Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Reverse (-)

25478594 .. 25479655

Gene Structure 1062 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1219300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGGCTATGTTTCAGAACTTGCTTCCATGGATAGTGCTCGTCACTCTTTTGGTTCCAACCATGGGCAACAAAACCTCCATTGGCGAGAAAGCCGCAAGCAACGATTGGGAAGACGCTCACGCAACGTTTTATGGTGACATGGGTGGTTCAGAAACCATGAAAGGGGCATGTGGATATGGTGATCTGTTTCGACAAGGCTATGGCTTGGAGACAACAGCCCTAAGCACAGTACTATTCAACAACGGGCTGACTTGCGGTGCGTGTTTCGAGGTAATGTGTGTTGATGATCCACAATGGTGCCTTCCTAATGTTGGGACTATCAAAATAACAGCTACCAATTTTTGTCCACCAAACTGGGACCCAGCTTCTGACCACTGGTGCAATCCACCACAAAAACACTTTGACTTGTCCATGCCTATGTTCACAAAGCTTGCACAGGCCAAAGCTGGGATAATACCCATCAAGTACAGAAGAGTCCCATGCTCCAAACAAGGAGGGGTTAAATTTGAGTTCCATGGAAACCCTTACTGGCTTGCTGTGTTGGTCTTCAATGTCGGAGGCGCCGGAGATGTGACGAGTGTCAGAATCAGAGGCTCAAACACTGATTGGCTTCAGATGTCAAGAAACTGGGGCCAAATGTGGCAGACGGGAAACAAGATGGTAGGGCAAAGCTTGTCCTTCCAGGTTACTACTAGTGATGGGAAAACACTTGAGTTTGATAATGTTGCACCAGAAAATTGGCAATTTGGCCAAACCTTTGAGGGGGGAAGTAATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

260

Amino Acids

28.57

Weight (kDa)

5.54

Isoelectric Point (pI)

26.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	41 - 163	2.5e-06	EXPB1-like domain 1
DPBB_1	PF03330	71 - 156	1.5e-19	Lytic transglycolase
Expansin_C	PF01357	167 - 244	1.1e-29	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	297, 560
AciI	CCGC	2 cut(s)	93, 255
AclI	AACGTT	1 cut(s)	125
AclWI	GGATC	1 cut(s)	281
AcoI	YGGCCR	1 cut(s)	748
AcsI	RAATTY	1 cut(s)	503
AcuI	CTGAAG	1 cut(s)	596
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	2 cut(s)	231, 467
AfiI	CCNNNNNNNGG	5 cut(s)	62, 162, 311, 447, 762
AgsI	TTSAA	2 cut(s)	238, 550
AhlI	ACTAGT	1 cut(s)	692
AjnI	CCWGG	1 cut(s)	681
AleI	CACNNNNGTG	1 cut(s)	295
AluBI	AGCT	5 cut(s)	332, 365, 430, 446, 672
AluI	AGCT	5 cut(s)	332, 365, 430, 446, 672
Alw21I	GWGCWC	1 cut(s)	39
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	281
AlwNI	CAGNNNCTG	1 cut(s)	368
AoxI	GGCC	3 cut(s)	438, 631, 748
ApoI	RAATTY	1 cut(s)	503
AspLEI	GCGC	1 cut(s)	563
AspS9I	GGNCC	2 cut(s)	358, 631
AsuHPI	GGTGA	2 cut(s)	146, 191
AvaII	GGWCC	1 cut(s)	358
BalI	TGGCCA	1 cut(s)	750
BanI	GGYRCC	2 cut(s)	297, 560
BbsI	GAAGAC	2 cut(s)	117, 538
Bbv12I	GWGCWC	1 cut(s)	39
BccI	CCATC	3 cut(s)	467, 652, 692
BciT130I	CCWGG	1 cut(s)	683
BcoDI	GTCTC	1 cut(s)	203
BcuI	ACTAGT	1 cut(s)	692
BfaI	CTAG	1 cut(s)	693
BfoI	RGCGCY	1 cut(s)	564
BisI	GCNGC	1 cut(s)	93
BlsI	GCNGC	1 cut(s)	94
BmcAI	AGTACT	1 cut(s)	231
Bme1390I	CCNGG	1 cut(s)	683
Bme18I	GGWCC	1 cut(s)	358
BmgT120I	GGNCC	2 cut(s)	358, 631
BmiI	GGNNCC	6 cut(s)	54, 299, 359, 360, 562, 632
BmrFI	CCNGG	1 cut(s)	683
BmrI	ACTGGG	2 cut(s)	364, 637
BmuI	ACTGGG	2 cut(s)	364, 637
BoxI	GACNNNNGTC	1 cut(s)	578
BpiI	GAAGAC	2 cut(s)	117, 538
Bpu10I	CCTNAGC	1 cut(s)	221
BpuEI	CTTGAG	1 cut(s)	731
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	3 cut(s)	26, 60, 514
BsaXI	ACNNNNNCTCC	2 cut(s)	59, 89
Bsc4I	CCNNNNNNNGG	5 cut(s)	62, 162, 311, 447, 762
Bse1I	ACTGG	4 cut(s)	359, 380, 533, 632
BseBI	CCWGG	1 cut(s)	683
BseDI	CCNNGG	3 cut(s)	26, 60, 514
BseLI	CCNNNNNNNGG	5 cut(s)	62, 162, 311, 447, 762
BseNI	ACTGG	4 cut(s)	359, 380, 533, 632
BseYI	CCCAGC	2 cut(s)	361, 446
BshFI	GGCC	3 cut(s)	440, 633, 750
BshNI	GGYRCC	2 cut(s)	297, 560
BsiHKAI	GWGCWC	1 cut(s)	39
BsiSI	CCGG	1 cut(s)	564
BslFI	GGGAC	3 cut(s)	328, 371, 461
BslI	CCNNNNNNNGG	5 cut(s)	62, 162, 311, 447, 762
BsmAI	GTCTC	1 cut(s)	203
BsmFI	GGGAC	3 cut(s)	328, 371, 461
BsnI	GGCC	3 cut(s)	440, 633, 750
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	181, 286
Bsp19I	CCATGG	3 cut(s)	26, 60, 514
BspACI	CCGC	2 cut(s)	93, 255
BspANI	GGCC	3 cut(s)	440, 633, 750
BspLI	GGNNCC	6 cut(s)	54, 299, 359, 360, 562, 632
BspPI	GGATC	1 cut(s)	281
BspT107I	GGYRCC	2 cut(s)	297, 560
BsrI	ACTGG	4 cut(s)	359, 380, 533, 632
BssECI	CCNNGG	3 cut(s)	26, 60, 514
BssMI	GATC	2 cut(s)	181, 286
BssNI	GRCGYC	1 cut(s)	561
BssT1I	CCWWGG	3 cut(s)	26, 60, 514
Bst2UI	CCWGG	1 cut(s)	683
Bst4CI	ACNGT	1 cut(s)	229
Bst6I	CTCTTC	1 cut(s)	466
BstACI	GRCGYC	1 cut(s)	561
BstC8I	GCNNGC	3 cut(s)	97, 432, 534
BstDEI	CTNAG	1 cut(s)	221
BstDSI	CCRYGG	3 cut(s)	26, 60, 514
BstH2I	RGCGCY	1 cut(s)	564
BstHHI	GCGC	1 cut(s)	563
BstKTI	GATC	2 cut(s)	184, 289
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	2 cut(s)	181, 286
BstNI	CCWGG	1 cut(s)	683
BstNSI	RCATGY	1 cut(s)	171
BstPAI	GACNNNNGTC	1 cut(s)	578
BstSCI	CCNGG	1 cut(s)	681
BstV2I	GAAGAC	2 cut(s)	117, 538
BstXI	CCANNNNNNTGG	2 cut(s)	354, 738
BsuRI	GGCC	3 cut(s)	440, 633, 750
BtgI	CCRYGG	3 cut(s)	26, 60, 514
BtsIMutI	CAGTG	2 cut(s)	373, 600
Cac8I	GCNNGC	3 cut(s)	97, 432, 534
CaiI	CAGNNNCTG	1 cut(s)	368
CfoI	GCGC	1 cut(s)	563
Cfr13I	GGNCC	2 cut(s)	358, 631
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	2 cut(s)	230, 466
CviAII	CATG	8 cut(s)	27, 61, 139, 157, 168, 412, 480, 515
CviQI	GTAC	2 cut(s)	230, 466
DdeI	CTNAG	1 cut(s)	221
DinI	GGCGCC	1 cut(s)	562
DpnI	GATC	2 cut(s)	183, 288
DpnII	GATC	2 cut(s)	181, 286
EaeI	YGGCCR	1 cut(s)	748
Eam1104I	CTCTTC	1 cut(s)	466
EarI	CTCTTC	1 cut(s)	466
Eco130I	CCWWGG	3 cut(s)	26, 60, 514
Eco47I	GGWCC	1 cut(s)	358
Eco57I	CTGAAG	1 cut(s)	596
EcoO109I	RGGNCCY	1 cut(s)	358
EcoRII	CCWGG	1 cut(s)	681
EcoT14I	CCWWGG	3 cut(s)	26, 60, 514
EgeI	GGCGCC	1 cut(s)	562
EheI	GGCGCC	1 cut(s)	562
ErhI	CCWWGG	3 cut(s)	26, 60, 514
FaeI	CATG	8 cut(s)	30, 64, 142, 160, 171, 415, 483, 518
FaqI	GGGAC	3 cut(s)	328, 371, 461
FatI	CATG	8 cut(s)	26, 60, 138, 156, 167, 411, 479, 514
Fnu4HI	GCNGC	1 cut(s)	93
Fsp4HI	GCNGC	1 cut(s)	93
FspBI	CTAG	1 cut(s)	693
GlaI	GCGC	1 cut(s)	562
GluI	GCNGC	1 cut(s)	93
GsaI	CCCAGC	2 cut(s)	365, 450
HaeII	RGCGCY	1 cut(s)	564
HaeIII	GGCC	3 cut(s)	440, 633, 750
HapII	CCGG	1 cut(s)	564
HgaI	GACGC	1 cut(s)	122
HhaI	GCGC	1 cut(s)	563
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	8 cut(s)	30, 64, 142, 160, 171, 415, 483, 518
Hin6I	GCGC	1 cut(s)	561
HinP1I	GCGC	1 cut(s)	561
HindIII	AAGCTT	2 cut(s)	428, 670
HinfI	GANTC	2 cut(s)	474, 585
HpaII	CCGG	1 cut(s)	564
HphI	GGTGA	2 cut(s)	146, 191
Hpy166II	GTNNAC	2 cut(s)	347, 423
Hpy188I	TCNGA	7 cut(s)	15, 151, 370, 557, 584, 590, 615
Hpy188III	TCNNGA	1 cut(s)	621
Hpy8I	GTNNAC	2 cut(s)	347, 423
HpyAV	CCTTC	2 cut(s)	311, 688
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4IV	ACGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	381, 434, 728
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	125
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	8 cut(s)	30, 64, 142, 160, 171, 415, 483, 518
HspAI	GCGC	1 cut(s)	561
KasI	GGCGCC	1 cut(s)	560
KflI	GGGWCCC	1 cut(s)	358
Kzo9I	GATC	2 cut(s)	181, 286
LmnI	GCTCC	1 cut(s)	488
MaeI	CTAG	1 cut(s)	693
MaeII	ACGT	1 cut(s)	125
MaeIII	GTNAC	4 cut(s)	40, 134, 571, 685
MalI	GATC	2 cut(s)	183, 288
MboI	GATC	2 cut(s)	181, 286
MboII	GAAGA	3 cut(s)	122, 483, 538
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	750
MluCI	AATT	5 cut(s)	337, 503, 736, 743, 772
MluNI	TGGCCA	1 cut(s)	750
Mly113I	GGCGCC	1 cut(s)	561
MlyI	GAGTC	1 cut(s)	483
MmeI	TCCRAC	2 cut(s)	80, 535
MnlI	CCTC	6 cut(s)	85, 262, 488, 551, 584, 754
Mox20I	TGGCCA	1 cut(s)	750
MscI	TGGCCA	1 cut(s)	750
MseI	TTAA	1 cut(s)	501
MslI	CAYNNNNRTG	2 cut(s)	295, 416
Msp20I	TGGCCA	1 cut(s)	750
MspI	CCGG	1 cut(s)	564
MspR9I	CCNGG	1 cut(s)	683
MvaI	CCWGG	1 cut(s)	683
NarI	GGCGCC	1 cut(s)	561
NcoI	CCATGG	3 cut(s)	26, 60, 514
NdeII	GATC	2 cut(s)	181, 286
NlaIII	CATG	8 cut(s)	30, 64, 142, 160, 171, 415, 483, 518
NlaIV	GGNNCC	6 cut(s)	54, 299, 359, 360, 562, 632
NmuCI	GTSAC	3 cut(s)	40, 134, 571
NspI	RCATGY	1 cut(s)	171
OliI	CACNNNNGTG	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	585
PkrI	GCNGC	1 cut(s)	94
PleI	GAGTC	1 cut(s)	482
PluTI	GGCGCC	1 cut(s)	564
PpsI	GAGTC	1 cut(s)	482
PpuMI	RGGWCCY	1 cut(s)	358
PshAI	GACNNNNGTC	1 cut(s)	578
Psp1406I	AACGTT	1 cut(s)	125
Psp5II	RGGWCCY	1 cut(s)	358
Psp6I	CCWGG	1 cut(s)	681
PspFI	CCCAGC	2 cut(s)	361, 446
PspGI	CCWGG	1 cut(s)	681
PspN4I	GGNNCC	6 cut(s)	54, 299, 359, 360, 562, 632
PspPI	GGNCC	2 cut(s)	358, 631
PspPPI	RGGWCCY	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	368
RsaI	GTAC	2 cut(s)	231, 467
RsaNI	GTAC	2 cut(s)	230, 466
RseI	CAYNNNNRTG	2 cut(s)	295, 416
SaqAI	TTAA	1 cut(s)	501
SatI	GCNGC	1 cut(s)	93
Sau3AI	GATC	2 cut(s)	181, 286
Sau96I	GGNCC	2 cut(s)	358, 631
ScaI	AGTACT	1 cut(s)	231
SchI	GAGTC	1 cut(s)	483
ScrFI	CCNGG	1 cut(s)	683
SduI	GDGCHC	1 cut(s)	39
SfoI	GGCGCC	1 cut(s)	562
SinI	GGWCC	1 cut(s)	358
SmiMI	CAYNNNNRTG	2 cut(s)	295, 416
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
SpeI	ACTAGT	1 cut(s)	692
Sse9I	AATT	5 cut(s)	337, 503, 736, 743, 772
SsiI	CCGC	2 cut(s)	93, 255
SspDI	GGCGCC	1 cut(s)	560
SspMI	CTAG	1 cut(s)	693
StyD4I	CCNGG	1 cut(s)	681
StyI	CCWWGG	3 cut(s)	26, 60, 514
TaaI	ACNGT	1 cut(s)	229
TaiI	ACGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	190, 267
TasI	AATT	5 cut(s)	337, 503, 736, 743, 772
TatI	WGTACW	2 cut(s)	229, 465
TauI	GCSGC	1 cut(s)	95
TfiI	GAWTC	1 cut(s)	585
Tru1I	TTAA	1 cut(s)	501
Tru9I	TTAA	1 cut(s)	501
TscAI	CASTG	2 cut(s)	380, 607
TseFI	GTSAC	3 cut(s)	40, 134, 571
Tsp45I	GTSAC	3 cut(s)	40, 134, 571
TspDTI	ATGAA	1 cut(s)	173
TspRI	CASTG	2 cut(s)	380, 607
VpaK11BI	GGWCC	1 cut(s)	358
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	171
XspI	CTAG	1 cut(s)	693
ZrmI	AGTACT	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.