Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Forward (+)

65234730 .. 65235608

Gene Structure 879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0520300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 879 bp

ATGGATATTAAACCGGTGGAGTTTTTCGGAGGTGCTGTTCTAAGAACAGCATTCAGTGCACTCTATGTTGGCGTTGAAGATCTGATTGCCAAGAACCACTTCTTCAGAAGGCTCTTCAAAGACATCCAATCCAGGCTAGACACTCTGAAGCCACTGATGGCCGAGATGGCTCGGTCTAACCAGCAACTGTCTTACACACAGAACGATGAGCTTAGAGGTTTAGAAGAAGTACTAAAGGTCGGCGAAGAGCTTGTTCTAAAGTGTTCAAATGTTAGGCGGTGGGATCTCTACAGAAAGTACAAATATGCCACAAAACTTCTTACATGGGAAAAAGATCTTGAAACACAATTGCAGCTGCTGCAGGTGCATGGAATCAGGGATGGGAAGAAGACCGAGGAGGCAGTAGAGAATATAGGGGTTTCGACGGGGAAGATGCAGGCTTCTTTAGCAACTATCGATGTTTCTGTAGGGAGTGTGAAGGAGGGGGTCAACCAAATTTCTAGTACCCTGGAGGGCATGAAAGAGAATTTTGTGATACAAGACCGATCTGCTGAAAGTAAAGCTTGGTGTGCAGTCCCTGACGTTCCAGAGGTTATAGTTGGATTGGAAGCTCCTTTGAAGGATTTGAAGACAAAGCTTCTTGGGAATGATGGATTCTTAATGCTTGTGCTCACTGCTCCTGGAGGATGTGGGAAAACTACCTTGGCAACGAACTTTTGCAAAGATCAGGAAGTCAAAGGTATTGTGTACATATCTATGATGCACGGAAACGCGAAAATGCCCGCGTATCCTGTATCAAAACGGGAAACGGGTCGGAAACACCTCGGAAACGGTTTGGATACGTCTGTATCCAATGCGGAAACGCCAGAATGTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

292

Amino Acids

32.42

Weight (kDa)

7.59

Isoelectric Point (pI)

33.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RPW8	PF05659	7 - 133	2.4e-19	Arabidopsis broad-spectrum mildew resistance protein RPW8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	352
Acc36I	ACCTGC	1 cut(s)	352
AccII	CGCG	2 cut(s)	773, 785
AciI	CCGC	3 cut(s)	277, 783, 857
AclWI	GGATC	1 cut(s)	291
AcoI	YGGCCR	1 cut(s)	159
AcsI	RAATTY	2 cut(s)	495, 526
AcuI	CTGAAG	2 cut(s)	88, 167
AfaI	GTAC	4 cut(s)	231, 299, 505, 749
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	6 cut(s)	77, 118, 267, 341, 619, 628
AjnI	CCWGG	3 cut(s)	131, 507, 679
AjuI	GAANNNNNNNTTGG	4 cut(s)	83, 115, 686, 718
AloI	GAACNNNNNNTCC	2 cut(s)	21, 53
AluBI	AGCT	6 cut(s)	211, 250, 355, 563, 611, 637
AluI	AGCT	6 cut(s)	211, 250, 355, 563, 611, 637
Alw21I	GWGCWC	2 cut(s)	61, 672
Alw44I	GTGCAC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	291
AlwNI	CAGNNNCTG	3 cut(s)	187, 358, 578
AoxI	GGCC	1 cut(s)	159
ApaLI	GTGCAC	1 cut(s)	57
ApeKI	GCWGC	3 cut(s)	352, 355, 358
ApoI	RAATTY	2 cut(s)	495, 526
AsiGI	ACCGGT	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	61
BaeI	ACNNNNGTAYC	4 cut(s)	831, 831, 864, 864
BbsI	GAAGAC	2 cut(s)	395, 635
Bbv12I	GWGCWC	2 cut(s)	61, 672
BbvI	GCAGC	3 cut(s)	342, 345, 364
BccI	CCATC	4 cut(s)	151, 160, 374, 644
BciT130I	CCWGG	3 cut(s)	133, 509, 681
BciVI	GTATCC	3 cut(s)	798, 832, 859
BfaI	CTAG	2 cut(s)	137, 501
BfmI	CTRYAG	3 cut(s)	289, 359, 465
BfuAI	ACCTGC	1 cut(s)	352
BfuI	GTATCC	3 cut(s)	798, 832, 859
BglI	GCCNNNNNGGC	1 cut(s)	167
BglII	AGATCT	2 cut(s)	79, 334
BisI	GCNGC	3 cut(s)	353, 356, 359
BlsI	GCNGC	3 cut(s)	354, 357, 360
BmcAI	AGTACT	1 cut(s)	231
Bme1390I	CCNGG	3 cut(s)	133, 509, 681
BmrFI	CCNGG	3 cut(s)	133, 509, 681
BmsI	GCATC	2 cut(s)	423, 750
BpiI	GAAGAC	2 cut(s)	395, 635
BpmI	CTGGAG	2 cut(s)	530, 702
Bsa29I	ATCGAT	1 cut(s)	456
BsaJI	CCNNGG	4 cut(s)	393, 507, 702, 823
BsaWI	WCCGGW	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	21, 51
Bse118I	RCCGGY	1 cut(s)	13
BseBI	CCWGG	3 cut(s)	133, 509, 681
BseCI	ATCGAT	1 cut(s)	456
BseDI	CCNNGG	4 cut(s)	393, 507, 702, 823
BseGI	GGATG	3 cut(s)	123, 385, 692
BseRI	GAGGAG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	61
BseXI	GCAGC	3 cut(s)	342, 345, 364
BsgI	GTGCAG	1 cut(s)	591
Bsh1236I	CGCG	2 cut(s)	773, 785
BshFI	GGCC	1 cut(s)	161
BshTI	ACCGGT	1 cut(s)	13
BshVI	ATCGAT	1 cut(s)	456
BsiHKAI	GWGCWC	2 cut(s)	61, 672
BsiSI	CCGG	1 cut(s)	14
BslFI	GGGAC	1 cut(s)	560
BsmFI	GGGAC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	50
BsnI	GGCC	1 cut(s)	161
Bsp1286I	GDGCHC	2 cut(s)	61, 672
Bsp1407I	TGTACA	1 cut(s)	747
Bsp143I	GATC	5 cut(s)	79, 283, 334, 545, 724
BspACI	CCGC	3 cut(s)	277, 783, 857
BspANI	GGCC	1 cut(s)	161
BspDI	ATCGAT	1 cut(s)	456
BspFNI	CGCG	2 cut(s)	773, 785
BspMAI	CTGCAG	1 cut(s)	363
BspMI	ACCTGC	1 cut(s)	352
BspPI	GGATC	1 cut(s)	291
BspQI	GCTCTTC	2 cut(s)	119, 240
BsrFI	RCCGGY	1 cut(s)	13
BsrGI	TGTACA	1 cut(s)	747
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	4 cut(s)	393, 507, 702, 823
BssMI	GATC	5 cut(s)	79, 283, 334, 545, 724
BssT1I	CCWWGG	1 cut(s)	702
Bst2UI	CCWGG	3 cut(s)	133, 509, 681
Bst4CI	ACNGT	2 cut(s)	189, 833
Bst6I	CTCTTC	2 cut(s)	119, 240
BstAPI	GCANNNNNTGC	2 cut(s)	56, 358
BstAUI	TGTACA	1 cut(s)	747
BstC8I	GCNNGC	2 cut(s)	438, 783
BstDEI	CTNAG	2 cut(s)	41, 212
BstF5I	GGATG	3 cut(s)	123, 385, 692
BstFNI	CGCG	2 cut(s)	773, 785
BstKTI	GATC	5 cut(s)	82, 286, 337, 548, 727
BstMBI	GATC	5 cut(s)	79, 283, 334, 545, 724
BstMWI	GCNNNNNNNGC	6 cut(s)	56, 167, 358, 364, 446, 569
BstNI	CCWGG	3 cut(s)	133, 509, 681
BstSCI	CCNGG	3 cut(s)	131, 507, 679
BstSFI	CTRYAG	3 cut(s)	289, 359, 465
BstSLI	GKGCMC	1 cut(s)	61
BstUI	CGCG	2 cut(s)	773, 785
BstV1I	GCAGC	3 cut(s)	342, 345, 364
BstV2I	GAAGAC	2 cut(s)	395, 635
BstX2I	RGATCY	3 cut(s)	79, 283, 334
BstYI	RGATCY	3 cut(s)	79, 283, 334
Bsu15I	ATCGAT	1 cut(s)	456
BsuI	GTATCC	3 cut(s)	798, 832, 859
BsuRI	GGCC	1 cut(s)	161
BsuTUI	ATCGAT	1 cut(s)	456
BtsCI	GGATG	3 cut(s)	123, 385, 692
BtsI	GCAGTG	1 cut(s)	672
BtsIMutI	CAGTG	3 cut(s)	61, 152, 672
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	438, 783
CaiI	CAGNNNCTG	3 cut(s)	187, 358, 578
Cfr10I	RCCGGY	1 cut(s)	13
ClaI	ATCGAT	1 cut(s)	456
Csp6I	GTAC	4 cut(s)	230, 298, 504, 748
CspAI	ACCGGT	1 cut(s)	13
CviAII	CATG	3 cut(s)	324, 368, 517
CviQI	GTAC	4 cut(s)	230, 298, 504, 748
DdeI	CTNAG	2 cut(s)	41, 212
DpnI	GATC	5 cut(s)	81, 285, 336, 547, 726
DpnII	GATC	5 cut(s)	79, 283, 334, 545, 724
EaeI	YGGCCR	1 cut(s)	159
Eam1104I	CTCTTC	2 cut(s)	119, 240
EarI	CTCTTC	2 cut(s)	119, 240
Eco130I	CCWWGG	1 cut(s)	702
Eco57I	CTGAAG	2 cut(s)	88, 167
EcoRII	CCWGG	3 cut(s)	131, 507, 679
EcoT14I	CCWWGG	1 cut(s)	702
ErhI	CCWWGG	1 cut(s)	702
FaeI	CATG	3 cut(s)	327, 371, 520
FaiI	YATR	9 cut(s)	66, 306, 325, 369, 413, 518, 596, 752, 758
FalI	AAGNNNNNCTT	4 cut(s)	83, 115, 547, 579
FaqI	GGGAC	1 cut(s)	560
FatI	CATG	3 cut(s)	323, 367, 516
FauI	CCCGC	1 cut(s)	790
Fnu4HI	GCNGC	3 cut(s)	353, 356, 359
FokI	GGATG	3 cut(s)	110, 392, 699
Fsp4HI	GCNGC	3 cut(s)	353, 356, 359
FspBI	CTAG	2 cut(s)	137, 501
GluI	GCNGC	3 cut(s)	353, 356, 359
GsuI	CTGGAG	2 cut(s)	530, 702
HaeIII	GGCC	1 cut(s)	161
HapII	CCGG	1 cut(s)	14
Hin1II	CATG	3 cut(s)	327, 371, 520
HincII	GTYRAC	1 cut(s)	490
HindII	GTYRAC	1 cut(s)	490
HindIII	AAGCTT	2 cut(s)	561, 635
HinfI	GANTC	2 cut(s)	372, 654
HpaII	CCGG	1 cut(s)	14
Hpy166II	GTNNAC	3 cut(s)	59, 490, 748
Hpy188I	TCNGA	6 cut(s)	29, 84, 107, 147, 816, 827
Hpy188III	TCNNGA	3 cut(s)	338, 587, 728
Hpy8I	GTNNAC	3 cut(s)	59, 490, 748
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	3 cut(s)	102, 472, 613
HpyCH4III	ACNGT	2 cut(s)	189, 833
HpyCH4IV	ACGT	2 cut(s)	582, 842
HpyCH4V	TGCA	8 cut(s)	59, 352, 361, 367, 436, 572, 720, 763
HpyF10VI	GCNNNNNNNGC	6 cut(s)	56, 167, 358, 364, 446, 569
HpyF3I	CTNAG	2 cut(s)	41, 212
HpySE526I	ACGT	2 cut(s)	582, 842
Hsp92II	CATG	3 cut(s)	327, 371, 520
Kzo9I	GATC	5 cut(s)	79, 283, 334, 545, 724
LguI	GCTCTTC	2 cut(s)	119, 240
LmnI	GCTCC	2 cut(s)	616, 682
Lsp1109I	GCAGC	3 cut(s)	342, 345, 364
LweI	GCATC	2 cut(s)	423, 750
MaeI	CTAG	2 cut(s)	137, 501
MaeII	ACGT	2 cut(s)	582, 842
MalI	GATC	5 cut(s)	81, 285, 336, 547, 726
MboI	GATC	5 cut(s)	79, 283, 334, 545, 724
MboII	GAAGA	9 cut(s)	89, 94, 106, 236, 257, 397, 400, 442, 640
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	3 cut(s)	79, 283, 334
MhlI	GDGCHC	2 cut(s)	61, 672
MluCI	AATT	3 cut(s)	347, 495, 526
MmeI	TCCRAC	2 cut(s)	580, 794
MnlI	CCTC	9 cut(s)	23, 209, 388, 391, 475, 505, 583, 677, 833
MroXI	GAANNNNTTC	1 cut(s)	98
MseI	TTAA	2 cut(s)	9, 659
MslI	CAYNNNNRTG	1 cut(s)	755
MspA1I	CMGCKG	1 cut(s)	355
MspI	CCGG	1 cut(s)	14
MspR9I	CCNGG	3 cut(s)	133, 509, 681
MunI	CAATTG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	50
MvaI	CCWGG	3 cut(s)	133, 509, 681
MvnI	CGCG	2 cut(s)	773, 785
MwoI	GCNNNNNNNGC	6 cut(s)	56, 167, 358, 364, 446, 569
NdeII	GATC	5 cut(s)	79, 283, 334, 545, 724
NlaIII	CATG	3 cut(s)	327, 371, 520
NmeAIII	GCCGAG	1 cut(s)	187
PaqCI	CACCTGC	1 cut(s)	352
PciSI	GCTCTTC	2 cut(s)	119, 240
PctI	GAATGC	1 cut(s)	50
PdmI	GAANNNNTTC	1 cut(s)	98
PfeI	GAWTC	2 cut(s)	372, 654
PfoI	TCCNGGA	1 cut(s)	679
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	3 cut(s)	354, 357, 360
Psp6I	CCWGG	3 cut(s)	131, 507, 679
PspGI	CCWGG	3 cut(s)	131, 507, 679
PstI	CTGCAG	1 cut(s)	363
PstNI	CAGNNNCTG	3 cut(s)	187, 358, 578
PsuI	RGATCY	3 cut(s)	79, 283, 334
PvuII	CAGCTG	1 cut(s)	355
RsaI	GTAC	4 cut(s)	231, 299, 505, 749
RsaNI	GTAC	4 cut(s)	230, 298, 504, 748
RseI	CAYNNNNRTG	1 cut(s)	755
SapI	GCTCTTC	2 cut(s)	119, 240
SaqAI	TTAA	2 cut(s)	9, 659
SatI	GCNGC	3 cut(s)	353, 356, 359
Sau3AI	GATC	5 cut(s)	79, 283, 334, 545, 724
ScaI	AGTACT	1 cut(s)	231
ScrFI	CCNGG	3 cut(s)	133, 509, 681
SduI	GDGCHC	2 cut(s)	61, 672
SfaNI	GCATC	2 cut(s)	423, 750
SfcI	CTRYAG	3 cut(s)	289, 359, 465
SmiMI	CAYNNNNRTG	1 cut(s)	755
Sse9I	AATT	3 cut(s)	347, 495, 526
SsiI	CCGC	3 cut(s)	277, 783, 857
SspMI	CTAG	2 cut(s)	137, 501
StyD4I	CCNGG	3 cut(s)	131, 507, 679
StyI	CCWWGG	1 cut(s)	702
TaaI	ACNGT	2 cut(s)	189, 833
TaiI	ACGT	2 cut(s)	585, 845
TaqI	TCGA	2 cut(s)	422, 456
TaqII	GACCGA	3 cut(s)	162, 407, 558
TasI	AATT	3 cut(s)	347, 495, 526
TatI	WGTACW	3 cut(s)	229, 297, 747
TfiI	GAWTC	2 cut(s)	372, 654
Tru1I	TTAA	2 cut(s)	9, 659
Tru9I	TTAA	2 cut(s)	9, 659
TscAI	CASTG	3 cut(s)	61, 159, 679
TseI	GCWGC	3 cut(s)	352, 355, 358
TspDTI	ATGAA	1 cut(s)	533
TspGWI	ACGGA	1 cut(s)	780
TspRI	CASTG	3 cut(s)	61, 159, 679
VneI	GTGCAC	1 cut(s)	57
XapI	RAATTY	2 cut(s)	495, 526
XmnI	GAANNNNTTC	1 cut(s)	98
XspI	CTAG	2 cut(s)	137, 501
ZrmI	AGTACT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.