Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Forward (+)

29410383 .. 29411564

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g34000.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTATGTTGAAGTATTTGCTTGCAGCAGCGTCGCTGTTCATCTCTCTTTTCGTTCAGGGCATGCGCGGTGATAACATGACTACTTGGTTTACTGGTGCAACTGCGTCGTTCTACGGCGACATGCGTGGCAGAGGAACCAATAAGGGTGCCTGTGGATACGGTGATCTGAAAAAACAAGGCTATGGCTTGGAGACGACGGCTCTCAGCACAGCACTCTTTAACGACGGCCTTGCTTGTGGCGCTTGTTACGCCCTCATATGTGTCGATGATCCAAAAGGGTGCTTACCTAATGCTGGTGCTGTCTTAGTTACAGCAACCAATTTTTGCCCATCAAATTATACCAAGCCTTCAGGGGGCACCAACAACTGGTGCAACCCACCATCGAAACACTTCAGGTTGTCCCTGCCTGCGTTCACAAAAATCACAGATGAAAATACTCCTATGGTACCAGTTATATATCGCAGAGTCCCGTGTGGTAAAGCTGGAGGGGTTAAGTTCCAAATAGTGAAGGGGGGCTCTAGTGTGATGCGTGTGTTATTGTACAATGTGGCCGGAGCTGGTAATGTTTCTGATGTCAAAATTAAGGGTTCTACCAGTTCTGGTTGGCTTCATATGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

208

Amino Acids

21.89

Weight (kDa)

9.32

Isoelectric Point (pI)

18.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	35 - 125	1.8e-06	EXPB1-like domain 1
DPBB_1	PF03330	66 - 153	9.2e-14	Lytic transglycolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	448
AccB1I	GGYRCC	3 cut(s)	149, 359, 448
AccB7I	CCANNNNNTGG	1 cut(s)	369
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	266
AcoI	YGGCCR	1 cut(s)	552
AcuI	CTGAAG	2 cut(s)	336, 379
AfaI	GTAC	2 cut(s)	450, 545
AfiI	CCNNNNNNNGG	3 cut(s)	296, 356, 369
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	2 cut(s)	485, 560
AluI	AGCT	2 cut(s)	485, 560
Alw26I	GTCTC	1 cut(s)	188
AlwI	GGATC	1 cut(s)	266
AoxI	GGCC	2 cut(s)	229, 552
ApeKI	GCWGC	2 cut(s)	26, 29
Asp700I	GAANNNNTTC	1 cut(s)	392
Asp718I	GGTACC	1 cut(s)	448
AspLEI	GCGC	2 cut(s)	69, 245
AsuHPI	GGTGA	2 cut(s)	83, 176
BaeGI	GKGCMC	1 cut(s)	362
BanI	GGYRCC	3 cut(s)	149, 359, 448
BanII	GRGCYC	1 cut(s)	521
BbvI	GCAGC	2 cut(s)	38, 41
BccI	CCATC	2 cut(s)	340, 391
BceAI	ACGGC	3 cut(s)	133, 216, 244
BcgI	CGANNNNNNTGC	6 cut(s)	15, 49, 90, 124, 215, 249
BciVI	GTATCC	1 cut(s)	152
BcoDI	GTCTC	1 cut(s)	188
BfaI	CTAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	246
BfuI	GTATCC	1 cut(s)	152
BisI	GCNGC	2 cut(s)	27, 30
BlsI	GCNGC	2 cut(s)	28, 31
BmiI	GGNNCC	4 cut(s)	139, 151, 361, 450
BmsI	GCATC	1 cut(s)	519
BpmI	CTGGAG	1 cut(s)	507
Bsc4I	CCNNNNNNNGG	3 cut(s)	296, 356, 369
Bse1I	ACTGG	4 cut(s)	100, 374, 452, 597
BseLI	CCNNNNNNNGG	3 cut(s)	296, 356, 369
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	4 cut(s)	100, 374, 452, 597
BseSI	GKGCMC	1 cut(s)	362
BseXI	GCAGC	2 cut(s)	38, 41
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	2 cut(s)	231, 554
BshNI	GGYRCC	3 cut(s)	149, 359, 448
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	2 cut(s)	388, 455
BslI	CCNNNNNNNGG	3 cut(s)	296, 356, 369
BsmAI	GTCTC	1 cut(s)	188
BsmBI	CGTCTC	1 cut(s)	188
BsmFI	GGGAC	2 cut(s)	388, 455
BsnI	GGCC	2 cut(s)	231, 554
Bsp1286I	GDGCHC	2 cut(s)	362, 521
Bsp1407I	TGTACA	1 cut(s)	543
Bsp143I	GATC	2 cut(s)	166, 271
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	2 cut(s)	231, 554
BspCNI	CTCAG	1 cut(s)	219
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	139, 151, 361, 450
BspPI	GGATC	1 cut(s)	266
BspT107I	GGYRCC	3 cut(s)	149, 359, 448
BsrGI	TGTACA	1 cut(s)	543
BsrI	ACTGG	4 cut(s)	100, 374, 452, 597
BssMI	GATC	2 cut(s)	166, 271
Bst4CI	ACNGT	1 cut(s)	164
BstAUI	TGTACA	1 cut(s)	543
BstC8I	GCNNGC	3 cut(s)	24, 65, 411
BstDEI	CTNAG	2 cut(s)	206, 307
BstFNI	CGCG	1 cut(s)	69
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	2 cut(s)	69, 245
BstKTI	GATC	2 cut(s)	169, 274
BstMAI	GTCTC	1 cut(s)	188
BstMBI	GATC	2 cut(s)	166, 271
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 251
BstNSI	RCATGY	2 cut(s)	67, 127
BstSLI	GKGCMC	1 cut(s)	362
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	2 cut(s)	38, 41
BsuI	GTATCC	1 cut(s)	152
BsuRI	GGCC	2 cut(s)	231, 554
Cac8I	GCNNGC	3 cut(s)	24, 65, 411
CfoI	GCGC	2 cut(s)	69, 245
CseI	GACGC	2 cut(s)	21, 96
Csp6I	GTAC	2 cut(s)	449, 544
CviAII	CATG	4 cut(s)	64, 79, 124, 621
CviQI	GTAC	2 cut(s)	449, 544
DdeI	CTNAG	2 cut(s)	206, 307
DpnI	GATC	2 cut(s)	168, 273
DpnII	GATC	2 cut(s)	166, 271
EaeI	YGGCCR	1 cut(s)	552
Eco24I	GRGCYC	1 cut(s)	521
Eco57I	CTGAAG	2 cut(s)	336, 379
EcoT38I	GRGCYC	1 cut(s)	521
Esp3I	CGTCTC	1 cut(s)	188
FaeI	CATG	4 cut(s)	67, 82, 127, 624
FaqI	GGGAC	2 cut(s)	388, 455
FatI	CATG	4 cut(s)	63, 78, 123, 620
FauNDI	CATATG	2 cut(s)	260, 615
Fnu4HI	GCNGC	2 cut(s)	27, 30
FriOI	GRGCYC	1 cut(s)	521
Fsp4HI	GCNGC	2 cut(s)	27, 30
FspBI	CTAG	1 cut(s)	522
GlaI	GCGC	2 cut(s)	68, 244
GluI	GCNGC	2 cut(s)	27, 30
GsuI	CTGGAG	1 cut(s)	507
HaeII	RGCGCY	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	231, 554
HapII	CCGG	1 cut(s)	555
HgaI	GACGC	2 cut(s)	21, 96
HhaI	GCGC	2 cut(s)	69, 245
Hin1II	CATG	4 cut(s)	67, 82, 127, 624
Hin6I	GCGC	2 cut(s)	67, 243
HinP1I	GCGC	2 cut(s)	67, 243
HinfI	GANTC	1 cut(s)	468
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	2 cut(s)	83, 176
Hpy166II	GTNNAC	2 cut(s)	93, 417
Hpy188I	TCNGA	2 cut(s)	171, 574
Hpy8I	GTNNAC	2 cut(s)	93, 417
Hpy99I	CGWCG	4 cut(s)	37, 112, 202, 230
HpyAV	CCTTC	2 cut(s)	360, 505
HpyCH4III	ACNGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	26, 101, 375
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 251
HpyF3I	CTNAG	2 cut(s)	206, 307
Hsp92II	CATG	4 cut(s)	67, 82, 127, 624
HspAI	GCGC	2 cut(s)	67, 243
KpnI	GGTACC	1 cut(s)	452
Kzo9I	GATC	2 cut(s)	166, 271
LmnI	GCTCC	1 cut(s)	557
Lsp1109I	GCAGC	2 cut(s)	38, 41
LweI	GCATC	1 cut(s)	519
MaeI	CTAG	1 cut(s)	522
MaeIII	GTNAC	2 cut(s)	248, 310
MalI	GATC	2 cut(s)	168, 273
MboI	GATC	2 cut(s)	166, 271
MhlI	GDGCHC	2 cut(s)	362, 521
MluCI	AATT	3 cut(s)	322, 337, 582
MlyI	GAGTC	1 cut(s)	477
MnlI	CCTC	3 cut(s)	128, 266, 482
MroXI	GAANNNNTTC	1 cut(s)	392
MseI	TTAA	3 cut(s)	222, 495, 585
MspI	CCGG	1 cut(s)	555
MvnI	CGCG	1 cut(s)	69
MwoI	GCNNNNNNNGC	2 cut(s)	242, 251
NdeI	CATATG	2 cut(s)	260, 615
NdeII	GATC	2 cut(s)	166, 271
NlaIII	CATG	4 cut(s)	67, 82, 127, 624
NlaIV	GGNNCC	4 cut(s)	139, 151, 361, 450
NspI	RCATGY	2 cut(s)	67, 127
PaeI	GCATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	392
PflMI	CCANNNNNTGG	1 cut(s)	369
PkrI	GCNGC	2 cut(s)	28, 31
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PspN4I	GGNNCC	4 cut(s)	139, 151, 361, 450
RsaI	GTAC	2 cut(s)	450, 545
RsaNI	GTAC	2 cut(s)	449, 544
SaqAI	TTAA	3 cut(s)	222, 495, 585
SatI	GCNGC	2 cut(s)	27, 30
Sau3AI	GATC	2 cut(s)	166, 271
SchI	GAGTC	1 cut(s)	477
SduI	GDGCHC	2 cut(s)	362, 521
SetI	ASST	4 cut(s)	292, 401, 487, 562
SfaNI	GCATC	1 cut(s)	519
SphI	GCATGC	1 cut(s)	67
Sse9I	AATT	3 cut(s)	322, 337, 582
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	522
TaaI	ACNGT	1 cut(s)	164
TaqI	TCGA	2 cut(s)	267, 386
TasI	AATT	3 cut(s)	322, 337, 582
TatI	WGTACW	1 cut(s)	543
Tru1I	TTAA	3 cut(s)	222, 495, 585
Tru9I	TTAA	3 cut(s)	222, 495, 585
TseI	GCWGC	2 cut(s)	26, 29
TspDTI	ATGAA	3 cut(s)	31, 447, 602
Van91I	CCANNNNNTGG	1 cut(s)	369
XceI	RCATGY	2 cut(s)	67, 127
XmnI	GAANNNNTTC	1 cut(s)	392
XspI	CTAG	1 cut(s)	522

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.