Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8047734.1

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Forward (+)

42 .. 551

Gene Structure 510 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8047734.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 510 bp

atgtgtgtcaacgatccacagtggtgcaaacctaacgcagttatcaaagtcactgcaacaaatttctgtccaccaaattgggttccagctcctgatcattggtgcaacccacctcgcaaacactttgacttgtccatggctatgttcacaaaacttgcagaatacaaagccggtatcattccagttatatatcgccgaaccccatgtgacagaaatggagggattaagtttgaggttaagggaaacccctactggacttctgttgtggtttataatgttgctggtgctggtcttgttaaccacgtcgcaattaaggggtccaactccggttggatttcaatgacgcgcaattggggccaagtttggcagaccggagtcaaattagtagggcaaggcttatcattccgggtcactgctggagatggggaagtgctttggttagataatgttgcaccagcgaattggcaattcggtcaaacctacgagggacacggcaattttataggctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

169

Amino Acids

18.75

Weight (kDa)

9.04

Isoelectric Point (pI)

7.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	273
AccII	CGCG	1 cut(s)	346
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	61
AgsI	TTSAA	1 cut(s)	339
AjiI	CACGTC	1 cut(s)	304
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	1 cut(s)	89
AluI	AGCT	1 cut(s)	89
AlwI	GGATC	1 cut(s)	8
AlwNI	CAGNNNCTG	1 cut(s)	92
AoxI	GGCC	1 cut(s)	355
ApoI	RAATTY	1 cut(s)	61
AspLEI	GCGC	1 cut(s)	348
AspS9I	GGNCC	2 cut(s)	318, 355
AsuC2I	CCSGG	1 cut(s)	407
AvaII	GGWCC	1 cut(s)	318
BccI	CCATC	1 cut(s)	416
BceAI	ACGGC	1 cut(s)	508
BclI	TGATCA	1 cut(s)	94
BcnI	CCSGG	1 cut(s)	407
Bme1390I	CCNGG	1 cut(s)	407
Bme18I	GGWCC	1 cut(s)	318
BmgBI	CACGTC	1 cut(s)	304
BmgT120I	GGNCC	2 cut(s)	318, 355
BmiI	GGNNCC	3 cut(s)	84, 319, 356
BmrFI	CCNGG	1 cut(s)	407
BoxI	GACNNNNGTC	1 cut(s)	374
BpmI	CTGGAG	1 cut(s)	438
BpuMI	CCSGG	1 cut(s)	407
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	2 cut(s)	326, 371
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	182, 257
BseDI	CCNNGG	1 cut(s)	135
BseNI	ACTGG	2 cut(s)	182, 257
Bsh1236I	CGCG	1 cut(s)	346
BshFI	GGCC	1 cut(s)	357
BsiSI	CCGG	4 cut(s)	171, 327, 372, 406
BslFI	GGGAC	1 cut(s)	501
BsmFI	GGGAC	1 cut(s)	501
BsnI	GGCC	1 cut(s)	357
Bsp143I	GATC	2 cut(s)	13, 94
Bsp19I	CCATGG	1 cut(s)	135
BspANI	GGCC	1 cut(s)	357
BspFNI	CGCG	1 cut(s)	346
BspLI	GGNNCC	3 cut(s)	84, 319, 356
BspPI	GGATC	1 cut(s)	8
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	2 cut(s)	182, 257
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	2 cut(s)	13, 94
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	21
BstDSI	CCRYGG	1 cut(s)	135
BstFNI	CGCG	1 cut(s)	346
BstHHI	GCGC	1 cut(s)	348
BstKTI	GATC	2 cut(s)	16, 97
BstMBI	GATC	2 cut(s)	13, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	354
BstPAI	GACNNNNGTC	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	346
BstXI	CCANNNNNNTGG	2 cut(s)	78, 462
BsuRI	GGCC	1 cut(s)	357
BtgI	CCRYGG	1 cut(s)	135
BtrI	CACGTC	1 cut(s)	304
BtsI	GCAGTG	2 cut(s)	51, 411
BtsIMutI	CAGTG	3 cut(s)	26, 51, 411
CaiI	CAGNNNCTG	1 cut(s)	92
CfoI	GCGC	1 cut(s)	348
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	2 cut(s)	318, 355
CseI	GACGC	1 cut(s)	352
CviAII	CATG	2 cut(s)	136, 204
CviJI	RGCY	6 cut(s)	89, 140, 170, 357, 396, 507
CviKI_1	RGCY	6 cut(s)	89, 140, 170, 357, 396, 507
DpnI	GATC	2 cut(s)	15, 96
DpnII	GATC	2 cut(s)	13, 94
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	318
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 207
FaiI	YATR	7 cut(s)	137, 143, 188, 190, 205, 273, 503
FaqI	GGGAC	1 cut(s)	501
FatI	CATG	2 cut(s)	135, 203
FbaI	TGATCA	1 cut(s)	94
GlaI	GCGC	1 cut(s)	347
GsuI	CTGGAG	1 cut(s)	438
HaeIII	GGCC	1 cut(s)	357
HapII	CCGG	4 cut(s)	171, 327, 372, 406
HgaI	GACGC	1 cut(s)	352
HhaI	GCGC	1 cut(s)	348
Hin1II	CATG	2 cut(s)	139, 207
Hin6I	GCGC	1 cut(s)	346
HinP1I	GCGC	1 cut(s)	346
HincII	GTYRAC	2 cut(s)	10, 298
HindII	GTYRAC	2 cut(s)	10, 298
HinfI	GANTC	1 cut(s)	375
HpaI	GTTAAC	1 cut(s)	298
HpaII	CCGG	4 cut(s)	171, 327, 372, 406
Hpy166II	GTNNAC	4 cut(s)	10, 71, 147, 298
Hpy188III	TCNNGA	1 cut(s)	92
Hpy8I	GTNNAC	4 cut(s)	10, 71, 147, 298
Hpy99I	CGWCG	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	21
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	5 cut(s)	27, 56, 105, 158, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	354
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	139, 207
HspAI	GCGC	1 cut(s)	346
Ksp22I	TGATCA	1 cut(s)	94
KspAI	GTTAAC	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	13, 94
LmnI	GCTCC	1 cut(s)	94
MaeII	ACGT	1 cut(s)	303
MaeIII	GTNAC	3 cut(s)	49, 206, 409
MalI	GATC	2 cut(s)	15, 96
MboI	GATC	2 cut(s)	13, 94
MfeI	CAATTG	1 cut(s)	349
MluCI	AATT	8 cut(s)	61, 76, 309, 349, 380, 460, 467, 496
MlyI	GAGTC	1 cut(s)	384
MmeI	TCCRAC	2 cut(s)	311, 345
MnlI	CCTC	4 cut(s)	123, 212, 226, 478
MseI	TTAA	4 cut(s)	225, 237, 297, 312
MslI	CAYNNNNRTG	2 cut(s)	22, 140
MspI	CCGG	4 cut(s)	171, 327, 372, 406
MspR9I	CCNGG	1 cut(s)	407
MunI	CAATTG	1 cut(s)	349
MvnI	CGCG	1 cut(s)	346
MwoI	GCNNNNNNNGC	1 cut(s)	354
NciI	CCSGG	1 cut(s)	407
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	2 cut(s)	13, 94
NlaIII	CATG	2 cut(s)	139, 207
NlaIV	GGNNCC	3 cut(s)	84, 319, 356
NmuCI	GTSAC	3 cut(s)	49, 206, 409
OliI	CACNNNNGTG	1 cut(s)	22
PleI	GAGTC	1 cut(s)	383
PpsI	GAGTC	1 cut(s)	383
PshAI	GACNNNNGTC	1 cut(s)	374
PsiI	TTATAA	1 cut(s)	273
PspN4I	GGNNCC	3 cut(s)	84, 319, 356
PspPI	GGNCC	2 cut(s)	318, 355
PstNI	CAGNNNCTG	1 cut(s)	92
RseI	CAYNNNNRTG	2 cut(s)	22, 140
SaqAI	TTAA	4 cut(s)	225, 237, 297, 312
Sau3AI	GATC	2 cut(s)	13, 94
Sau96I	GGNCC	2 cut(s)	318, 355
SchI	GAGTC	1 cut(s)	384
ScrFI	CCNGG	1 cut(s)	407
SetI	ASST	6 cut(s)	34, 91, 115, 237, 306, 482
SinI	GGWCC	1 cut(s)	318
SmiMI	CAYNNNNRTG	2 cut(s)	22, 140
Sse9I	AATT	8 cut(s)	61, 76, 309, 349, 380, 460, 467, 496
StyD4I	CCNGG	1 cut(s)	405
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	21
TaiI	ACGT	1 cut(s)	306
TaqII	GACCGA	1 cut(s)	461
TasI	AATT	8 cut(s)	61, 76, 309, 349, 380, 460, 467, 496
Tru1I	TTAA	4 cut(s)	225, 237, 297, 312
Tru9I	TTAA	4 cut(s)	225, 237, 297, 312
TscAI	CASTG	3 cut(s)	26, 58, 418
TseFI	GTSAC	3 cut(s)	49, 206, 409
Tsp45I	GTSAC	3 cut(s)	49, 206, 409
TspRI	CASTG	3 cut(s)	26, 58, 418
VpaK11BI	GGWCC	1 cut(s)	318
XapI	RAATTY	1 cut(s)	61

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.