AT5G39280

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
15730653 .. 15731790
1138 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39280.1

Sequence Viewer

Length: 828 bp
ATGAATCTCTTAGGAAAAATGATATATGTAGAAGGTTTTATGATGATAATGGCTACATTGTTAGTGTCCATGAGTTACGGTCATCGAGCGATGATTAATGATGTAGCCGAAGCACCCGTGTTTGACGATGTAGTCAGCCCAAACGGACTCGACAGTTCTTGGTATGATGCACGAGCAACATTTTACGGTGATATCCATGGTGGAGAAACTCAACAGGGAGCGTGTGGATACGGTGATCTATTCAAACAAGGCTATGGTCTAGAGACAGCGGCATTGAGCACAGCACTCTTCAACGAAGGGTATACATGTGGGGCTTGTTACCAGATCATGTGTGTGAACGATCCACAATGGTGTTTACCCGGATCCGTCAAGATCACAGCAACTAATTTCTGTCCACCAGATTACAGCAAAACCGAAGGCGTTTGGTGCAACCCACCACAAAAGCACTTTGACCTCTCCCTACCAATGTTCCTCAAGATCGCCCAATACAAAGCTGGAGTTGTCCCAGTTAAATACAGACGTATTTCTTGTGCAAGAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGATCTTGCCATACAATGTAGGAGGAGCTGGAGATATCAAGTTGATGCAAGTTAAAGGAGACAAGACCGGGTGGATAACAATGCAAAAGAACTGGGGACAAAACTGGACCACTGGTGTTAATTTGACTGGTCAGGGTATTTCATTCAGGGTTACGACGAGTGATGGGGTTACAAAAGATTTTAATAATGTGATGCCAAACAATTGGGGATTTGGACAGACTTTTGATGGAAAGATTAACTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

275

Amino Acids

30.32

Weight (kDa)

6.8

Isoelectric Point (pI)

23.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 89 - 172 1.4e-21 Lytic transglycolase
Expansin_C PF01357 183 - 260 1.1e-25 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 131
AccI GTMKAC 1 cut(s) 302
AciI CCGC 1 cut(s) 269
AclWI GGATC 3 cut(s) 335, 357, 370
AflIII ACRYGT 1 cut(s) 305
AgsI TTSAA 3 cut(s) 244, 292, 557
AleI CACNNNNGTG 1 cut(s) 349
AluBI AGCT 2 cut(s) 494, 611
AluI AGCT 2 cut(s) 494, 611
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 2 cut(s) 257, 636
AlwI GGATC 3 cut(s) 335, 357, 370
AseI ATTAAT 1 cut(s) 96
AspS9I GGNCC 1 cut(s) 690
AsuC2I CCSGG 2 cut(s) 360, 652
AsuHPI GGTGA 2 cut(s) 200, 245
AvaII GGWCC 1 cut(s) 690
BamHI GGATCC 1 cut(s) 362
BauI CACGAG 1 cut(s) 171
Bbv12I GWGCWC 1 cut(s) 281
BccI CCATC 2 cut(s) 740, 803
BciVI GTATCC 1 cut(s) 221
BcnI CCSGG 2 cut(s) 360, 652
BcoDI GTCTC 2 cut(s) 257, 636
BfaI CTAG 1 cut(s) 260
BfuI GTATCC 1 cut(s) 221
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 360, 652
Bme18I GGWCC 1 cut(s) 690
BmgT120I GGNCC 1 cut(s) 690
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 2 cut(s) 360, 652
BmrI ACTGGG 2 cut(s) 500, 685
BmsI GCATC 3 cut(s) 157, 618, 765
BmuI ACTGGG 2 cut(s) 500, 685
BpmI CTGGAG 2 cut(s) 516, 633
BpuEI CTTGAG 1 cut(s) 458
BpuMI CCSGG 2 cut(s) 360, 652
BsaJI CCNNGG 1 cut(s) 196
Bse1I ACTGG 6 cut(s) 506, 544, 680, 692, 700, 715
BseDI CCNNGG 1 cut(s) 196
BseNI ACTGG 6 cut(s) 506, 544, 680, 692, 700, 715
BseRI GAGGAG 1 cut(s) 621
BsiHKAI GWGCWC 1 cut(s) 281
BsiSI CCGG 2 cut(s) 360, 651
BslFI GGGAC 2 cut(s) 488, 693
BsmAI GTCTC 2 cut(s) 257, 636
BsmFI GGGAC 2 cut(s) 488, 693
Bsp1286I GDGCHC 1 cut(s) 281
Bsp143I GATC 7 cut(s) 235, 324, 340, 362, 372, 477, 585
Bsp19I CCATGG 1 cut(s) 196
BspACI CCGC 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 3 cut(s) 335, 357, 370
BsrI ACTGG 6 cut(s) 506, 544, 680, 692, 700, 715
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 7 cut(s) 235, 324, 340, 362, 372, 477, 585
BssNAI GTATAC 1 cut(s) 303
BssSI CACGAG 1 cut(s) 171
BssT1I CCWWGG 1 cut(s) 196
Bst1107I GTATAC 1 cut(s) 303
Bst2BI CACGAG 1 cut(s) 171
Bst4CI ACNGT 4 cut(s) 80, 155, 188, 233
Bst6I CTCTTC 1 cut(s) 293
BstDEI CTNAG 1 cut(s) 10
BstDSI CCRYGG 1 cut(s) 196
BstKTI GATC 7 cut(s) 238, 327, 343, 365, 375, 480, 588
BstMAI GTCTC 2 cut(s) 257, 636
BstMBI GATC 7 cut(s) 235, 324, 340, 362, 372, 477, 585
BstMWI GCNNNNNNNGC 1 cut(s) 426
BstNSI RCATGY 1 cut(s) 309
BstSCI CCNGG 2 cut(s) 358, 650
BstX2I RGATCY 1 cut(s) 362
BstXI CCANNNNNNTGG 1 cut(s) 786
BstYI RGATCY 1 cut(s) 362
BstZ17I GTATAC 1 cut(s) 303
BsuI GTATCC 1 cut(s) 221
BtgI CCRYGG 1 cut(s) 196
BtgZI GCGATG 1 cut(s) 104
BtsIMutI CAGTG 1 cut(s) 693
Cfr13I GGNCC 1 cut(s) 690
CviAII CATG 4 cut(s) 70, 197, 306, 328
CviJI RGCY 7 cut(s) 53, 107, 138, 252, 314, 494, 611
CviKI_1 RGCY 7 cut(s) 53, 107, 138, 252, 314, 494, 611
DdeI CTNAG 1 cut(s) 10
DpnI GATC 7 cut(s) 237, 326, 342, 364, 374, 479, 587
DpnII GATC 7 cut(s) 235, 324, 340, 362, 372, 477, 585
DrdI GACNNNNNNGTC 1 cut(s) 131
DseDI GACNNNNNNGTC 1 cut(s) 131
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
Eco130I CCWWGG 1 cut(s) 196
Eco32I GATATC 2 cut(s) 193, 619
Eco47I GGWCC 1 cut(s) 690
EcoRV GATATC 2 cut(s) 193, 619
EcoT14I CCWWGG 1 cut(s) 196
ErhI CCWWGG 1 cut(s) 196
FaeI CATG 4 cut(s) 73, 200, 309, 331
FalI AAGNNNNNCTT 1 cut(s) 806
FaqI GGGAC 2 cut(s) 488, 693
FatI CATG 4 cut(s) 69, 196, 305, 327
FblI GTMKAC 1 cut(s) 302
Fnu4HI GCNGC 1 cut(s) 270
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 1 cut(s) 260
GluI GCNGC 1 cut(s) 270
GsuI CTGGAG 2 cut(s) 516, 633
HapII CCGG 2 cut(s) 360, 651
Hin1II CATG 4 cut(s) 73, 200, 309, 331
HinfI GANTC 2 cut(s) 4, 147
HpaII CCGG 2 cut(s) 360, 651
HphI GGTGA 2 cut(s) 200, 245
Hpy166II GTNNAC 4 cut(s) 303, 337, 356, 395
Hpy188III TCNNGA 3 cut(s) 260, 370, 475
Hpy8I GTNNAC 4 cut(s) 303, 337, 356, 395
Hpy99I CGWCG 1 cut(s) 742
HpyAV CCTTC 3 cut(s) 26, 290, 410
HpyCH4III ACNGT 4 cut(s) 80, 155, 188, 233
HpyCH4IV ACGT 1 cut(s) 520
HpyCH4V TGCA 5 cut(s) 170, 429, 533, 631, 667
HpyF10VI GCNNNNNNNGC 1 cut(s) 426
HpyF3I CTNAG 1 cut(s) 10
HpySE526I ACGT 1 cut(s) 520
Hsp92II CATG 4 cut(s) 73, 200, 309, 331
Kzo9I GATC 7 cut(s) 235, 324, 340, 362, 372, 477, 585
LmnI GCTCC 2 cut(s) 218, 608
LweI GCATC 3 cut(s) 157, 618, 765
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 520
MaeIII GTNAC 4 cut(s) 74, 317, 733, 751
MalI GATC 7 cut(s) 237, 326, 342, 364, 374, 479, 587
MboI GATC 7 cut(s) 235, 324, 340, 362, 372, 477, 585
MboII GAAGA 1 cut(s) 280
MfeI CAATTG 1 cut(s) 784
MflI RGATCY 1 cut(s) 362
MhlI GDGCHC 1 cut(s) 281
MluCI AATT 3 cut(s) 385, 703, 784
MlyI GAGTC 1 cut(s) 141
MnlI CCTC 3 cut(s) 464, 482, 599
MseI TTAA 7 cut(s) 96, 510, 581, 636, 702, 765, 819
MslI CAYNNNNRTG 2 cut(s) 332, 349
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 2 cut(s) 360, 651
MspR9I CCNGG 2 cut(s) 360, 652
MunI CAATTG 1 cut(s) 784
MwoI GCNNNNNNNGC 1 cut(s) 426
NciI CCSGG 2 cut(s) 360, 652
NcoI CCATGG 1 cut(s) 196
NdeII GATC 7 cut(s) 235, 324, 340, 362, 372, 477, 585
NlaIII CATG 4 cut(s) 73, 200, 309, 331
NlaIV GGNNCC 1 cut(s) 364
NspI RCATGY 1 cut(s) 309
OliI CACNNNNGTG 1 cut(s) 349
PciI ACATGT 1 cut(s) 305
PfeI GAWTC 1 cut(s) 4
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 1 cut(s) 141
PpsI GAGTC 1 cut(s) 141
PscI ACATGT 1 cut(s) 305
PshBI ATTAAT 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 690
PsuI RGATCY 1 cut(s) 362
RseI CAYNNNNRTG 2 cut(s) 332, 349
SaqAI TTAA 7 cut(s) 96, 510, 581, 636, 702, 765, 819
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 7 cut(s) 235, 324, 340, 362, 372, 477, 585
Sau96I GGNCC 1 cut(s) 690
SchI GAGTC 1 cut(s) 141
ScrFI CCNGG 2 cut(s) 360, 652
SduI GDGCHC 1 cut(s) 281
SetI ASST 5 cut(s) 37, 456, 496, 523, 613
SfaNI GCATC 3 cut(s) 157, 618, 765
SinI GGWCC 1 cut(s) 690
SmiMI CAYNNNNRTG 2 cut(s) 332, 349
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 3 cut(s) 385, 703, 784
SsiI CCGC 1 cut(s) 269
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 358, 650
StyI CCWWGG 1 cut(s) 196
TaaI ACNGT 4 cut(s) 80, 155, 188, 233
TaiI ACGT 1 cut(s) 523
TaqI TCGA 2 cut(s) 85, 150
TasI AATT 3 cut(s) 385, 703, 784
TauI GCSGC 1 cut(s) 272
TfiI GAWTC 1 cut(s) 4
Tru1I TTAA 7 cut(s) 96, 510, 581, 636, 702, 765, 819
Tru9I TTAA 7 cut(s) 96, 510, 581, 636, 702, 765, 819
TscAI CASTG 1 cut(s) 700
TspDTI ATGAA 2 cut(s) 17, 714
TspGWI ACGGA 2 cut(s) 159, 355
TspRI CASTG 1 cut(s) 700
VpaK11BI GGWCC 1 cut(s) 690
VspI ATTAAT 1 cut(s) 96
XbaI TCTAGA 1 cut(s) 259
XceI RCATGY 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 491
XmiI GTMKAC 1 cut(s) 302
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.