Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Forward (+)

2313271 .. 2314241

Gene Structure 971 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG026100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGAGCAATCCAATCGGCGAGAGTCCTGACCATGACTGGCACGATGCACATGCAACCTTCTACGGCGACATGAGTGGAAGCGAAACCATGCAGGGGGCTTGCGGATATGGTGATCTCTTCCAACAAGGTTATGGTCTAGATACTGCAGCTCTAAGCACAACATTGTTCAACAATGGATTAACTTGCGGTGCTTGTTTCGAGATCATGTGCGTCAACGATCCACAATGGTGCATCCCTAATGCAGGCACAATCAAAATTACTGCAACAAATTTTTGTCCACCAAACTGGGCTCAAGGAGGCTGGTGCAACCCGCCATACGATCACTTCGACTTGTCCATGCCTATGTTCACAAAAATCGCGCAATATAAAGCTGGAATAGTTCCGGTTAAGTTTCGCCGAGTCCCGTGTGCTAAAACAGGAGGGGTTAAGTTTGAGCTTAAAGGAAACCCCTACTGGATTACTGCTTTGATTTACAATGTGGGTGGTGCCGGTGATGTTACCGCTGTCAGAGTCAAAGGGTCTAATTCCGATTGGCTTCAAATGTCTCGCAATTGGGGCCAAGTTTGGCAGACCAGCGCAAAATTAGTAGGGCAAAGCTTATCATTCCAAGTCACTACCAGTGAAGACAAAACCATTGAGTTTGATGATGTTGCACCAGGGAATTGGCAATTTGGTCAACCATATGAGGGGAATGGTAACTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

234

Amino Acids

25.63

Weight (kDa)

4.94

Isoelectric Point (pI)

29.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	18 - 136	8.1e-07	EXPB1-like domain 1
DPBB_1	PF03330	48 - 131	2e-20	Lytic transglycolase
Expansin_C	PF01357	142 - 219	2.2e-28	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	485
AccII	CGCG	1 cut(s)	359
AciI	CCGC	4 cut(s)	102, 186, 311, 501
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	268
AfiI	CCNNNNNNNGG	3 cut(s)	93, 242, 686
AgsI	TTSAA	2 cut(s)	169, 539
AjnI	CCWGG	1 cut(s)	655
AleI	CACNNNNGTG	1 cut(s)	226
AluBI	AGCT	4 cut(s)	149, 371, 436, 597
AluI	AGCT	4 cut(s)	149, 371, 436, 597
Alw26I	GTCTC	1 cut(s)	549
AlwI	GGATC	1 cut(s)	212
AoxI	GGCC	1 cut(s)	556
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	268
AspLEI	GCGC	2 cut(s)	361, 578
AspS9I	GGNCC	1 cut(s)	556
AsuHPI	GGTGA	2 cut(s)	122, 503
BanI	GGYRCC	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	292
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	79
BcgI	CGANNNNNNTGC	3 cut(s)	29, 32, 66
BciT130I	CCWGG	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	549
BfaI	CTAG	1 cut(s)	137
BfmI	CTRYAG	1 cut(s)	144
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	657
BmgT120I	GGNCC	1 cut(s)	556
BmiI	GGNNCC	2 cut(s)	487, 557
BmrFI	CCNGG	1 cut(s)	657
BmrI	ACTGGG	1 cut(s)	295
BmsI	GCATC	2 cut(s)	34, 240
BmuI	ACTGGG	1 cut(s)	295
BpiI	GAAGAC	1 cut(s)	630
BpuEI	CTTGAG	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	656
BsaWI	WCCGGW	1 cut(s)	382
Bsc4I	CCNNNNNNNGG	3 cut(s)	93, 242, 686
Bse118I	RCCGGY	1 cut(s)	488
Bse1I	ACTGG	4 cut(s)	41, 290, 458, 618
BseBI	CCWGG	1 cut(s)	657
BseDI	CCNNGG	1 cut(s)	656
BseGI	GGATG	1 cut(s)	231
BseLI	CCNNNNNNNGG	3 cut(s)	93, 242, 686
BseNI	ACTGG	4 cut(s)	41, 290, 458, 618
BseXI	GCAGC	1 cut(s)	158
Bsh1236I	CGCG	1 cut(s)	359
BshFI	GGCC	1 cut(s)	558
BshNI	GGYRCC	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	383, 489
BslFI	GGGAC	1 cut(s)	386
BslI	CCNNNNNNNGG	3 cut(s)	93, 242, 686
BsmAI	GTCTC	1 cut(s)	549
BsmFI	GGGAC	1 cut(s)	386
BsnI	GGCC	1 cut(s)	558
Bsp1286I	GDGCHC	1 cut(s)	292
Bsp143I	GATC	4 cut(s)	112, 201, 217, 319
BspACI	CCGC	4 cut(s)	102, 186, 311, 501
BspANI	GGCC	1 cut(s)	558
BspFNI	CGCG	1 cut(s)	359
BspLI	GGNNCC	2 cut(s)	487, 557
BspMAI	CTGCAG	1 cut(s)	148
BspPI	GGATC	1 cut(s)	212
BspT107I	GGYRCC	1 cut(s)	485
BsrFI	RCCGGY	1 cut(s)	488
BsrI	ACTGG	4 cut(s)	41, 290, 458, 618
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	1 cut(s)	656
BssMI	GATC	4 cut(s)	112, 201, 217, 319
Bst2UI	CCWGG	1 cut(s)	657
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	100, 244
BstDEI	CTNAG	1 cut(s)	152
BstENI	CCTNNNNNAGG	1 cut(s)	240
BstF5I	GGATG	1 cut(s)	231
BstFNI	CGCG	1 cut(s)	359
BstHHI	GCGC	2 cut(s)	361, 578
BstKTI	GATC	4 cut(s)	115, 204, 220, 322
BstMAI	GTCTC	1 cut(s)	549
BstMBI	GATC	4 cut(s)	112, 201, 217, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	555
BstNI	CCWGG	1 cut(s)	657
BstNSI	RCATGY	1 cut(s)	53
BstSCI	CCNGG	1 cut(s)	655
BstSFI	CTRYAG	1 cut(s)	144
BstUI	CGCG	1 cut(s)	359
BstV1I	GCAGC	1 cut(s)	158
BstV2I	GAAGAC	1 cut(s)	630
BstXI	CCANNNNNNTGG	2 cut(s)	285, 663
BsuRI	GGCC	1 cut(s)	558
BtsCI	GGATG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	625
Cac8I	GCNNGC	2 cut(s)	100, 244
CfoI	GCGC	2 cut(s)	361, 578
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	1 cut(s)	556
CseI	GACGC	1 cut(s)	199
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	6 cut(s)	32, 50, 70, 88, 205, 337
CviJI	RGCY	9 cut(s)	98, 149, 290, 300, 371, 436, 535, 558, 597
CviKI_1	RGCY	9 cut(s)	98, 149, 290, 300, 371, 436, 535, 558, 597
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	4 cut(s)	114, 203, 219, 321
DpnII	GATC	4 cut(s)	112, 201, 217, 319
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	292
EcoNI	CCTNNNNNAGG	1 cut(s)	240
EcoRII	CCWGG	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	292
FaeI	CATG	6 cut(s)	35, 53, 73, 91, 208, 340
FaqI	GGGAC	1 cut(s)	386
FatI	CATG	6 cut(s)	31, 49, 69, 87, 204, 336
FauI	CCCGC	1 cut(s)	318
FauNDI	CATATG	1 cut(s)	682
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	292
Fsp4HI	GCNGC	1 cut(s)	147
FspBI	CTAG	1 cut(s)	137
GlaI	GCGC	2 cut(s)	360, 577
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	558
HapII	CCGG	2 cut(s)	383, 489
HgaI	GACGC	1 cut(s)	199
HhaI	GCGC	2 cut(s)	361, 578
Hin1II	CATG	6 cut(s)	35, 53, 73, 91, 208, 340
Hin6I	GCGC	2 cut(s)	359, 576
HinP1I	GCGC	2 cut(s)	359, 576
HincII	GTYRAC	2 cut(s)	214, 677
HindII	GTYRAC	2 cut(s)	214, 677
HindIII	AAGCTT	1 cut(s)	595
HinfI	GANTC	3 cut(s)	22, 399, 510
HpaII	CCGG	2 cut(s)	383, 489
HphI	GGTGA	2 cut(s)	122, 503
Hpy166II	GTNNAC	4 cut(s)	214, 278, 348, 677
Hpy188I	TCNGA	2 cut(s)	509, 529
Hpy188III	TCNNGA	3 cut(s)	26, 137, 199
Hpy8I	GTNNAC	4 cut(s)	214, 278, 348, 677
HpyAV	CCTTC	1 cut(s)	67
HpyCH4V	TGCA	9 cut(s)	47, 53, 91, 146, 231, 242, 263, 306, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	555
HpyF3I	CTNAG	1 cut(s)	152
Hsp92II	CATG	6 cut(s)	35, 53, 73, 91, 208, 340
HspAI	GCGC	2 cut(s)	359, 576
Kzo9I	GATC	4 cut(s)	112, 201, 217, 319
Lsp1109I	GCAGC	1 cut(s)	158
LweI	GCATC	2 cut(s)	34, 240
MaeI	CTAG	1 cut(s)	137
MaeIII	GTNAC	3 cut(s)	496, 610, 695
MalI	GATC	4 cut(s)	114, 203, 219, 321
MboI	GATC	4 cut(s)	112, 201, 217, 319
MboII	GAAGA	2 cut(s)	109, 635
MfeI	CAATTG	1 cut(s)	550
MhlI	GDGCHC	1 cut(s)	292
MluCI	AATT	7 cut(s)	255, 268, 523, 550, 581, 661, 668
MlyI	GAGTC	3 cut(s)	31, 408, 519
MmeI	TCCRAC	1 cut(s)	145
MnlI	CCTC	3 cut(s)	290, 413, 679
MseI	TTAA	4 cut(s)	179, 387, 426, 438
MslI	CAYNNNNRTG	2 cut(s)	226, 341
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	2 cut(s)	383, 489
MspR9I	CCNGG	1 cut(s)	657
MunI	CAATTG	1 cut(s)	550
MvaI	CCWGG	1 cut(s)	657
MvnI	CGCG	1 cut(s)	359
MwoI	GCNNNNNNNGC	1 cut(s)	555
NdeI	CATATG	1 cut(s)	682
NdeII	GATC	4 cut(s)	112, 201, 217, 319
NlaIII	CATG	6 cut(s)	35, 53, 73, 91, 208, 340
NlaIV	GGNNCC	2 cut(s)	487, 557
NmeAIII	GCCGAG	1 cut(s)	422
NmuCI	GTSAC	1 cut(s)	610
NspI	RCATGY	1 cut(s)	53
OliI	CACNNNNGTG	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	3 cut(s)	30, 407, 518
PpsI	GAGTC	3 cut(s)	30, 407, 518
Psp6I	CCWGG	1 cut(s)	655
PspGI	CCWGG	1 cut(s)	655
PspN4I	GGNNCC	2 cut(s)	487, 557
PspPI	GGNCC	1 cut(s)	556
PstI	CTGCAG	1 cut(s)	148
RseI	CAYNNNNRTG	2 cut(s)	226, 341
SaqAI	TTAA	4 cut(s)	179, 387, 426, 438
SatI	GCNGC	1 cut(s)	147
Sau3AI	GATC	4 cut(s)	112, 201, 217, 319
Sau96I	GGNCC	1 cut(s)	556
SchI	GAGTC	3 cut(s)	31, 408, 519
ScrFI	CCNGG	1 cut(s)	657
SduI	GDGCHC	1 cut(s)	292
SetI	ASST	6 cut(s)	59, 130, 151, 373, 438, 599
SfaNI	GCATC	2 cut(s)	34, 240
SfcI	CTRYAG	1 cut(s)	144
SmiMI	CAYNNNNRTG	2 cut(s)	226, 341
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	7 cut(s)	255, 268, 523, 550, 581, 661, 668
SsiI	CCGC	4 cut(s)	102, 186, 311, 501
SspMI	CTAG	1 cut(s)	137
StyD4I	CCNGG	1 cut(s)	655
TaqI	TCGA	2 cut(s)	198, 327
TasI	AATT	7 cut(s)	255, 268, 523, 550, 581, 661, 668
Tru1I	TTAA	4 cut(s)	179, 387, 426, 438
Tru9I	TTAA	4 cut(s)	179, 387, 426, 438
TscAI	CASTG	1 cut(s)	625
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	1 cut(s)	146
Tsp45I	GTSAC	1 cut(s)	610
TspRI	CASTG	1 cut(s)	625
XagI	CCTNNNNNAGG	1 cut(s)	240
XapI	RAATTY	1 cut(s)	268
XbaI	TCTAGA	1 cut(s)	136
XceI	RCATGY	1 cut(s)	53
XcmI	CCANNNNNNNNNTGG	1 cut(s)	128
XspI	CTAG	1 cut(s)	137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.