Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Reverse (-)

4777260 .. 4778209

Gene Structure 950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G094800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCTCCCAGTTTCTATTTTGGGCATTCATTGCCATAACTTGTTCCATTGCTTTGGCAACTGATCCAAGTTCTCTTCAGGATTTCTGCGTGGCTGACCCAGTAAGATCAGTACCAGTGAATGGCCTCGTTTGCAAGGACCCCAAGTTTGTTGAAGCCAATGACTTCTCCTTCAGTGGCCTTCACCTAGCAGGCAACACATCAAACACAGTCGGTTCACATGTGACCCCAGTCAATGTAGCCCAAATTGCAGGACTTAACACTCTTGGCATCTCCATTGCTCGTATTGATTATGCACCGTGGGGTGTTAATTCTCCACACACACATCCTAGAGCCAGTGAAGTCTTGACAGTTCTTGAAGGGAGCCTCCAAGTAGGCTTTATCACCTCCCACCCCGAAAACCGTCTCATCACCAAGATACTTCATGTGGGTGATGTGTTTGTGTTCCCAGTAGGCCTTTTGCATTTCCAGCGCAATATTGGATATGGTAATGCAGTTGCCATTGCAGCTCTCAGCAGCCAAAATCCTGGTGTTATTACCATTGCAAATGCAGTGTTCGGATCGAATCCTGACATCTCTAGTGATGTTCTTACAAGGGCTTTCCAAGTGGACAAGGACACAATTTACAATTTCCAGTCAAGGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

216

Amino Acids

23.01

Weight (kDa)

5.91

Isoelectric Point (pI)

24.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	122
AclWI	GGATC	2 cut(s)	59, 568
AcuI	CTGAAG	2 cut(s)	62, 157
AfaI	GTAC	1 cut(s)	114
AfiI	CCNNNNNNNGG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	2 cut(s)	155, 359
AjnI	CCWGG	1 cut(s)	526
AluBI	AGCT	1 cut(s)	509
AluI	AGCT	1 cut(s)	509
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	2 cut(s)	59, 568
AoxI	GGCC	4 cut(s)	3, 124, 178, 454
ApeKI	GCWGC	2 cut(s)	506, 516
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
AspLEI	GCGC	1 cut(s)	474
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	176, 376, 403, 443
AvaII	GGWCC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	518, 528
BciT130I	CCWGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	410
BfaI	CTAG	3 cut(s)	188, 330, 579
BisI	GCNGC	2 cut(s)	507, 517
BlsI	GCNGC	2 cut(s)	508, 518
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	2 cut(s)	141, 365
BmrFI	CCNGG	1 cut(s)	528
BmrI	ACTGGG	4 cut(s)	4, 95, 224, 443
BmsI	GCATC	1 cut(s)	279
BmuI	ACTGGG	4 cut(s)	4, 95, 224, 443
BoxI	GACNNNNGTC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	299
Bsc4I	CCNNNNNNNGG	1 cut(s)	122
Bse1I	ACTGG	7 cut(s)	10, 101, 116, 230, 336, 449, 634
Bse3DI	GCAATG	5 cut(s)	30, 48, 276, 501, 540
BseBI	CCWGG	1 cut(s)	528
BseDI	CCNNGG	1 cut(s)	299
BseGI	GGATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	122
BseMI	GCAATG	5 cut(s)	30, 48, 276, 501, 540
BseMII	CTCAG	1 cut(s)	526
BseNI	ACTGG	7 cut(s)	10, 101, 116, 230, 336, 449, 634
BseXI	GCAGC	2 cut(s)	518, 528
BshFI	GGCC	4 cut(s)	5, 126, 180, 456
BslI	CCNNNNNNNGG	1 cut(s)	122
BsmAI	GTCTC	1 cut(s)	410
BsmBI	CGTCTC	1 cut(s)	410
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	4 cut(s)	5, 126, 180, 456
Bsp143I	GATC	3 cut(s)	64, 107, 560
BspANI	GGCC	4 cut(s)	5, 126, 180, 456
BspCNI	CTCAG	1 cut(s)	525
BspLI	GGNNCC	2 cut(s)	141, 365
BspPI	GGATC	2 cut(s)	59, 568
BsrDI	GCAATG	5 cut(s)	30, 48, 276, 501, 540
BsrI	ACTGG	7 cut(s)	10, 101, 116, 230, 336, 449, 634
BssECI	CCNNGG	1 cut(s)	299
BssMI	GATC	3 cut(s)	64, 107, 560
Bst2UI	CCWGG	1 cut(s)	528
Bst4CI	ACNGT	4 cut(s)	211, 300, 352, 404
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	1 cut(s)	512
BstDSI	CCRYGG	1 cut(s)	299
BstF5I	GGATG	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	474
BstKTI	GATC	3 cut(s)	67, 110, 563
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	3 cut(s)	64, 107, 560
BstMWI	GCNNNNNNNGC	5 cut(s)	32, 132, 248, 469, 506
BstNI	CCWGG	1 cut(s)	528
BstNSI	RCATGY	1 cut(s)	224
BstPAI	GACNNNNGTC	1 cut(s)	230
BstSCI	CCNGG	1 cut(s)	526
BstV1I	GCAGC	2 cut(s)	518, 528
BstXI	CCANNNNNNTGG	2 cut(s)	55, 527
BsuRI	GGCC	4 cut(s)	5, 126, 180, 456
BtgI	CCRYGG	1 cut(s)	299
BtsCI	GGATG	1 cut(s)	325
BtsI	GCAGTG	1 cut(s)	558
BtsIMutI	CAGTG	4 cut(s)	123, 181, 343, 558
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	1 cut(s)	474
Cfr13I	GGNCC	1 cut(s)	139
Csp6I	GTAC	1 cut(s)	113
CviAII	CATG	2 cut(s)	221, 425
CviQI	GTAC	1 cut(s)	113
DdeI	CTNAG	1 cut(s)	512
DpnI	GATC	3 cut(s)	66, 109, 562
DpnII	GATC	3 cut(s)	64, 107, 560
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	2 cut(s)	62, 157
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	1 cut(s)	526
Esp3I	CGTCTC	1 cut(s)	410
FaeI	CATG	2 cut(s)	224, 428
FaiI	YATR	5 cut(s)	38, 222, 294, 426, 486
FatI	CATG	2 cut(s)	220, 424
Fnu4HI	GCNGC	2 cut(s)	507, 517
FokI	GGATG	1 cut(s)	312
Fsp4HI	GCNGC	2 cut(s)	507, 517
FspBI	CTAG	3 cut(s)	188, 330, 579
GlaI	GCGC	1 cut(s)	473
GluI	GCNGC	2 cut(s)	507, 517
HaeIII	GGCC	4 cut(s)	5, 126, 180, 456
HhaI	GCGC	1 cut(s)	474
Hin1II	CATG	2 cut(s)	224, 428
Hin6I	GCGC	1 cut(s)	472
HinP1I	GCGC	1 cut(s)	472
HinfI	GANTC	1 cut(s)	565
HphI	GGTGA	4 cut(s)	176, 376, 403, 443
Hpy166II	GTNNAC	2 cut(s)	218, 610
Hpy188I	TCNGA	1 cut(s)	560
Hpy188III	TCNNGA	4 cut(s)	80, 346, 356, 569
Hpy8I	GTNNAC	2 cut(s)	218, 610
HpyAV	CCTTC	3 cut(s)	181, 191, 353
HpyCH4III	ACNGT	4 cut(s)	211, 300, 352, 404
HpyCH4V	TGCA	8 cut(s)	135, 251, 296, 463, 494, 506, 545, 551
HpyF10VI	GCNNNNNNNGC	5 cut(s)	32, 132, 248, 469, 506
HpyF3I	CTNAG	1 cut(s)	512
Hsp92II	CATG	2 cut(s)	224, 428
HspAI	GCGC	1 cut(s)	472
Kzo9I	GATC	3 cut(s)	64, 107, 560
LmnI	GCTCC	1 cut(s)	363
Lsp1109I	GCAGC	2 cut(s)	518, 528
LweI	GCATC	1 cut(s)	279
MaeI	CTAG	3 cut(s)	188, 330, 579
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	66, 109, 562
MboI	GATC	3 cut(s)	64, 107, 560
MboII	GAAGA	1 cut(s)	68
MluCI	AATT	4 cut(s)	246, 310, 621, 628
MnlI	CCTC	4 cut(s)	16, 137, 377, 397
MseI	TTAA	2 cut(s)	258, 309
MslI	CAYNNNNRTG	1 cut(s)	429
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	528
MwoI	GCNNNNNNNGC	5 cut(s)	32, 132, 248, 469, 506
NdeII	GATC	3 cut(s)	64, 107, 560
NlaIII	CATG	2 cut(s)	224, 428
NlaIV	GGNNCC	2 cut(s)	141, 365
NmuCI	GTSAC	1 cut(s)	223
NspI	RCATGY	1 cut(s)	224
PceI	AGGCCT	1 cut(s)	456
PciI	ACATGT	1 cut(s)	220
PctI	GAATGC	1 cut(s)	26
PfeI	GAWTC	1 cut(s)	565
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	508, 518
PpuMI	RGGWCCY	1 cut(s)	139
PscI	ACATGT	1 cut(s)	220
PshAI	GACNNNNGTC	1 cut(s)	230
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	1 cut(s)	526
PspGI	CCWGG	1 cut(s)	526
PspN4I	GGNNCC	2 cut(s)	141, 365
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
RseI	CAYNNNNRTG	1 cut(s)	429
SaqAI	TTAA	2 cut(s)	258, 309
SatI	GCNGC	2 cut(s)	507, 517
Sau3AI	GATC	3 cut(s)	64, 107, 560
Sau96I	GGNCC	1 cut(s)	139
ScrFI	CCNGG	1 cut(s)	528
SetI	ASST	4 cut(s)	189, 389, 511, 644
SfaNI	GCATC	1 cut(s)	279
SinI	GGWCC	1 cut(s)	139
SmiMI	CAYNNNNRTG	1 cut(s)	429
Sse9I	AATT	4 cut(s)	246, 310, 621, 628
SseBI	AGGCCT	1 cut(s)	456
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	3 cut(s)	188, 330, 579
StuI	AGGCCT	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	526
TaaI	ACNGT	4 cut(s)	211, 300, 352, 404
TaqI	TCGA	1 cut(s)	563
TasI	AATT	4 cut(s)	246, 310, 621, 628
TfiI	GAWTC	1 cut(s)	565
Tru1I	TTAA	2 cut(s)	258, 309
Tru9I	TTAA	2 cut(s)	258, 309
TscAI	CASTG	4 cut(s)	123, 181, 343, 558
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	2 cut(s)	506, 516
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	2 cut(s)	19, 413
TspRI	CASTG	4 cut(s)	123, 181, 343, 558
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	139
XceI	RCATGY	1 cut(s)	224
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	3 cut(s)	188, 330, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.