Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Forward (+)

15590693 .. 15591050

Gene Structure 358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G38950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGGAGATGTTTTTGTGTTTCCAGAGGGATTCATTCACTTCCAATTCAATGTGGGACGATCTCCAGCGGTTGCATTCGCTGCTTTGAGCAGCCAAAACCCCGGTGTCATCTCTATTGTCAACACCGTCTTTGGGTCTAACCCACCAACTAATCTGAATGTTCTTGCTAAGGGATTCCAGTTGGACCCTAGGGTGGCCATGCTCATGGATCTACAAGCCAAAATTCTGATCATGAAATACGAAATAGACCATGAGTTACCGTTCATTGTAATGCCACGATGTGATAGTTGCCTTTACTTTCAAGTGTCTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006950 GO:0006970 GO:0008150 GO:0009628 GO:0009651 GO:0030312 GO:0044464 GO:0050896 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

104

Amino Acids

11.51

Weight (kDa)

5.45

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	2 - 64	1.5e-18	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	68
AclWI	GGATC	1 cut(s)	216
AcoI	YGGCCR	1 cut(s)	195
AcsI	RAATTY	1 cut(s)	222
AdeI	CACNNNGTG	1 cut(s)	281
AfiI	CCNNNNNNNGG	2 cut(s)	132, 193
AgsI	TTSAA	2 cut(s)	49, 302
AlwI	GGATC	1 cut(s)	216
AoxI	GGCC	1 cut(s)	195
ApeKI	GCWGC	2 cut(s)	80, 90
ApoI	RAATTY	1 cut(s)	222
AspA2I	CCTAGG	1 cut(s)	188
AspS9I	GGNCC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	184
AvrII	CCTAGG	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	197
BbsI	GAAGAC	1 cut(s)	300
BbvI	GCAGC	2 cut(s)	67, 102
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	1 cut(s)	102
BfaI	CTAG	1 cut(s)	189
BisI	GCNGC	2 cut(s)	81, 91
BlnI	CCTAGG	1 cut(s)	188
BlsI	GCNGC	2 cut(s)	82, 92
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	1 cut(s)	186
BmrFI	CCNGG	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	48
Bpu10I	CCTNAGC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	102
BsaJI	CCNNGG	2 cut(s)	100, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	132, 193
Bse1I	ACTGG	1 cut(s)	178
BseDI	CCNNGG	2 cut(s)	100, 188
BseLI	CCNNNNNNNGG	2 cut(s)	132, 193
BseNI	ACTGG	1 cut(s)	178
BseXI	GCAGC	2 cut(s)	67, 102
BshFI	GGCC	1 cut(s)	197
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	69
BslI	CCNNNNNNNGG	2 cut(s)	132, 193
BsmFI	GGGAC	1 cut(s)	69
BsmI	GAATGC	1 cut(s)	74
BsnI	GGCC	1 cut(s)	197
Bsp143I	GATC	3 cut(s)	59, 208, 228
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	197
BspHI	TCATGA	2 cut(s)	231, 311
BspLI	GGNNCC	1 cut(s)	186
BspPI	GGATC	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	178
BssECI	CCNNGG	2 cut(s)	100, 188
BssMI	GATC	3 cut(s)	59, 208, 228
BssT1I	CCWWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	127, 261
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstDEI	CTNAG	1 cut(s)	168
BstKTI	GATC	3 cut(s)	62, 211, 231
BstMBI	GATC	3 cut(s)	59, 208, 228
BstMWI	GCNNNNNNNGC	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	2 cut(s)	67, 102
BstV2I	GAAGAC	1 cut(s)	300
BstX2I	RGATCY	1 cut(s)	208
BstXI	CCANNNNNNTGG	1 cut(s)	205
BstYI	RGATCY	1 cut(s)	208
BsuRI	GGCC	1 cut(s)	197
CciI	TCATGA	2 cut(s)	231, 311
Cfr13I	GGNCC	1 cut(s)	184
CviAII	CATG	5 cut(s)	199, 205, 232, 251, 312
CviJI	RGCY	3 cut(s)	93, 197, 218
CviKI_1	RGCY	3 cut(s)	93, 197, 218
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	3 cut(s)	61, 210, 230
DpnII	GATC	3 cut(s)	59, 208, 228
DraIII	CACNNNGTG	1 cut(s)	281
EaeI	YGGCCR	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	188
Eco47I	GGWCC	1 cut(s)	184
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	5 cut(s)	202, 208, 235, 254, 315
FaiI	YATR	5 cut(s)	200, 206, 233, 252, 313
FaqI	GGGAC	1 cut(s)	69
FatI	CATG	5 cut(s)	198, 204, 231, 250, 311
FbaI	TGATCA	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	81, 91
Fsp4HI	GCNGC	2 cut(s)	81, 91
FspBI	CTAG	1 cut(s)	189
GluI	GCNGC	2 cut(s)	81, 91
GsuI	CTGGAG	1 cut(s)	48
HaeIII	GGCC	1 cut(s)	197
HapII	CCGG	1 cut(s)	102
Hin1II	CATG	5 cut(s)	202, 208, 235, 254, 315
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HinfI	GANTC	2 cut(s)	30, 174
HpaII	CCGG	1 cut(s)	102
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	156, 228
Hpy188III	TCNNGA	3 cut(s)	23, 232, 312
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	2 cut(s)	127, 261
HpyCH4V	TGCA	1 cut(s)	74
HpyF10VI	GCNNNNNNNGC	1 cut(s)	80
HpyF3I	CTNAG	1 cut(s)	168
Hsp92II	CATG	5 cut(s)	202, 208, 235, 254, 315
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	3 cut(s)	59, 208, 228
LpnPI	CCDG	4 cut(s)	36, 78, 115, 191
Lsp1109I	GCAGC	2 cut(s)	67, 102
MaeI	CTAG	1 cut(s)	189
MaeIII	GTNAC	1 cut(s)	255
MalI	GATC	3 cut(s)	61, 210, 230
MboI	GATC	3 cut(s)	59, 208, 228
MboII	GAAGA	1 cut(s)	300
MflI	RGATCY	1 cut(s)	208
MlsI	TGGCCA	1 cut(s)	197
MluCI	AATT	2 cut(s)	44, 222
MluNI	TGGCCA	1 cut(s)	197
MmeI	TCCRAC	1 cut(s)	162
MnlI	CCTC	1 cut(s)	19
Mox20I	TGGCCA	1 cut(s)	197
MscI	TGGCCA	1 cut(s)	197
MslI	CAYNNNNRTG	2 cut(s)	203, 269
Msp20I	TGGCCA	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	68
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	102
Mva1269I	GAATGC	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	80
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	3 cut(s)	59, 208, 228
NlaIII	CATG	5 cut(s)	202, 208, 235, 254, 315
NlaIV	GGNNCC	1 cut(s)	186
PagI	TCATGA	2 cut(s)	231, 311
PctI	GAATGC	1 cut(s)	74
PfeI	GAWTC	2 cut(s)	30, 174
PkrI	GCNGC	2 cut(s)	82, 92
PspN4I	GGNNCC	1 cut(s)	186
PspPI	GGNCC	1 cut(s)	184
PsuI	RGATCY	1 cut(s)	208
RseI	CAYNNNNRTG	2 cut(s)	203, 269
SatI	GCNGC	2 cut(s)	81, 91
Sau3AI	GATC	3 cut(s)	59, 208, 228
Sau96I	GGNCC	1 cut(s)	184
ScrFI	CCNGG	1 cut(s)	102
SinI	GGWCC	1 cut(s)	184
SmiMI	CAYNNNNRTG	2 cut(s)	203, 269
Sse9I	AATT	2 cut(s)	44, 222
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	1 cut(s)	189
StyD4I	CCNGG	1 cut(s)	100
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	2 cut(s)	127, 261
TasI	AATT	2 cut(s)	44, 222
TfiI	GAWTC	2 cut(s)	30, 174
TseI	GCWGC	2 cut(s)	80, 90
TspDTI	ATGAA	4 cut(s)	22, 248, 253, 300
VpaK11BI	GGWCC	1 cut(s)	184
XapI	RAATTY	1 cut(s)	222
XmaJI	CCTAGG	1 cut(s)	188
XspI	CTAG	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.