weight (kDa)

9.3

Isoelectric Point (pI)

3.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 3 - 71 2.5e-19 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AccII CGCG 1 cut(s) 89
AclWI GGATC 1 cut(s) 157
AfaI GTAC 1 cut(s) 9
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AlwI GGATC 1 cut(s) 157
ApeKI GCWGC 3 cut(s) 95, 105, 140
AsuHPI GGTGA 1 cut(s) 32
BbvI GCAGC 3 cut(s) 107, 117, 127
BciT130I CCWGG 1 cut(s) 117
BciVI GTATCC 1 cut(s) 193
BfaI CTAG 1 cut(s) 47
BfuI GTATCC 1 cut(s) 193
BisI GCNGC 3 cut(s) 96, 106, 141
BlsI GCNGC 3 cut(s) 97, 107, 142
BmcAI AGTACT 1 cut(s) 9
Bme1390I CCNGG 1 cut(s) 117
BmrFI CCNGG 1 cut(s) 117
BmrI ACTGGG 1 cut(s) 32
BmuI ACTGGG 1 cut(s) 32
Bse1I ACTGG 1 cut(s) 38
Bse3DI GCAATG 1 cut(s) 129
BseBI CCWGG 1 cut(s) 117
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 115
BseNI ACTGG 1 cut(s) 38
BseXI GCAGC 3 cut(s) 107, 117, 127
Bsh1236I CGCG 1 cut(s) 89
BsmI GAATGC 2 cut(s) 142, 188
Bsp143I GATC 1 cut(s) 149
Bsp68I TCGCGA 1 cut(s) 89
BspCNI CTCAG 1 cut(s) 114
BspFNI CGCG 1 cut(s) 89
BspPI GGATC 1 cut(s) 157
BsrDI GCAATG 1 cut(s) 129
BsrI ACTGG 1 cut(s) 38
BssMI GATC 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 1 cut(s) 211
BstDEI CTNAG 1 cut(s) 101
BstFNI CGCG 1 cut(s) 89
BstKTI GATC 1 cut(s) 152
BstMBI GATC 1 cut(s) 149
BstMWI GCNNNNNNNGC 3 cut(s) 95, 140, 253
BstNI CCWGG 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 115
BstUI CGCG 1 cut(s) 89
BstV1I GCAGC 3 cut(s) 107, 117, 127
BstXI CCANNNNNNTGG 1 cut(s) 116
BsuI GTATCC 1 cut(s) 193
BtuMI TCGCGA 1 cut(s) 89
Csp6I GTAC 1 cut(s) 8
CviJI RGCY 3 cut(s) 108, 157, 256
CviKI_1 RGCY 3 cut(s) 108, 157, 256
CviQI GTAC 1 cut(s) 8
DdeI CTNAG 1 cut(s) 101
DpnI GATC 1 cut(s) 151
DpnII GATC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 115
FaiI YATR 1 cut(s) 75
FblI GTMKAC 1 cut(s) 213
Fnu4HI GCNGC 3 cut(s) 96, 106, 141
Fsp4HI GCNGC 3 cut(s) 96, 106, 141
FspBI CTAG 1 cut(s) 47
GluI GCNGC 3 cut(s) 96, 106, 141
HinfI GANTC 1 cut(s) 238
HphI GGTGA 1 cut(s) 32
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 1 cut(s) 88
Hpy8I GTNNAC 1 cut(s) 214
HpyAV CCTTC 1 cut(s) 10
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 95, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 140, 253
HpyF3I CTNAG 1 cut(s) 101
Kzo9I GATC 1 cut(s) 149
LpnPI CCDG 5 cut(s) 51, 71, 102, 129, 171
Lsp1109I GCAGC 3 cut(s) 107, 117, 127
MaeI CTAG 1 cut(s) 47
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 151
MboI GATC 1 cut(s) 149
MluCI AATT 1 cut(s) 123
MlyI GAGTC 1 cut(s) 232
MspR9I CCNGG 1 cut(s) 117
Mva1269I GAATGC 2 cut(s) 142, 188
MvaI CCWGG 1 cut(s) 117
MvnI CGCG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 95, 140, 253
NdeII GATC 1 cut(s) 149
NruI TCGCGA 1 cut(s) 89
PctI GAATGC 2 cut(s) 142, 188
PkrI GCNGC 3 cut(s) 97, 107, 142
PleI GAGTC 1 cut(s) 232
PpsI GAGTC 1 cut(s) 232
Psp6I CCWGG 1 cut(s) 115
PspGI CCWGG 1 cut(s) 115
RruI TCGCGA 1 cut(s) 89
RsaI GTAC 1 cut(s) 9
RsaNI GTAC 1 cut(s) 8
SatI GCNGC 3 cut(s) 96, 106, 141
Sau3AI GATC 1 cut(s) 149
ScaI AGTACT 1 cut(s) 9
SchI GAGTC 1 cut(s) 232
ScrFI CCNGG 1 cut(s) 117
SetI ASST 1 cut(s) 258
SgeI CNNG 9 cut(s) 50, 59, 70, 100, 128, 129, 170, 191, 206
Sse9I AATT 1 cut(s) 123
SspMI CTAG 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 115
TaaI ACNGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 152
TaqII GACCGA 1 cut(s) 213
TasI AATT 1 cut(s) 123
TatI WGTACW 1 cut(s) 7
TseI GCWGC 3 cut(s) 95, 105, 140
XcmI CCANNNNNNNNNTGG 1 cut(s) 65
XmiI GTMKAC 1 cut(s) 213
XspI CTAG 1 cut(s) 47
ZrmI AGTACT 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.