Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Reverse (-)

35750648 .. 35751715

Gene Structure 1068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47033.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCTAAGTTCCAAAACTACTTATTGCTCATCATCAGCACTCTTTTGGTGCATGTCATTGTCACTAATGCTGCTTGGGAGGATGGGAGCGCAACGTTTTACGGTGACATGACCGGAGCCGAAACCATGCAGGGGGCTTGTGGTTATGGTGATCTCTTCCAACAAGGCTATGGCCTCGAGACAGCAGCTCTAAGCACAGCACTGTTCAACAATGGACAAACTTGCGGTGCTTGTTTTCAGATCATGTGTGTCAATGATCCACAATGGTGCATACCTCATGCTGGTACCATCAGAATTACAGCAACAAATTTCTGTCCTCCAAATTACGATCCACATTTTTATCCCTGGTGCAACCCCCCAAGAAAACACTTCGACTTGTCCATGCCTATGTTTGCGAAAATCGCTATCACCAAAGCTGGGATAATTCCTGTAAAGTTTCGTAGAGTCCATTGTGCTAAAAGAGGAGGGATTAGGTTTGAGCTAAAAGGAAACCCTTACTGGATTACTGCAACTATGTTGAATGTTGGTGGTGCTGGTGATGTTACAGCGCTGCGAATCAAAGGGTCTAAATCCGATTGGGTTCAAATGTCACGCAACTGGGGACAACTATGGCAGACTGCAGCGAACTTAGTCGGACAAAGCTTATCATTCCAAGTTACTACTAGTGATGGGAAGACGGTTCAGCTTGATAATGTTGCAACAGGAAATTGGCAATTTGGGCAAACCTATGAAGGCAAAGGAAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

250

Amino Acids

27.43

Weight (kDa)

8.61

Isoelectric Point (pI)

17.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	30 - 152	2.2e-07	EXPB1-like domain 1
DPBB_1	PF03330	61 - 146	2.4e-21	Lytic transglycolase
Expansin_C	PF01357	157 - 233	7.2e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	284
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	1 cut(s)	225
AclI	AACGTT	1 cut(s)	95
AclWI	GGATC	2 cut(s)	251, 323
AcsI	RAATTY	1 cut(s)	307
AfaI	GTAC	1 cut(s)	286
AfeI	AGCGCT	1 cut(s)	549
AfiI	CCNNNNNNNGG	3 cut(s)	132, 281, 417
AgsI	TTSAA	3 cut(s)	208, 520, 584
AhlI	ACTAGT	1 cut(s)	662
AjnI	CCWGG	1 cut(s)	344
AleI	CACNNNNGTG	1 cut(s)	265
AluBI	AGCT	5 cut(s)	188, 416, 481, 642, 685
AluI	AGCT	5 cut(s)	188, 416, 481, 642, 685
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	2 cut(s)	251, 323
Ama87I	CYCGRG	1 cut(s)	176
Aor51HI	AGCGCT	1 cut(s)	549
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	4 cut(s)	71, 185, 550, 620
ApoI	RAATTY	1 cut(s)	307
Asp718I	GGTACC	1 cut(s)	284
AspLEI	GCGC	2 cut(s)	92, 550
AsuHPI	GGTGA	4 cut(s)	116, 161, 400, 548
AvaI	CYCGRG	1 cut(s)	176
BanI	GGYRCC	1 cut(s)	284
BbsI	GAAGAC	1 cut(s)	680
BbvI	GCAGC	4 cut(s)	58, 197, 537, 632
BccI	CCATC	3 cut(s)	77, 296, 662
BciT130I	CCWGG	1 cut(s)	346
BcoDI	GTCTC	1 cut(s)	173
BcuI	ACTAGT	1 cut(s)	662
BfaI	CTAG	1 cut(s)	663
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	551
BisI	GCNGC	4 cut(s)	72, 186, 551, 621
BlsI	GCNGC	4 cut(s)	73, 187, 552, 622
Bme1390I	CCNGG	1 cut(s)	346
BmeT110I	CYCGRG	1 cut(s)	176
BmiI	GGNNCC	2 cut(s)	118, 286
BmrFI	CCNGG	1 cut(s)	346
BmrI	ACTGGG	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	607
BpiI	GAAGAC	1 cut(s)	680
BsaJI	CCNNGG	1 cut(s)	344
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 281, 417
Bse1I	ACTGG	2 cut(s)	503, 602
BseBI	CCWGG	1 cut(s)	346
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	1 cut(s)	88
BseLI	CCNNNNNNNGG	3 cut(s)	132, 281, 417
BseNI	ACTGG	2 cut(s)	503, 602
BseRI	GAGGAG	1 cut(s)	477
BseXI	GCAGC	4 cut(s)	58, 197, 537, 632
BseYI	CCCAGC	1 cut(s)	416
BshFI	GGCC	1 cut(s)	174
BshNI	GGYRCC	1 cut(s)	284
BsiHKCI	CYCGRG	1 cut(s)	176
BsiSI	CCGG	1 cut(s)	114
BslFI	GGGAC	1 cut(s)	615
BslI	CCNNNNNNNGG	3 cut(s)	132, 281, 417
BsmAI	GTCTC	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	615
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	176
Bsp143I	GATC	4 cut(s)	151, 240, 256, 328
BspACI	CCGC	1 cut(s)	225
BspANI	GGCC	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	118, 286
BspMAI	CTGCAG	1 cut(s)	622
BspPI	GGATC	2 cut(s)	251, 323
BspT107I	GGYRCC	1 cut(s)	284
BsrI	ACTGG	2 cut(s)	503, 602
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	4 cut(s)	151, 240, 256, 328
Bst2UI	CCWGG	1 cut(s)	346
Bst4CI	ACNGT	3 cut(s)	104, 204, 679
Bst6I	CTCTTC	1 cut(s)	161
BstDEI	CTNAG	3 cut(s)	6, 191, 628
BstF5I	GGATG	1 cut(s)	88
BstH2I	RGCGCY	1 cut(s)	551
BstHHI	GCGC	2 cut(s)	92, 550
BstKTI	GATC	4 cut(s)	154, 243, 259, 331
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	4 cut(s)	151, 240, 256, 328
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 718
BstNI	CCWGG	1 cut(s)	346
BstNSI	RCATGY	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	4 cut(s)	58, 197, 537, 632
BstV2I	GAAGAC	1 cut(s)	680
BsuRI	GGCC	1 cut(s)	174
BtsCI	GGATG	1 cut(s)	88
BtsIMutI	CAGTG	1 cut(s)	200
CfoI	GCGC	2 cut(s)	92, 550
Csp6I	GTAC	1 cut(s)	285
CviAII	CATG	6 cut(s)	53, 109, 127, 244, 278, 382
CviQI	GTAC	1 cut(s)	285
DdeI	CTNAG	3 cut(s)	6, 191, 628
DpnI	GATC	4 cut(s)	153, 242, 258, 330
DpnII	GATC	4 cut(s)	151, 240, 256, 328
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco47III	AGCGCT	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	344
FaeI	CATG	6 cut(s)	56, 112, 130, 247, 281, 385
FaqI	GGGAC	1 cut(s)	615
FatI	CATG	6 cut(s)	52, 108, 126, 243, 277, 381
Fnu4HI	GCNGC	4 cut(s)	72, 186, 551, 621
FokI	GGATG	1 cut(s)	95
Fsp4HI	GCNGC	4 cut(s)	72, 186, 551, 621
FspBI	CTAG	1 cut(s)	663
GlaI	GCGC	2 cut(s)	91, 549
GluI	GCNGC	4 cut(s)	72, 186, 551, 621
GsaI	CCCAGC	1 cut(s)	420
HaeII	RGCGCY	1 cut(s)	551
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	114
HhaI	GCGC	2 cut(s)	92, 550
Hin1II	CATG	6 cut(s)	56, 112, 130, 247, 281, 385
Hin6I	GCGC	2 cut(s)	90, 548
HinP1I	GCGC	2 cut(s)	90, 548
HindIII	AAGCTT	1 cut(s)	640
HinfI	GANTC	2 cut(s)	444, 555
HpaII	CCGG	1 cut(s)	114
HphI	GGTGA	4 cut(s)	116, 161, 400, 548
Hpy188I	TCNGA	4 cut(s)	240, 293, 574, 635
Hpy188III	TCNNGA	1 cut(s)	178
HpyAV	CCTTC	1 cut(s)	725
HpyCH4III	ACNGT	3 cut(s)	104, 204, 679
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	7 cut(s)	52, 130, 270, 351, 509, 620, 698
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 718
HpyF3I	CTNAG	3 cut(s)	6, 191, 628
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	6 cut(s)	56, 112, 130, 247, 281, 385
HspAI	GCGC	2 cut(s)	90, 548
KpnI	GGTACC	1 cut(s)	288
Kzo9I	GATC	4 cut(s)	151, 240, 256, 328
LmnI	GCTCC	2 cut(s)	87, 116
Lsp1109I	GCAGC	4 cut(s)	58, 197, 537, 632
MaeI	CTAG	1 cut(s)	663
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	5 cut(s)	61, 104, 541, 588, 655
MalI	GATC	4 cut(s)	153, 242, 258, 330
MboI	GATC	4 cut(s)	151, 240, 256, 328
MboII	GAAGA	2 cut(s)	148, 685
MluCI	AATT	6 cut(s)	294, 307, 322, 423, 706, 713
MlyI	GAGTC	1 cut(s)	453
MmeI	TCCRAC	2 cut(s)	184, 613
MnlI	CCTC	6 cut(s)	73, 185, 285, 327, 455, 458
MslI	CAYNNNNRTG	2 cut(s)	265, 386
MspI	CCGG	1 cut(s)	114
MspR9I	CCNGG	1 cut(s)	346
MvaI	CCWGG	1 cut(s)	346
MwoI	GCNNNNNNNGC	2 cut(s)	401, 718
NdeII	GATC	4 cut(s)	151, 240, 256, 328
NlaIII	CATG	6 cut(s)	56, 112, 130, 247, 281, 385
NlaIV	GGNNCC	2 cut(s)	118, 286
NmuCI	GTSAC	3 cut(s)	61, 104, 588
NspI	RCATGY	1 cut(s)	56
OliI	CACNNNNGTG	1 cut(s)	265
PaeR7I	CTCGAG	1 cut(s)	176
PfeI	GAWTC	1 cut(s)	555
PkrI	GCNGC	4 cut(s)	73, 187, 552, 622
PleI	GAGTC	1 cut(s)	452
PpsI	GAGTC	1 cut(s)	452
Psp1406I	AACGTT	1 cut(s)	95
Psp6I	CCWGG	1 cut(s)	344
PspFI	CCCAGC	1 cut(s)	416
PspGI	CCWGG	1 cut(s)	344
PspN4I	GGNNCC	2 cut(s)	118, 286
PstI	CTGCAG	1 cut(s)	622
RsaI	GTAC	1 cut(s)	286
RsaNI	GTAC	1 cut(s)	285
RseI	CAYNNNNRTG	2 cut(s)	265, 386
SatI	GCNGC	4 cut(s)	72, 186, 551, 621
Sau3AI	GATC	4 cut(s)	151, 240, 256, 328
SchI	GAGTC	1 cut(s)	453
ScrFI	CCNGG	1 cut(s)	346
SetI	ASST	9 cut(s)	98, 190, 277, 418, 476, 483, 644, 687, 728
SfcI	CTRYAG	1 cut(s)	618
Sfr274I	CTCGAG	1 cut(s)	176
SlaI	CTCGAG	1 cut(s)	176
SmiMI	CAYNNNNRTG	2 cut(s)	265, 386
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
SpeI	ACTAGT	1 cut(s)	662
Sse9I	AATT	6 cut(s)	294, 307, 322, 423, 706, 713
SsiI	CCGC	1 cut(s)	225
SspMI	CTAG	1 cut(s)	663
StyD4I	CCNGG	1 cut(s)	344
TaaI	ACNGT	3 cut(s)	104, 204, 679
TaiI	ACGT	1 cut(s)	98
TaqI	TCGA	2 cut(s)	177, 372
TasI	AATT	6 cut(s)	294, 307, 322, 423, 706, 713
TfiI	GAWTC	1 cut(s)	555
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	3 cut(s)	61, 104, 588
TseI	GCWGC	4 cut(s)	71, 185, 550, 620
Tsp45I	GTSAC	3 cut(s)	61, 104, 588
TspDTI	ATGAA	1 cut(s)	744
TspRI	CASTG	1 cut(s)	207
XapI	RAATTY	1 cut(s)	307
XceI	RCATGY	1 cut(s)	56
XcmI	CCANNNNNNNNNTGG	1 cut(s)	167
XhoI	CTCGAG	1 cut(s)	176
XspI	CTAG	1 cut(s)	663

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.