Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0000812

Physical Location & Seq

Genomic Coordinates Forward (+)

10644725 .. 10645039

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g18471.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGGAAGGCACTCTCTACGTTGGCTTCGTCACATCCAACTCTGACAACGGCAACAAGCTATTCACCAAAGTGTTGTACCCTGGAGATGTGTTTGTCTTCCCGGTTGGTCTTATTCACTTCCAGTTCAACATCGGAAAGGTCAAAGCCATGGCCATTGCCGGTCTTAGCAGCCAGAACCCAGGTGTCATCACCATAGCCAACGCAGTTTTCGGCTCCAAACCTCCGATCAAGCTTGATGTTCTCACCAAGGCCTTCCAAGTTGACAACAATGTCGTTCAGTATCTCCAGAACCAGTTCTGGTATGACAACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cupin_1

Protein Analysis

105

Amino Acids

11.45

Weight (kDa)

7.98

Isoelectric Point (pI)

16.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	1 - 93	1.3e-28	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000812)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G38910 AT5G38910 AT5G38950
fragaria_vesca	FvH4_3g10650 FvH4_3g10650 FvH4_3g10670 FvH4_5g18471
malus_domestica	MD05G1269600.v1.1 MD05G1269700.v1.1 MD10G1247900.v1.1 MD10G1248200.v1.1 MD10G1248300.v1.1
prunus_persica	Prupe.4G094800_v2.0.a1 Prupe.4G094900_v2.0.a1 Prupe.4G095000_v2.0.a1 Prupe.4G095100_v2.0.a1 Prupe.4G095200_v2.0.a1
pyrus_communis	pycom05g25250
rosa_chinensis	RchiOBHm_Chr5g0009491 RchiOBHm_Chr5g0017351 RchiOBHm_Chr5g0017361 RchiOBHm_Chr5g0017381
rosa_laevigata	RLG00000031666 RLG00000032277 RLG00000032278 RLG00000032279 RLG00000032280
rosa_multiflora	Rmu_co8212706.1_g000001 Rmu_co8318621.1_g000001 Rmu_sc0002711.1_g000013 Rmu_sc0005223.1_g000003 Rmu_sc0005223.1_g000004 Rmu_sc0005319.1_g000002 Rmu_sc0005319.1_g000003 Rmu_sc0005319.1_g000005 Rmu_sc0005319.1_g000006 Rmu_sc0017540.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060000 Rroxscaffold_1G00060010
rosa_rugosa	Rorug04G0443600 Rorug05G0034300 Rorug05G0034300 Rorug05G0034300 Rorug05G0034400 Rorug05G0034700
rosa_samantha	Rh5AG074600 Rh5AG129400 Rh5AG129500 Rh5AG129700 Rh5AG129800 Rh5BG070400 Rh5BG127300 Rh5BG127400 Rh5BG127600 Rh5CG082800 Rh5CG140000 Rh5CG140100 Rh5CG140200 Rh5CG140400 Rh5DG070600 Rh5DG129700 Rh5DG129800 Rh5DG129900 Rh5DG130000
rosa_wichuraiana	Rw5G006910 Rw5G011180 Rw5G011190 Rw5G011200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	269
AcoI	YGGCCR	1 cut(s)	150
AfaI	GTAC	1 cut(s)	77
AgsI	TTSAA	1 cut(s)	127
AjnI	CCWGG	2 cut(s)	79, 178
AjuI	GAANNNNNNNTTGG	2 cut(s)	191, 223
AleI	CACNNNNGTG	1 cut(s)	68
AluBI	AGCT	2 cut(s)	58, 232
AluI	AGCT	2 cut(s)	58, 232
AoxI	GGCC	2 cut(s)	150, 249
ApeKI	GCWGC	1 cut(s)	168
Asp700I	GAANNNNTTC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	101
AsuHPI	GGTGA	3 cut(s)	55, 181, 235
BalI	TGGCCA	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	88
BbvI	GCAGC	1 cut(s)	180
BceAI	ACGGC	1 cut(s)	64
BciT130I	CCWGG	2 cut(s)	81, 180
BcnI	CCSGG	1 cut(s)	101
BfaI	CTAG	1 cut(s)	313
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	3 cut(s)	81, 101, 180
BmiI	GGNNCC	1 cut(s)	214
BmrFI	CCNGG	3 cut(s)	81, 101, 180
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	2 cut(s)	102, 269
BpuMI	CCSGG	1 cut(s)	101
BsaJI	CCNNGG	4 cut(s)	79, 147, 178, 246
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	2 cut(s)	121, 292
Bse3DI	GCAATG	1 cut(s)	153
BseBI	CCWGG	2 cut(s)	81, 180
BseDI	CCNNGG	4 cut(s)	79, 147, 178, 246
BseGI	GGATG	1 cut(s)	32
BseMI	GCAATG	1 cut(s)	153
BseNI	ACTGG	2 cut(s)	121, 292
BseXI	GCAGC	1 cut(s)	180
BshFI	GGCC	2 cut(s)	152, 251
BsiSI	CCGG	2 cut(s)	101, 159
BsnI	GGCC	2 cut(s)	152, 251
Bsp143I	GATC	1 cut(s)	225
Bsp19I	CCATGG	1 cut(s)	147
BspANI	GGCC	2 cut(s)	152, 251
BspLI	GGNNCC	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	2 cut(s)	121, 292
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	4 cut(s)	79, 147, 178, 246
BssMI	GATC	1 cut(s)	225
BssT1I	CCWWGG	2 cut(s)	147, 246
Bst2UI	CCWGG	2 cut(s)	81, 180
BstDEI	CTNAG	1 cut(s)	164
BstDSI	CCRYGG	1 cut(s)	147
BstF5I	GGATG	1 cut(s)	32
BstKTI	GATC	1 cut(s)	228
BstMBI	GATC	1 cut(s)	225
BstNI	CCWGG	2 cut(s)	81, 180
BstSCI	CCNGG	3 cut(s)	79, 99, 178
BstV1I	GCAGC	1 cut(s)	180
BstV2I	GAAGAC	1 cut(s)	88
BsuRI	GGCC	2 cut(s)	152, 251
BtgI	CCRYGG	1 cut(s)	147
BtsCI	GGATG	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	76
CviAII	CATG	1 cut(s)	148
CviJI	RGCY	9 cut(s)	24, 58, 146, 152, 171, 197, 213, 232, 251
CviKI_1	RGCY	9 cut(s)	24, 58, 146, 152, 171, 197, 213, 232, 251
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	1 cut(s)	227
DpnII	GATC	1 cut(s)	225
DrdI	GACNNNNNNGTC	1 cut(s)	269
DseDI	GACNNNNNNGTC	1 cut(s)	269
EaeI	YGGCCR	1 cut(s)	150
Eco130I	CCWWGG	2 cut(s)	147, 246
Eco147I	AGGCCT	1 cut(s)	251
EcoRII	CCWGG	2 cut(s)	79, 178
EcoT14I	CCWWGG	2 cut(s)	147, 246
ErhI	CCWWGG	2 cut(s)	147, 246
FaeI	CATG	1 cut(s)	151
FaiI	YATR	3 cut(s)	149, 194, 303
FatI	CATG	1 cut(s)	147
Fnu4HI	GCNGC	1 cut(s)	169
FokI	GGATG	1 cut(s)	19
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	1 cut(s)	313
GluI	GCNGC	1 cut(s)	169
GsuI	CTGGAG	2 cut(s)	102, 269
HaeIII	GGCC	2 cut(s)	152, 251
HapII	CCGG	2 cut(s)	101, 159
Hin1II	CATG	1 cut(s)	151
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	230
HpaII	CCGG	2 cut(s)	101, 159
HphI	GGTGA	3 cut(s)	55, 181, 235
Hpy166II	GTNNAC	1 cut(s)	262
Hpy188I	TCNGA	3 cut(s)	43, 134, 225
Hpy188III	TCNNGA	1 cut(s)	286
Hpy8I	GTNNAC	1 cut(s)	262
HpyAV	CCTTC	1 cut(s)	262
HpyCH4IV	ACGT	1 cut(s)	18
HpyF3I	CTNAG	1 cut(s)	164
HpySE526I	ACGT	1 cut(s)	18
Hsp92II	CATG	1 cut(s)	151
Kzo9I	GATC	1 cut(s)	225
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	1 cut(s)	180
MaeI	CTAG	1 cut(s)	313
MaeII	ACGT	1 cut(s)	18
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	1 cut(s)	227
MboI	GATC	1 cut(s)	225
MboII	GAAGA	1 cut(s)	88
MlsI	TGGCCA	1 cut(s)	152
MluNI	TGGCCA	1 cut(s)	152
MmeI	TCCRAC	1 cut(s)	60
MnlI	CCTC	1 cut(s)	231
Mox20I	TGGCCA	1 cut(s)	152
MroXI	GAANNNNTTC	1 cut(s)	293
MscI	TGGCCA	1 cut(s)	152
MslI	CAYNNNNRTG	1 cut(s)	68
Msp20I	TGGCCA	1 cut(s)	152
MspI	CCGG	2 cut(s)	101, 159
MspR9I	CCNGG	3 cut(s)	81, 101, 180
MvaI	CCWGG	2 cut(s)	81, 180
NciI	CCSGG	1 cut(s)	101
NcoI	CCATGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	225
NlaIII	CATG	1 cut(s)	151
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	251
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	293
PkrI	GCNGC	1 cut(s)	170
Psp6I	CCWGG	2 cut(s)	79, 178
PspGI	CCWGG	2 cut(s)	79, 178
PspN4I	GGNNCC	1 cut(s)	214
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
RseI	CAYNNNNRTG	1 cut(s)	68
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	225
ScrFI	CCNGG	3 cut(s)	81, 101, 180
SetI	ASST	6 cut(s)	21, 60, 141, 184, 223, 234
SmiMI	CAYNNNNRTG	1 cut(s)	68
SseBI	AGGCCT	1 cut(s)	251
SspMI	CTAG	1 cut(s)	313
StuI	AGGCCT	1 cut(s)	251
StyD4I	CCNGG	3 cut(s)	79, 99, 178
StyI	CCWWGG	2 cut(s)	147, 246
TaiI	ACGT	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	1 cut(s)	168
Tsp45I	GTSAC	1 cut(s)	28
XmnI	GAANNNNTTC	1 cut(s)	293
XspI	CTAG	1 cut(s)	313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.