Prupe.2G121800_v2.0.a1

expansin-A23-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0001146
Physical Location & Seq
Forward (+)
17896151 .. 17897099
949 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G121800.1

Sequence Viewer

Length: 783 bp
ATGGCTAAGTTTCAGAACTTGTTTACATGGGCAGTGTTCATGATCACTCTTTTGGCTCAAGCCATGGGCAAGAAAATCACCGTTGGTGCAAACGCCGCACACAATGACTGGGACAATGCACACGCAACGTTTTATGGTGACATGGGTGGAGCAGAAACCATGCAGGGGGCTTGTGGATATGGTGATCTCTTCCAACAAGGCTATGGCTTGGAGACAACAGCTCTAAGCACGGCACTATTCAACAATGGGCTTACTTGTGGTGCTTGCTTTGAGGTCATGTGTGTAGATGATCCACAATGGTGCATACCAAATTCTGGCACAATCAAAATCACAGCAACCAATTTCTGCCCACCAAATTGGGATCCAGCTCCTGACCATTGGTGCAATCCTCCAATGAAACACTTTGACTTGTCCATGGCTATGTTCACAAAGCTTGCACAGGCCAAAGCTGGCATAATTCCTATCAAATATAGAAGAGTACCTTGTTCTAAAAAAGGAGGGGTTAAGTTTGAGCTCAAAGGAAACCCGTTTTGGCTTGCTGTTTTAGTGTACAATGTTGGTCGTGCTGGGGATGTGACAAGTGTCAGAATCAGAGGGTCTAAGACTGATTGGCTTCAAATGTCACGAAATTGGGGCCAAATTTGGCAGATTGGAAGCAACATGGTAGGGCAAAGCTTGTCGTTTCAAGTCACTACAAGTGATGGGAGAACACGTAAGTTTGATAATGTTGCTCCTGGAGATTGGCAATTTGGCCAAACCTATGAGGGGAAGAATAATTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

261

Amino Acids

28.74

Weight (kDa)

8.59

Isoelectric Point (pI)

15.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 314
AciI CCGC 1 cut(s) 96
AclI AACGTT 1 cut(s) 128
AclWI GGATC 3 cut(s) 284, 356, 369
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 2 cut(s) 310, 639
AfaI GTAC 2 cut(s) 480, 551
AfiI CCNNNNNNNGG 3 cut(s) 165, 314, 765
AflIII ACRYGT 1 cut(s) 710
AgsI TTSAA 3 cut(s) 241, 617, 686
AjnI CCWGG 1 cut(s) 733
AjuI GAANNNNNNNTTGG 2 cut(s) 514, 546
AleI CACNNNNGTG 1 cut(s) 298
AluBI AGCT 6 cut(s) 221, 368, 433, 449, 514, 675
AluI AGCT 6 cut(s) 221, 368, 433, 449, 514, 675
Alw21I GWGCWC 1 cut(s) 516
Alw26I GTCTC 1 cut(s) 206
AlwI GGATC 3 cut(s) 284, 356, 369
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 3 cut(s) 441, 634, 751
ApoI RAATTY 2 cut(s) 310, 639
AspS9I GGNCC 1 cut(s) 634
AsuHPI GGTGA 3 cut(s) 70, 149, 194
BalI TGGCCA 1 cut(s) 753
BamHI GGATCC 1 cut(s) 361
BanII GRGCYC 1 cut(s) 516
Bbv12I GWGCWC 1 cut(s) 516
BccI CCATC 1 cut(s) 695
BceAI ACGGC 1 cut(s) 246
BciT130I CCWGG 1 cut(s) 735
BclI TGATCA 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 206
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 735
BmgT120I GGNCC 1 cut(s) 634
BmiI GGNNCC 2 cut(s) 363, 635
BmrFI CCNGG 1 cut(s) 735
BmrI ACTGGG 1 cut(s) 118
BmuI ACTGGG 1 cut(s) 118
BoxI GACNNNNGTC 1 cut(s) 581
BpmI CTGGAG 1 cut(s) 756
BpuEI CTTGAG 1 cut(s) 42
BsaAI YACGTR 1 cut(s) 713
BsaJI CCNNGG 2 cut(s) 63, 414
BsaXI ACNNNNNCTCC 2 cut(s) 697, 727
Bsc4I CCNNNNNNNGG 3 cut(s) 165, 314, 765
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 735
BseDI CCNNGG 2 cut(s) 63, 414
BseGI GGATG 1 cut(s) 577
BseLI CCNNNNNNNGG 3 cut(s) 165, 314, 765
BseNI ACTGG 1 cut(s) 113
BseYI CCCAGC 1 cut(s) 566
BshFI GGCC 3 cut(s) 443, 636, 753
BsiHKAI GWGCWC 1 cut(s) 516
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 3 cut(s) 165, 314, 765
BsmAI GTCTC 1 cut(s) 206
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 3 cut(s) 443, 636, 753
Bsp1286I GDGCHC 1 cut(s) 516
Bsp1407I TGTACA 1 cut(s) 549
Bsp143I GATC 4 cut(s) 42, 184, 289, 361
Bsp19I CCATGG 2 cut(s) 63, 414
BspACI CCGC 1 cut(s) 96
BspANI GGCC 3 cut(s) 443, 636, 753
BspHI TCATGA 1 cut(s) 39
BspLI GGNNCC 2 cut(s) 363, 635
BspPI GGATC 3 cut(s) 284, 356, 369
BsrGI TGTACA 1 cut(s) 549
BsrI ACTGG 1 cut(s) 113
BssECI CCNNGG 2 cut(s) 63, 414
BssMI GATC 4 cut(s) 42, 184, 289, 361
BssT1I CCWWGG 2 cut(s) 63, 414
Bst2UI CCWGG 1 cut(s) 735
Bst4CI ACNGT 1 cut(s) 82
Bst6I CTCTTC 2 cut(s) 194, 469
BstAUI TGTACA 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 265, 435, 451, 537
BstDEI CTNAG 3 cut(s) 6, 224, 600
BstDSI CCRYGG 2 cut(s) 63, 414
BstF5I GGATG 1 cut(s) 577
BstKTI GATC 4 cut(s) 45, 187, 292, 364
BstMAI GTCTC 1 cut(s) 206
BstMBI GATC 4 cut(s) 42, 184, 289, 361
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 1 cut(s) 735
BstPAI GACNNNNGTC 1 cut(s) 581
BstSCI CCNGG 1 cut(s) 733
BstX2I RGATCY 1 cut(s) 361
BstXI CCANNNNNNTGG 1 cut(s) 357
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 3 cut(s) 443, 636, 753
BtgI CCRYGG 2 cut(s) 63, 414
BtsCI GGATG 1 cut(s) 577
BtsI GCAGTG 1 cut(s) 39
BtsIMutI CAGTG 1 cut(s) 39
Cac8I GCNNGC 4 cut(s) 265, 435, 451, 537
CaiI CAGNNNCTG 1 cut(s) 371
CciI TCATGA 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 634
Csp6I GTAC 2 cut(s) 479, 550
CviAII CATG 8 cut(s) 27, 40, 64, 142, 160, 277, 415, 661
CviQI GTAC 2 cut(s) 479, 550
DdeI CTNAG 3 cut(s) 6, 224, 600
DpnI GATC 4 cut(s) 44, 186, 291, 363
DpnII GATC 4 cut(s) 42, 184, 289, 361
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 2 cut(s) 194, 469
EarI CTCTTC 2 cut(s) 194, 469
Ecl136II GAGCTC 1 cut(s) 514
Eco130I CCWWGG 2 cut(s) 63, 414
Eco24I GRGCYC 1 cut(s) 516
Eco53kI GAGCTC 1 cut(s) 514
EcoICRI GAGCTC 1 cut(s) 514
EcoRII CCWGG 1 cut(s) 733
EcoT14I CCWWGG 2 cut(s) 63, 414
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 2 cut(s) 63, 414
FaeI CATG 8 cut(s) 30, 43, 67, 145, 163, 280, 418, 664
FalI AAGNNNNNCTT 2 cut(s) 466, 498
FaqI GGGAC 1 cut(s) 125
FatI CATG 8 cut(s) 26, 39, 63, 141, 159, 276, 414, 660
FbaI TGATCA 1 cut(s) 42
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 584
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 1 cut(s) 96
GluI GCNGC 1 cut(s) 96
GsaI CCCAGC 1 cut(s) 570
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 3 cut(s) 443, 636, 753
Hin1II CATG 8 cut(s) 30, 43, 67, 145, 163, 280, 418, 664
HindIII AAGCTT 2 cut(s) 431, 673
HinfI GANTC 1 cut(s) 588
HphI GGTGA 3 cut(s) 70, 149, 194
Hpy166II GTNNAC 3 cut(s) 24, 426, 550
Hpy188I TCNGA 3 cut(s) 15, 587, 593
Hpy188III TCNNGA 3 cut(s) 40, 371, 624
Hpy8I GTNNAC 3 cut(s) 24, 426, 550
HpyCH4III ACNGT 1 cut(s) 82
HpyCH4IV ACGT 2 cut(s) 128, 712
HpyCH4V TGCA 6 cut(s) 89, 119, 163, 303, 384, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 3 cut(s) 6, 224, 600
HpySE526I ACGT 2 cut(s) 128, 712
Hsp92II CATG 8 cut(s) 30, 43, 67, 145, 163, 280, 418, 664
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 4 cut(s) 42, 184, 289, 361
LmnI GCTCC 3 cut(s) 149, 373, 736
MaeII ACGT 2 cut(s) 128, 712
MaeIII GTNAC 4 cut(s) 137, 574, 621, 688
MalI GATC 4 cut(s) 44, 186, 291, 363
MboI GATC 4 cut(s) 42, 184, 289, 361
MboII GAAGA 3 cut(s) 181, 486, 781
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 1 cut(s) 516
MlsI TGGCCA 1 cut(s) 753
MluCI AATT 8 cut(s) 310, 340, 355, 456, 628, 639, 746, 775
MluNI TGGCCA 1 cut(s) 753
MmeI TCCRAC 1 cut(s) 217
MnlI CCTC 5 cut(s) 265, 399, 491, 587, 757
Mox20I TGGCCA 1 cut(s) 753
MscI TGGCCA 1 cut(s) 753
MseI TTAA 2 cut(s) 504, 781
MslI CAYNNNNRTG 2 cut(s) 298, 419
Msp20I TGGCCA 1 cut(s) 753
MspR9I CCNGG 1 cut(s) 735
MvaI CCWGG 1 cut(s) 735
MwoI GCNNNNNNNGC 1 cut(s) 95
NcoI CCATGG 2 cut(s) 63, 414
NdeII GATC 4 cut(s) 42, 184, 289, 361
NlaIII CATG 8 cut(s) 30, 43, 67, 145, 163, 280, 418, 664
NlaIV GGNNCC 2 cut(s) 363, 635
NmuCI GTSAC 4 cut(s) 137, 574, 621, 688
OliI CACNNNNGTG 1 cut(s) 298
PagI TCATGA 1 cut(s) 39
PfeI GAWTC 1 cut(s) 588
PflMI CCANNNNNTGG 1 cut(s) 314
PfoI TCCNGGA 1 cut(s) 733
PkrI GCNGC 1 cut(s) 97
Ppu21I YACGTR 1 cut(s) 713
PshAI GACNNNNGTC 1 cut(s) 581
Psp124BI GAGCTC 1 cut(s) 516
Psp1406I AACGTT 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 733
PspFI CCCAGC 1 cut(s) 566
PspGI CCWGG 1 cut(s) 733
PspN4I GGNNCC 2 cut(s) 363, 635
PspPI GGNCC 1 cut(s) 634
PstNI CAGNNNCTG 1 cut(s) 371
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 2 cut(s) 480, 551
RsaNI GTAC 2 cut(s) 479, 550
RseI CAYNNNNRTG 2 cut(s) 298, 419
SacI GAGCTC 1 cut(s) 516
SaqAI TTAA 2 cut(s) 504, 781
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 42, 184, 289, 361
Sau96I GGNCC 1 cut(s) 634
ScrFI CCNGG 1 cut(s) 735
SduI GDGCHC 1 cut(s) 516
SmiMI CAYNNNNRTG 2 cut(s) 298, 419
SmlI CTYRAG 1 cut(s) 57
SmoI CTYRAG 1 cut(s) 57
Sse9I AATT 8 cut(s) 310, 340, 355, 456, 628, 639, 746, 775
SsiI CCGC 1 cut(s) 96
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 1 cut(s) 733
StyI CCWWGG 2 cut(s) 63, 414
TaaI ACNGT 1 cut(s) 82
TaiI ACGT 2 cut(s) 131, 715
TasI AATT 8 cut(s) 310, 340, 355, 456, 628, 639, 746, 775
TatI WGTACW 1 cut(s) 549
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 588
Tru1I TTAA 2 cut(s) 504, 781
Tru9I TTAA 2 cut(s) 504, 781
TscAI CASTG 1 cut(s) 39
TseFI GTSAC 4 cut(s) 137, 574, 621, 688
Tsp45I GTSAC 4 cut(s) 137, 574, 621, 688
TspDTI ATGAA 2 cut(s) 28, 410
TspRI CASTG 1 cut(s) 39
Van91I CCANNNNNTGG 1 cut(s) 314
XapI RAATTY 2 cut(s) 310, 639
XcmI CCANNNNNNNNNTGG 1 cut(s) 200
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.