Rroxscaffold_1G00060000

germin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000812
Physical Location & Seq
Reverse (-)
82141853 .. 82142527
675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060000.1

Sequence Viewer

Length: 207 bp
ATGGCCATAGTAGGACTTGTGCATTTCCAACACAACGTTGGAAAGGTTAATGCAGTCGCCATTGCCGCTCTTAGCAGCCAAAATCCAGGTGTTATTAGCATCGCCAATTCAGTATTTGGATCTAAGCCTGCTATCTCTGCTGATGTTCTTGCGAAGGCTTTCCAAGTGGATAAGGACACAATCTGCATTCTTCAGTCAAAGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cupin_1

Protein Analysis

68

Amino Acids

7.05

Weight (kDa)

9.04

Isoelectric Point (pI)

20.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cupin_1 PF00190 5 - 60 1.3e-14 Cupin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 68
AciI CCGC 1 cut(s) 66
AclI AACGTT 1 cut(s) 36
AclWI GGATC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 3
AcuI CTGAAG 1 cut(s) 176
AjnI CCWGG 1 cut(s) 85
AlwI GGATC 1 cut(s) 127
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 75
Asp700I GAANNNNTTC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 5
BbvI GCAGC 1 cut(s) 87
BciT130I CCWGG 1 cut(s) 87
BfaI CTAG 1 cut(s) 205
BisI GCNGC 2 cut(s) 66, 76
BlsI GCNGC 2 cut(s) 67, 77
Bme1390I CCNGG 1 cut(s) 87
BmrFI CCNGG 1 cut(s) 87
BmsI GCATC 1 cut(s) 108
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 87
BseMI GCAATG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 87
BshFI GGCC 1 cut(s) 5
BsmI GAATGC 1 cut(s) 186
BsnI GGCC 1 cut(s) 5
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 66
BspANI GGCC 1 cut(s) 5
BspPI GGATC 1 cut(s) 127
BsrBI CCGCTC 1 cut(s) 68
BsrDI GCAATG 1 cut(s) 60
BssMI GATC 1 cut(s) 119
Bst2UI CCWGG 1 cut(s) 87
BstC8I GCNNGC 1 cut(s) 129
BstDEI CTNAG 2 cut(s) 71, 123
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 2 cut(s) 65, 137
BstNI CCWGG 1 cut(s) 87
BstSCI CCNGG 1 cut(s) 85
BstV1I GCAGC 1 cut(s) 87
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 1 cut(s) 5
BtgZI GCGATG 1 cut(s) 85
Cac8I GCNNGC 1 cut(s) 129
CviJI RGCY 4 cut(s) 5, 78, 127, 158
CviKI_1 RGCY 4 cut(s) 5, 78, 127, 158
DdeI CTNAG 2 cut(s) 71, 123
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 3
Eco57I CTGAAG 1 cut(s) 176
EcoRII CCWGG 1 cut(s) 85
FaiI YATR 1 cut(s) 8
Fnu4HI GCNGC 2 cut(s) 66, 76
Fsp4HI GCNGC 2 cut(s) 66, 76
FspBI CTAG 1 cut(s) 205
GluI GCNGC 2 cut(s) 66, 76
HaeIII GGCC 1 cut(s) 5
HpyAV CCTTC 1 cut(s) 148
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 22, 53, 186
HpyF10VI GCNNNNNNNGC 2 cut(s) 65, 137
HpyF3I CTNAG 2 cut(s) 71, 123
HpySE526I ACGT 1 cut(s) 36
Kzo9I GATC 1 cut(s) 119
LpnPI CCDG 3 cut(s) 72, 99, 141
Lsp1109I GCAGC 1 cut(s) 87
LweI GCATC 1 cut(s) 108
MaeI CTAG 1 cut(s) 205
MaeII ACGT 1 cut(s) 36
MalI GATC 1 cut(s) 121
MbiI CCGCTC 1 cut(s) 68
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 182
MflI RGATCY 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 106
MluNI TGGCCA 1 cut(s) 5
MmeI TCCRAC 2 cut(s) 19, 52
Mox20I TGGCCA 1 cut(s) 5
MroXI GAANNNNTTC 1 cut(s) 158
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 48
Msp20I TGGCCA 1 cut(s) 5
MspR9I CCNGG 1 cut(s) 87
Mva1269I GAATGC 1 cut(s) 186
MvaI CCWGG 1 cut(s) 87
MwoI GCNNNNNNNGC 2 cut(s) 65, 137
NdeII GATC 1 cut(s) 119
PctI GAATGC 1 cut(s) 186
PdmI GAANNNNTTC 1 cut(s) 158
PkrI GCNGC 2 cut(s) 67, 77
Psp1406I AACGTT 1 cut(s) 36
Psp6I CCWGG 1 cut(s) 85
PspGI CCWGG 1 cut(s) 85
PsuI RGATCY 1 cut(s) 119
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 66, 76
Sau3AI GATC 1 cut(s) 119
ScrFI CCNGG 1 cut(s) 87
SetI ASST 3 cut(s) 39, 48, 91
SfaNI GCATC 1 cut(s) 108
SgeI CNNG 6 cut(s) 29, 98, 99, 140, 161, 176
Sse9I AATT 1 cut(s) 106
SsiI CCGC 1 cut(s) 66
SspMI CTAG 1 cut(s) 205
StyD4I CCNGG 1 cut(s) 85
TaiI ACGT 1 cut(s) 39
TasI AATT 1 cut(s) 106
TauI GCSGC 1 cut(s) 68
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 1 cut(s) 75
XcmI CCANNNNNNNNNTGG 1 cut(s) 35
XmnI GAANNNNTTC 1 cut(s) 158
XspI CTAG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.