Rorug05G0034400

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000812
Physical Location & Seq
Reverse (-)
2404010 .. 2407138
3129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0034400.1

Sequence Viewer

Length: 669 bp
ATGGATTTGGATCGTCAATGCACCAGTGACAAGTCTCATTCAGTTTCTGTAGGAGTTGAGTATGATGAAGAACATAGGTGTCAGAATGCTTCCAATTACCATGAAAAGCATAAAACCAAAAAAAAAGAATTAGATGAAGATGGAGACAAGGTGATATGCATCATGAGTTCTTTCTCTGATAGTCATGAAATTGAAAAAGATGGAGATAAAGAATCCTCAACGAGGAATTTACGACAAGAAGACTCGACATATTTGGACGTCAGAGCTGGTAACAGTGAGATATGTGAAGAGGACATTGATCGATTTTTAGCTAAATCATGTTGTGGTGGTTCTGCACAGAAGACTACTCAAAGACAAACAACGTTGAGAGAACTGCTGCAACTGCCTGCAGATTGTGGATCCCCTTCAGGAGTAATGTCTCAGAGTAAAATATTTAAGCATTTGGAGCACCAAGAACAAAAACAGTTGGAGAAGCAAAAAGCTGTGTCTAAACAATATAAATGGTGGGGAATTTTGAAAACTAAGGGGCTTTGTTGGAGTTCCTTATTTAAACCAGAAGATAGAGAAAACAAGAAGCCTCAAAAGAAGAATAAGAATTGTGTTTTTGGCAAGGTAACAAACTCTGCAGAAAGAACGAAACTTCTAAAAGCAAGTGGTCACATAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

222

Amino Acids

25.3

Weight (kDa)

8.29

Isoelectric Point (pI)

50.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 261
AclI AACGTT 1 cut(s) 362
AclWI GGATC 3 cut(s) 18, 393, 406
AcsI RAATTY 2 cut(s) 226, 510
AcuI CTGAAG 1 cut(s) 390
AcyI GRCGYC 1 cut(s) 258
AfiI CCNNNNNNNGG 1 cut(s) 222
AgsI TTSAA 2 cut(s) 194, 517
AluBI AGCT 3 cut(s) 266, 311, 482
AluI AGCT 3 cut(s) 266, 311, 482
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 3 cut(s) 39, 138, 423
AlwI GGATC 3 cut(s) 18, 393, 406
AlwNI CAGNNNCTG 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 376
ApoI RAATTY 2 cut(s) 226, 510
AsuHPI GGTGA 1 cut(s) 163
BamHI GGATCC 1 cut(s) 398
BbsI GAAGAC 2 cut(s) 246, 347
Bbv12I GWGCWC 1 cut(s) 450
BbvI GCAGC 1 cut(s) 363
BccI CCATC 2 cut(s) 134, 194
BcoDI GTCTC 3 cut(s) 39, 138, 423
BfmI CTRYAG 3 cut(s) 48, 387, 624
BisI GCNGC 1 cut(s) 377
BlsI GCNGC 1 cut(s) 378
BmiI GGNNCC 1 cut(s) 400
BmsI GCATC 1 cut(s) 168
BpiI GAAGAC 2 cut(s) 246, 347
Bsa29I ATCGAT 1 cut(s) 301
BsaBI GATNNNNATC 2 cut(s) 9, 158
BsaHI GRCGYC 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 135, 165
Bsc4I CCNNNNNNNGG 1 cut(s) 222
Bse1I ACTGG 1 cut(s) 24
Bse8I GATNNNNATC 2 cut(s) 9, 158
BseCI ATCGAT 1 cut(s) 301
BseJI GATNNNNATC 2 cut(s) 9, 158
BseLI CCNNNNNNNGG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 434
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 363
BsgI GTGCAG 1 cut(s) 318
BshVI ATCGAT 1 cut(s) 301
BsiHKAI GWGCWC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 222
BsmAI GTCTC 3 cut(s) 39, 138, 423
BsmI GAATGC 1 cut(s) 91
Bsp1286I GDGCHC 1 cut(s) 450
Bsp143I GATC 3 cut(s) 10, 298, 398
BspCNI CTCAG 1 cut(s) 433
BspDI ATCGAT 1 cut(s) 301
BspHI TCATGA 2 cut(s) 162, 184
BspLI GGNNCC 1 cut(s) 400
BspMAI CTGCAG 2 cut(s) 391, 628
BspPI GGATC 3 cut(s) 18, 393, 406
BsrI ACTGG 1 cut(s) 24
BssMI GATC 3 cut(s) 10, 298, 398
BssNI GRCGYC 1 cut(s) 258
Bst4CI ACNGT 2 cut(s) 275, 465
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 1 cut(s) 387
BstDEI CTNAG 2 cut(s) 420, 522
BstENI CCTNNNNNAGG 1 cut(s) 220
BstKTI GATC 3 cut(s) 13, 301, 401
BstMAI GTCTC 3 cut(s) 39, 138, 423
BstMBI GATC 3 cut(s) 10, 298, 398
BstMWI GCNNNNNNNGC 2 cut(s) 382, 445
BstSFI CTRYAG 3 cut(s) 48, 387, 624
BstV1I GCAGC 1 cut(s) 363
BstV2I GAAGAC 2 cut(s) 246, 347
BstX2I RGATCY 1 cut(s) 398
BstYI RGATCY 1 cut(s) 398
Bsu15I ATCGAT 1 cut(s) 301
BsuTUI ATCGAT 1 cut(s) 301
BtsIMutI CAGTG 2 cut(s) 31, 280
Cac8I GCNNGC 1 cut(s) 387
CaiI CAGNNNCTG 1 cut(s) 47
CciI TCATGA 2 cut(s) 162, 184
ClaI ATCGAT 1 cut(s) 301
CviAII CATG 4 cut(s) 101, 163, 185, 318
CviJI RGCY 5 cut(s) 266, 311, 482, 529, 577
CviKI_1 RGCY 5 cut(s) 266, 311, 482, 529, 577
DdeI CTNAG 2 cut(s) 420, 522
DpnI GATC 3 cut(s) 12, 300, 400
DpnII GATC 3 cut(s) 10, 298, 398
DraI TTTAAA 1 cut(s) 550
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
Eco57I CTGAAG 1 cut(s) 390
EcoNI CCTNNNNNAGG 1 cut(s) 220
EcoT22I ATGCAT 1 cut(s) 161
FaeI CATG 4 cut(s) 104, 166, 188, 321
FatI CATG 4 cut(s) 100, 162, 184, 317
Fnu4HI GCNGC 1 cut(s) 377
Fsp4HI GCNGC 1 cut(s) 377
GluI GCNGC 1 cut(s) 377
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 4 cut(s) 104, 166, 188, 321
HinfI GANTC 2 cut(s) 212, 242
HphI GGTGA 1 cut(s) 163
Hpy188I TCNGA 4 cut(s) 84, 178, 263, 423
Hpy188III TCNNGA 3 cut(s) 163, 185, 408
HpyAV CCTTC 1 cut(s) 414
HpyCH4III ACNGT 2 cut(s) 275, 465
HpyCH4IV ACGT 2 cut(s) 258, 362
HpyCH4V TGCA 6 cut(s) 21, 159, 335, 379, 389, 626
HpyF10VI GCNNNNNNNGC 2 cut(s) 382, 445
HpyF3I CTNAG 2 cut(s) 420, 522
HpySE526I ACGT 2 cut(s) 258, 362
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 4 cut(s) 104, 166, 188, 321
Kzo9I GATC 3 cut(s) 10, 298, 398
LmnI GCTCC 1 cut(s) 445
LpnPI CCDG 5 cut(s) 37, 252, 393, 399, 567
Lsp1109I GCAGC 1 cut(s) 363
LweI GCATC 1 cut(s) 168
MaeII ACGT 2 cut(s) 258, 362
MaeIII GTNAC 4 cut(s) 26, 269, 613, 656
MalI GATC 3 cut(s) 12, 300, 400
MboI GATC 3 cut(s) 10, 298, 398
MboII GAAGA 7 cut(s) 80, 149, 251, 299, 352, 569, 598
MflI RGATCY 1 cut(s) 398
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 6 cut(s) 94, 128, 189, 226, 510, 595
MlyI GAGTC 1 cut(s) 236
MmeI TCCRAC 2 cut(s) 447, 515
MnlI CCTC 4 cut(s) 216, 226, 283, 588
Mph1103I ATGCAT 1 cut(s) 161
MseI TTAA 2 cut(s) 435, 549
Mva1269I GAATGC 1 cut(s) 91
MwoI GCNNNNNNNGC 2 cut(s) 382, 445
NdeII GATC 3 cut(s) 10, 298, 398
NlaIII CATG 4 cut(s) 104, 166, 188, 321
NlaIV GGNNCC 1 cut(s) 400
NmuCI GTSAC 2 cut(s) 26, 656
NsiI ATGCAT 1 cut(s) 161
PagI TCATGA 2 cut(s) 162, 184
PctI GAATGC 1 cut(s) 91
PfeI GAWTC 1 cut(s) 212
PkrI GCNGC 1 cut(s) 378
PleI GAGTC 1 cut(s) 236
PpsI GAGTC 1 cut(s) 236
Psp1406I AACGTT 1 cut(s) 362
PspN4I GGNNCC 1 cut(s) 400
PstI CTGCAG 2 cut(s) 391, 628
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 398
SaqAI TTAA 2 cut(s) 435, 549
SatI GCNGC 1 cut(s) 377
Sau3AI GATC 3 cut(s) 10, 298, 398
SchI GAGTC 1 cut(s) 236
SduI GDGCHC 1 cut(s) 450
SetI ASST 8 cut(s) 80, 153, 261, 268, 313, 365, 484, 615
SfaNI GCATC 1 cut(s) 168
SfcI CTRYAG 3 cut(s) 48, 387, 624
Sse9I AATT 6 cut(s) 94, 128, 189, 226, 510, 595
SspI AATATT 1 cut(s) 432
TaaI ACNGT 2 cut(s) 275, 465
TaiI ACGT 2 cut(s) 261, 365
TaqI TCGA 2 cut(s) 245, 301
TasI AATT 6 cut(s) 94, 128, 189, 226, 510, 595
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 2 cut(s) 435, 549
Tru9I TTAA 2 cut(s) 435, 549
TscAI CASTG 2 cut(s) 31, 280
TseFI GTSAC 2 cut(s) 26, 656
TseI GCWGC 1 cut(s) 376
Tsp45I GTSAC 2 cut(s) 26, 656
TspDTI ATGAA 4 cut(s) 81, 117, 150, 201
TspRI CASTG 2 cut(s) 31, 280
XagI CCTNNNNNAGG 1 cut(s) 220
XapI RAATTY 2 cut(s) 226, 510
ZraI GACGTC 1 cut(s) 259
Zsp2I ATGCAT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.