Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Reverse (-)

74908016 .. 74908775

Gene Structure 760 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG568700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTCCAAATTTCAGAGCTTGTTTAGATTGGTACTGTTCATCACTCTTTCTGTTCAGGCCATGGGCCGTGATTGGCAACATGCAAGCGCAACCTTTTACGGCGACATGCAGGGAGGAGAAACTATGCAAGGGGCTTGTGGATATGGTAATCTCTTCCAACAAGGTTATGGTTTGGAGACGGCAGCTCTAAGCACGCAACTATTTAACGACGGACATTCTTGTGGTGCTTGTTTTGAGATCATGTGTGTCAACGATCCACAGTGGTGCAAACCTAACGCAGTTATCAAAGTCACTGCAACAAATTTCTGTCCACCGAATTGGGTTCCAGCTCCTGATCATTGGTGCAACCCACCTCGCAAACACTTTGACTTGTCCATGGCTATGTTCACAAAACTTGCAGAATACAAAGCCGGTATCATTCCAGTTATATATCGCCGAACCCCATGTGACAGAAATGGAGGGATTAAGTTTGAGGTTAAGGGAAACCCCTACTGGACTTCTGTTGTGGTTTATAATGTTGCTGGTGCTGGTCTTGTTAACCACGTCGCAATTAAGGGTCCAACTCCGGTTGGATTTCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

193

Amino Acids

21.29

Weight (kDa)

8.41

Isoelectric Point (pI)

20.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	28 - 117	4.8e-08	EXPB1-like domain 1
DPBB_1	PF03330	60 - 144	2.5e-22	Lytic transglycolase
Expansin_C	PF01357	155 - 186	9.5e-06	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AclWI	GGATC	1 cut(s)	248
AcsI	RAATTY	2 cut(s)	8, 301
AfaI	GTAC	1 cut(s)	33
AgsI	TTSAA	1 cut(s)	578
AjiI	CACGTC	1 cut(s)	544
AleI	CACNNNNGTG	1 cut(s)	262
AluBI	AGCT	3 cut(s)	18, 185, 329
AluI	AGCT	3 cut(s)	18, 185, 329
Alw26I	GTCTC	1 cut(s)	170
AlwI	GGATC	1 cut(s)	248
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	2 cut(s)	57, 64
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	8, 301
AspLEI	GCGC	1 cut(s)	89
AspS9I	GGNCC	2 cut(s)	64, 557
AvaII	GGWCC	1 cut(s)	557
BbvI	GCAGC	1 cut(s)	194
BceAI	ACGGC	3 cut(s)	51, 115, 195
BclI	TGATCA	1 cut(s)	334
BcoDI	GTCTC	1 cut(s)	170
BisI	GCNGC	1 cut(s)	183
BlsI	GCNGC	1 cut(s)	184
Bme18I	GGWCC	1 cut(s)	557
BmgBI	CACGTC	1 cut(s)	544
BmgT120I	GGNCC	2 cut(s)	64, 557
BmiI	GGNNCC	2 cut(s)	324, 558
BsaJI	CCNNGG	2 cut(s)	60, 375
BsaWI	WCCGGW	1 cut(s)	565
Bse118I	RCCGGY	1 cut(s)	410
Bse1I	ACTGG	2 cut(s)	422, 497
BseDI	CCNNGG	2 cut(s)	60, 375
BseNI	ACTGG	2 cut(s)	422, 497
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	194
BshFI	GGCC	2 cut(s)	59, 66
BsiSI	CCGG	2 cut(s)	411, 566
BsmAI	GTCTC	1 cut(s)	170
BsmBI	CGTCTC	1 cut(s)	170
BsnI	GGCC	2 cut(s)	59, 66
Bsp143I	GATC	3 cut(s)	237, 253, 334
Bsp19I	CCATGG	2 cut(s)	60, 375
BspANI	GGCC	2 cut(s)	59, 66
BspLI	GGNNCC	2 cut(s)	324, 558
BspPI	GGATC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	410
BsrI	ACTGG	2 cut(s)	422, 497
BssAI	RCCGGY	1 cut(s)	410
BssECI	CCNNGG	2 cut(s)	60, 375
BssMI	GATC	3 cut(s)	237, 253, 334
BssT1I	CCWWGG	2 cut(s)	60, 375
Bst4CI	ACNGT	2 cut(s)	36, 261
Bst6I	CTCTTC	1 cut(s)	158
BstC8I	GCNNGC	2 cut(s)	85, 194
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	2 cut(s)	60, 375
BstHHI	GCGC	1 cut(s)	89
BstKTI	GATC	3 cut(s)	240, 256, 337
BstMAI	GTCTC	1 cut(s)	170
BstMBI	GATC	3 cut(s)	237, 253, 334
BstNSI	RCATGY	2 cut(s)	83, 109
BstV1I	GCAGC	1 cut(s)	194
BstXI	CCANNNNNNTGG	1 cut(s)	318
BsuRI	GGCC	2 cut(s)	59, 66
BtgI	CCRYGG	2 cut(s)	60, 375
BtrI	CACGTC	1 cut(s)	544
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	266, 291
Cac8I	GCNNGC	2 cut(s)	85, 194
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	89
Cfr10I	RCCGGY	1 cut(s)	410
Cfr13I	GGNCC	2 cut(s)	64, 557
Csp6I	GTAC	1 cut(s)	32
CviAII	CATG	6 cut(s)	61, 80, 106, 241, 376, 444
CviJI	RGCY	8 cut(s)	18, 59, 66, 134, 185, 329, 380, 410
CviKI_1	RGCY	8 cut(s)	18, 59, 66, 134, 185, 329, 380, 410
CviQI	GTAC	1 cut(s)	32
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	3 cut(s)	239, 255, 336
DpnII	GATC	3 cut(s)	237, 253, 334
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	60, 375
Eco47I	GGWCC	1 cut(s)	557
EcoT14I	CCWWGG	2 cut(s)	60, 375
ErhI	CCWWGG	2 cut(s)	60, 375
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	6 cut(s)	64, 83, 109, 244, 379, 447
FatI	CATG	6 cut(s)	60, 79, 105, 240, 375, 443
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	183
GlaI	GCGC	1 cut(s)	88
GluI	GCNGC	1 cut(s)	183
HaeIII	GGCC	2 cut(s)	59, 66
HapII	CCGG	2 cut(s)	411, 566
HhaI	GCGC	1 cut(s)	89
Hin1II	CATG	6 cut(s)	64, 83, 109, 244, 379, 447
Hin6I	GCGC	1 cut(s)	87
HinP1I	GCGC	1 cut(s)	87
HincII	GTYRAC	2 cut(s)	250, 538
HindII	GTYRAC	2 cut(s)	250, 538
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	2 cut(s)	411, 566
Hpy166II	GTNNAC	4 cut(s)	250, 311, 387, 538
Hpy188I	TCNGA	1 cut(s)	15
Hpy188III	TCNNGA	1 cut(s)	332
Hpy8I	GTNNAC	4 cut(s)	250, 311, 387, 538
Hpy99I	CGWCG	2 cut(s)	212, 548
HpyCH4III	ACNGT	2 cut(s)	36, 261
HpyCH4IV	ACGT	1 cut(s)	543
HpyCH4V	TGCA	7 cut(s)	83, 109, 127, 267, 296, 345, 398
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	1 cut(s)	543
Hsp92II	CATG	6 cut(s)	64, 83, 109, 244, 379, 447
HspAI	GCGC	1 cut(s)	87
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	3 cut(s)	237, 253, 334
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	9 cut(s)	41, 95, 339, 345, 424, 435, 478, 507, 513
Lsp1109I	GCAGC	1 cut(s)	194
MaeII	ACGT	1 cut(s)	543
MaeIII	GTNAC	2 cut(s)	289, 446
MalI	GATC	3 cut(s)	239, 255, 336
MboI	GATC	3 cut(s)	237, 253, 334
MboII	GAAGA	1 cut(s)	145
MluCI	AATT	4 cut(s)	8, 301, 316, 549
MmeI	TCCRAC	2 cut(s)	181, 550
MnlI	CCTC	4 cut(s)	107, 363, 452, 466
MseI	TTAA	5 cut(s)	204, 465, 477, 537, 552
MslI	CAYNNNNRTG	3 cut(s)	219, 262, 380
MspI	CCGG	2 cut(s)	411, 566
NcoI	CCATGG	2 cut(s)	60, 375
NdeII	GATC	3 cut(s)	237, 253, 334
NlaIII	CATG	6 cut(s)	64, 83, 109, 244, 379, 447
NlaIV	GGNNCC	2 cut(s)	324, 558
NmuCI	GTSAC	2 cut(s)	289, 446
NspI	RCATGY	2 cut(s)	83, 109
OliI	CACNNNNGTG	1 cut(s)	262
PkrI	GCNGC	1 cut(s)	184
PsiI	TTATAA	1 cut(s)	513
PspN4I	GGNNCC	2 cut(s)	324, 558
PspPI	GGNCC	2 cut(s)	64, 557
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	1 cut(s)	33
RsaNI	GTAC	1 cut(s)	32
RseI	CAYNNNNRTG	3 cut(s)	219, 262, 380
SaqAI	TTAA	5 cut(s)	204, 465, 477, 537, 552
SatI	GCNGC	1 cut(s)	183
Sau3AI	GATC	3 cut(s)	237, 253, 334
Sau96I	GGNCC	2 cut(s)	64, 557
SetI	ASST	9 cut(s)	20, 95, 166, 187, 274, 331, 355, 477, 546
SinI	GGWCC	1 cut(s)	557
SmiMI	CAYNNNNRTG	3 cut(s)	219, 262, 380
Sse9I	AATT	4 cut(s)	8, 301, 316, 549
StyI	CCWWGG	2 cut(s)	60, 375
TaaI	ACNGT	2 cut(s)	36, 261
TaiI	ACGT	1 cut(s)	546
TasI	AATT	4 cut(s)	8, 301, 316, 549
Tru1I	TTAA	5 cut(s)	204, 465, 477, 537, 552
Tru9I	TTAA	5 cut(s)	204, 465, 477, 537, 552
TscAI	CASTG	2 cut(s)	266, 298
TseFI	GTSAC	2 cut(s)	289, 446
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	2 cut(s)	289, 446
TspDTI	ATGAA	1 cut(s)	28
TspGWI	ACGGA	1 cut(s)	225
TspRI	CASTG	2 cut(s)	266, 298
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	2 cut(s)	8, 301
XceI	RCATGY	2 cut(s)	83, 109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.