Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Forward (+)

40477428 .. 40478209

Gene Structure 782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1269700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGGCCTCACAGTTTCTATTTTTTGCATTCCTTGCCGTAACTTCTTCCATTGCTTTGGCATCGGATCCGAGTTCTCTTCAGGATTTCTGCGTTGCAGACGCAATGAGTTCAGTACTGGTTAATGGTCGTGTTTGCAAGGACCCTAAGCTTGTTGAAGCCAACGATTTCTTTTTCAGTGGGCTTCACCTAGCAGGCAACACATCAAACGCAGTTGGTTCACGTGTGACTCCTGTTGGTGTAGCACAAATTGGAGGACTTAATGCCCTTGGCATCTCTGCTGCGCGTATTGATTTTGCCCCATGGGGTCTTAACCCTCCACATACACACCCTAGAGCCAGTGAAATTTTGACAGTCCTGGAAGGGAGCCTCAGAGTTGGTTTTGTCACCTCCAACCCCGAAAACCGCCTCATCACCAAGGTACTTCAGAAGGGTGATGTTTTTGTGTTCCCAGTAGGTCTTGTGCATTTCCAGCAGAATATTGGAAATGTTAATGCAGTTGCCCTTGTAGCTCTCAGCAGCCAAAATCCAGGTGTCATTACCATTGCAAATGCAGTATTTGGATCAAATCCTGATATCCCTGCTGATATTCTTGCAAAGGCTTTCCAAGTGGATACAAACGCGATCTACAGTCTTCAGTCCAAGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

216

Amino Acids

22.6

Weight (kDa)

6.03

Isoelectric Point (pI)

27.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	61 - 206	6.4e-51	Cupin
Cupin_2	PF07883	97 - 169	9.2e-09	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	283, 620
AciI	CCGC	1 cut(s)	403
AclWI	GGATC	3 cut(s)	59, 72, 568
AcsI	RAATTY	1 cut(s)	342
AcuI	CTGAAG	3 cut(s)	62, 407, 617
AcvI	CACGTG	1 cut(s)	221
AfaI	GTAC	2 cut(s)	114, 420
AflIII	ACRYGT	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	155
AjnI	CCWGG	2 cut(s)	354, 526
AluBI	AGCT	2 cut(s)	148, 509
AluI	AGCT	2 cut(s)	148, 509
AlwI	GGATC	3 cut(s)	59, 72, 568
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	2 cut(s)	278, 516
ApoI	RAATTY	1 cut(s)	342
AspLEI	GCGC	1 cut(s)	283
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	4 cut(s)	176, 376, 403, 443
AvaII	GGWCC	1 cut(s)	139
BamHI	GGATCC	1 cut(s)	64
BbrPI	CACGTG	1 cut(s)	221
BbsI	GAAGAC	1 cut(s)	623
BbvI	GCAGC	2 cut(s)	265, 528
BceAI	ACGGC	1 cut(s)	20
BciT130I	CCWGG	2 cut(s)	356, 528
BciVI	GTATCC	1 cut(s)	604
BfaI	CTAG	2 cut(s)	188, 330
BfmI	CTRYAG	1 cut(s)	625
BfuI	GTATCC	1 cut(s)	604
BisI	GCNGC	2 cut(s)	279, 517
BlsI	GCNGC	2 cut(s)	280, 518
BmcAI	AGTACT	1 cut(s)	114
Bme1390I	CCNGG	2 cut(s)	356, 528
Bme18I	GGWCC	1 cut(s)	139
BmgT120I	GGNCC	1 cut(s)	139
BmiI	GGNNCC	3 cut(s)	66, 141, 365
BmrFI	CCNGG	2 cut(s)	356, 528
BmrI	ACTGGG	1 cut(s)	443
BmsI	GCATC	2 cut(s)	68, 279
BmuI	ACTGGG	1 cut(s)	443
BpiI	GAAGAC	1 cut(s)	623
Bpu10I	CCTNAGC	1 cut(s)	144
BsaAI	YACGTR	1 cut(s)	221
BsaJI	CCNNGG	3 cut(s)	265, 299, 414
Bse1I	ACTGG	3 cut(s)	120, 336, 449
Bse3DI	GCAATG	3 cut(s)	48, 108, 540
BseBI	CCWGG	2 cut(s)	356, 528
BseDI	CCNNGG	3 cut(s)	265, 299, 414
BseMI	GCAATG	3 cut(s)	48, 108, 540
BseMII	CTCAG	2 cut(s)	382, 526
BseNI	ACTGG	3 cut(s)	120, 336, 449
BseXI	GCAGC	2 cut(s)	265, 528
Bsh1236I	CGCG	2 cut(s)	283, 620
BshFI	GGCC	1 cut(s)	5
BsmI	GAATGC	1 cut(s)	26
BsnI	GGCC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	64, 560, 621
Bsp19I	CCATGG	1 cut(s)	299
BspACI	CCGC	1 cut(s)	403
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	381, 525
BspFNI	CGCG	2 cut(s)	283, 620
BspLI	GGNNCC	3 cut(s)	66, 141, 365
BspPI	GGATC	3 cut(s)	59, 72, 568
BsrDI	GCAATG	3 cut(s)	48, 108, 540
BsrI	ACTGG	3 cut(s)	120, 336, 449
BssECI	CCNNGG	3 cut(s)	265, 299, 414
BssMI	GATC	3 cut(s)	64, 560, 621
BssT1I	CCWWGG	3 cut(s)	265, 299, 414
Bst2UI	CCWGG	2 cut(s)	356, 528
Bst4CI	ACNGT	3 cut(s)	12, 352, 629
Bst6I	CTCTTC	1 cut(s)	81
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstBAI	YACGTR	1 cut(s)	221
BstC8I	GCNNGC	1 cut(s)	193
BstDEI	CTNAG	3 cut(s)	144, 368, 512
BstDSI	CCRYGG	1 cut(s)	299
BstFNI	CGCG	2 cut(s)	283, 620
BstHHI	GCGC	1 cut(s)	283
BstKTI	GATC	3 cut(s)	67, 563, 624
BstMBI	GATC	3 cut(s)	64, 560, 621
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 469, 506
BstNI	CCWGG	2 cut(s)	356, 528
BstSCI	CCNGG	2 cut(s)	354, 526
BstSFI	CTRYAG	1 cut(s)	625
BstUI	CGCG	2 cut(s)	283, 620
BstV1I	GCAGC	2 cut(s)	265, 528
BstV2I	GAAGAC	1 cut(s)	623
BstX2I	RGATCY	1 cut(s)	64
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	604
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	299
BtsIMutI	CAGTG	2 cut(s)	181, 343
Cac8I	GCNNGC	1 cut(s)	193
CfoI	GCGC	1 cut(s)	283
Cfr13I	GGNCC	1 cut(s)	139
CseI	GACGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	113, 419
CviAII	CATG	1 cut(s)	300
CviJI	RGCY	9 cut(s)	5, 148, 158, 181, 335, 366, 509, 519, 599
CviKI_1	RGCY	9 cut(s)	5, 148, 158, 181, 335, 366, 509, 519, 599
CviQI	GTAC	2 cut(s)	113, 419
DdeI	CTNAG	3 cut(s)	144, 368, 512
DpnI	GATC	3 cut(s)	66, 562, 623
DpnII	GATC	3 cut(s)	64, 560, 621
Eam1104I	CTCTTC	1 cut(s)	81
EarI	CTCTTC	1 cut(s)	81
Eco130I	CCWWGG	3 cut(s)	265, 299, 414
Eco32I	GATATC	1 cut(s)	574
Eco47I	GGWCC	1 cut(s)	139
Eco57I	CTGAAG	3 cut(s)	62, 407, 617
Eco72I	CACGTG	1 cut(s)	221
EcoO109I	RGGNCCY	1 cut(s)	139
EcoRII	CCWGG	2 cut(s)	354, 526
EcoRV	GATATC	1 cut(s)	574
EcoT14I	CCWWGG	3 cut(s)	265, 299, 414
ErhI	CCWWGG	3 cut(s)	265, 299, 414
FaeI	CATG	1 cut(s)	303
FaiI	YATR	2 cut(s)	301, 321
FatI	CATG	1 cut(s)	299
Fnu4HI	GCNGC	2 cut(s)	279, 517
Fsp4HI	GCNGC	2 cut(s)	279, 517
FspBI	CTAG	2 cut(s)	188, 330
GlaI	GCGC	1 cut(s)	282
GluI	GCNGC	2 cut(s)	279, 517
HaeIII	GGCC	1 cut(s)	5
HgaI	GACGC	1 cut(s)	107
HhaI	GCGC	1 cut(s)	283
Hin1II	CATG	1 cut(s)	303
Hin6I	GCGC	1 cut(s)	281
HinP1I	GCGC	1 cut(s)	281
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	1 cut(s)	226
HphI	GGTGA	4 cut(s)	176, 376, 403, 443
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	4 cut(s)	64, 69, 371, 426
Hpy188III	TCNNGA	2 cut(s)	80, 569
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	353, 421
HpyCH4III	ACNGT	3 cut(s)	12, 352, 629
HpyCH4IV	ACGT	1 cut(s)	220
HpyCH4V	TGCA	8 cut(s)	26, 95, 135, 463, 494, 545, 551, 593
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 469, 506
HpyF3I	CTNAG	3 cut(s)	144, 368, 512
HpySE526I	ACGT	1 cut(s)	220
Hsp92II	CATG	1 cut(s)	303
HspAI	GCGC	1 cut(s)	281
Kzo9I	GATC	3 cut(s)	64, 560, 621
LmnI	GCTCC	1 cut(s)	363
Lsp1109I	GCAGC	2 cut(s)	265, 528
LweI	GCATC	2 cut(s)	68, 279
MaeI	CTAG	2 cut(s)	188, 330
MaeII	ACGT	1 cut(s)	220
MaeIII	GTNAC	3 cut(s)	37, 223, 382
MalI	GATC	3 cut(s)	66, 562, 623
MboI	GATC	3 cut(s)	64, 560, 621
MboII	GAAGA	3 cut(s)	36, 68, 623
MflI	RGATCY	1 cut(s)	64
MluCI	AATT	2 cut(s)	246, 342
MlyI	GAGTC	1 cut(s)	220
MmeI	TCCRAC	1 cut(s)	414
MnlI	CCTC	6 cut(s)	16, 245, 324, 377, 397, 416
MseI	TTAA	4 cut(s)	120, 258, 309, 489
MspR9I	CCNGG	2 cut(s)	356, 528
Mva1269I	GAATGC	1 cut(s)	26
MvaI	CCWGG	2 cut(s)	356, 528
MvnI	CGCG	2 cut(s)	283, 620
MwoI	GCNNNNNNNGC	3 cut(s)	32, 469, 506
NcoI	CCATGG	1 cut(s)	299
NdeII	GATC	3 cut(s)	64, 560, 621
NlaIII	CATG	1 cut(s)	303
NlaIV	GGNNCC	3 cut(s)	66, 141, 365
NmuCI	GTSAC	2 cut(s)	223, 382
PctI	GAATGC	1 cut(s)	26
PfoI	TCCNGGA	1 cut(s)	354
PkrI	GCNGC	2 cut(s)	280, 518
PleI	GAGTC	1 cut(s)	220
PmaCI	CACGTG	1 cut(s)	221
PmlI	CACGTG	1 cut(s)	221
PpsI	GAGTC	1 cut(s)	220
Ppu21I	YACGTR	1 cut(s)	221
PpuMI	RGGWCCY	1 cut(s)	139
Psp5II	RGGWCCY	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	354, 526
PspCI	CACGTG	1 cut(s)	221
PspGI	CCWGG	2 cut(s)	354, 526
PspN4I	GGNNCC	3 cut(s)	66, 141, 365
PspPI	GGNCC	1 cut(s)	139
PspPPI	RGGWCCY	1 cut(s)	139
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	114, 420
RsaNI	GTAC	2 cut(s)	113, 419
SaqAI	TTAA	4 cut(s)	120, 258, 309, 489
SatI	GCNGC	2 cut(s)	279, 517
Sau3AI	GATC	3 cut(s)	64, 560, 621
Sau96I	GGNCC	1 cut(s)	139
ScaI	AGTACT	1 cut(s)	114
SchI	GAGTC	1 cut(s)	220
ScrFI	CCNGG	2 cut(s)	356, 528
SetI	ASST	8 cut(s)	150, 189, 223, 389, 420, 457, 511, 532
SfaNI	GCATC	2 cut(s)	68, 279
SfcI	CTRYAG	1 cut(s)	625
SinI	GGWCC	1 cut(s)	139
Sse9I	AATT	2 cut(s)	246, 342
SsiI	CCGC	1 cut(s)	403
SspI	AATATT	1 cut(s)	478
SspMI	CTAG	2 cut(s)	188, 330
StyD4I	CCNGG	2 cut(s)	354, 526
StyI	CCWWGG	3 cut(s)	265, 299, 414
TaaI	ACNGT	3 cut(s)	12, 352, 629
TaiI	ACGT	1 cut(s)	223
TasI	AATT	2 cut(s)	246, 342
TatI	WGTACW	1 cut(s)	112
Tru1I	TTAA	4 cut(s)	120, 258, 309, 489
Tru9I	TTAA	4 cut(s)	120, 258, 309, 489
TscAI	CASTG	2 cut(s)	181, 343
TseFI	GTSAC	2 cut(s)	223, 382
TseI	GCWGC	2 cut(s)	278, 516
Tsp45I	GTSAC	2 cut(s)	223, 382
TspRI	CASTG	2 cut(s)	181, 343
VpaK11BI	GGWCC	1 cut(s)	139
XapI	RAATTY	1 cut(s)	342
XcmI	CCANNNNNNNNNTGG	1 cut(s)	476
XspI	CTAG	2 cut(s)	188, 330
ZrmI	AGTACT	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.