Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Reverse (-)

35746096 .. 35747124

Gene Structure 1029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47031.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTAAGTTTCATAACTTGTTCACGTTTGCAGTGTTGTTCATCAGCACTATTTCGGTGCATGCCATTGCCGAGAACTTCCTTTTTGGTCAGGAAAATGGCGGTTCTTGGGAGGATGGACACGCAACGTTTTACGGCGACATGGGCGGAGGAGAAACCATGCAGGGGGCTTGTGGATATGGTGATCTCTTCCAACAAGGCTATGGCTTCGAGACTGCAGCTCTAAGCACAGCACTGTTTAACAAAGGACAAACTTGTGGAGCTTGTTTTGAGATCATGTGTGTCAATGATCCACAATGGTGCATACCTAATGCTGGTACCATCAGAATCACTGCAACAAACTTTTGCCCCCCAAACTACGATCCACATTTTTATCCCTGGTGCAACCCCCCAAGAAAACACTTTGACTTGTCCATGCCTATGTTCACAAAACTTGCTCCATTCAAAGCTGGTATAATTCCGGTTAAGTTTCGCAGAGTTCCTTGTGCTAAAAGAGGTGGGATTAAGTTTGAGATCAAGGGAAATCCTCATTGGATTACTGCAACTCCTATCAATGTTGGTGGTGCTGGTGATGTTACAGCCCTTGCAGTTAAGGGTTCTAAATCCGGCCAGTGGGTTCCCATGAGTCGCAATTGGGGACAAGTTTGGCAGACCTCAGCCAACTTGGTTGGGCAAAGTCTATCATTCCATGTCACTACTAGTGATCGGAAGATGGTTGTGCTCTACAATGTTGCACCAGCAAACTGGCAATTTGATCAAACTTATGAAGGAAAAGCCAATATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

262

Amino Acids

28.7

Weight (kDa)

8.39

Isoelectric Point (pI)

31.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	51 - 163	5.2e-07	EXPB1-like domain 1
DPBB_1	PF03330	72 - 157	2.9e-20	Lytic transglycolase
Expansin_C	PF01357	168 - 246	1.2e-26	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	317
AccB1I	GGYRCC	1 cut(s)	317
AciI	CCGC	2 cut(s)	102, 147
AclI	AACGTT	1 cut(s)	128
AclWI	GGATC	2 cut(s)	284, 356
AcoI	YGGCCR	1 cut(s)	607
AfaI	GTAC	1 cut(s)	319
AfiI	CCNNNNNNNGG	3 cut(s)	165, 314, 612
AgsI	TTSAA	1 cut(s)	445
AhlI	ACTAGT	1 cut(s)	698
AjnI	CCWGG	1 cut(s)	377
AjuI	GAANNNNNNNTTGG	2 cut(s)	514, 546
AleI	CACNNNNGTG	1 cut(s)	298
AluBI	AGCT	3 cut(s)	221, 263, 449
AluI	AGCT	3 cut(s)	221, 263, 449
Alw21I	GWGCWC	1 cut(s)	723
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	2 cut(s)	284, 356
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	1 cut(s)	218
Asp718I	GGTACC	1 cut(s)	317
AsuHPI	GGTGA	2 cut(s)	194, 581
BanI	GGYRCC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	723
BbvCI	CCTCAGC	1 cut(s)	655
BbvI	GCAGC	1 cut(s)	230
BccI	CCATC	3 cut(s)	110, 329, 706
BceAI	ACGGC	1 cut(s)	151
BciT130I	CCWGG	1 cut(s)	379
BclI	TGATCA	1 cut(s)	754
BcoDI	GTCTC	1 cut(s)	206
BcuI	ACTAGT	1 cut(s)	698
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	219
BlsI	GCNGC	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	379
BmiI	GGNNCC	2 cut(s)	319, 618
BmrFI	CCNGG	1 cut(s)	379
Bpu10I	CCTNAGC	1 cut(s)	655
BsaJI	CCNNGG	1 cut(s)	377
BsaWI	WCCGGW	1 cut(s)	460
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 314, 612
Bse1I	ACTGG	2 cut(s)	610, 749
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	379
BseDI	CCNNGG	1 cut(s)	377
BseGI	GGATG	1 cut(s)	121
BseLI	CCNNNNNNNGG	3 cut(s)	165, 314, 612
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	1 cut(s)	669
BseNI	ACTGG	2 cut(s)	610, 749
BseRI	GAGGAG	1 cut(s)	165
BseXI	GCAGC	1 cut(s)	230
BshFI	GGCC	1 cut(s)	609
BshNI	GGYRCC	1 cut(s)	317
BsiHKAI	GWGCWC	1 cut(s)	723
BsiSI	CCGG	2 cut(s)	461, 606
BslFI	GGGAC	1 cut(s)	651
BslI	CCNNNNNNNGG	3 cut(s)	165, 314, 612
BsmAI	GTCTC	1 cut(s)	206
BsmFI	GGGAC	1 cut(s)	651
BsnI	GGCC	1 cut(s)	609
Bsp1286I	GDGCHC	1 cut(s)	723
Bsp143I	GATC	7 cut(s)	184, 273, 289, 361, 513, 703, 754
BspACI	CCGC	2 cut(s)	102, 147
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	668
BspLI	GGNNCC	2 cut(s)	319, 618
BspMAI	CTGCAG	1 cut(s)	220
BspPI	GGATC	2 cut(s)	284, 356
BspT107I	GGYRCC	1 cut(s)	317
BsrDI	GCAATG	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	610, 749
BssECI	CCNNGG	1 cut(s)	377
BssMI	GATC	7 cut(s)	184, 273, 289, 361, 513, 703, 754
Bst2UI	CCWGG	1 cut(s)	379
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	63
BstDEI	CTNAG	3 cut(s)	6, 224, 655
BstF5I	GGATG	1 cut(s)	121
BstKTI	GATC	7 cut(s)	187, 276, 292, 364, 516, 706, 757
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	7 cut(s)	184, 273, 289, 361, 513, 703, 754
BstMWI	GCNNNNNNNGC	1 cut(s)	144
BstNI	CCWGG	1 cut(s)	379
BstNSI	RCATGY	1 cut(s)	65
BstSCI	CCNGG	1 cut(s)	377
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	1 cut(s)	230
BstXI	CCANNNNNNTGG	1 cut(s)	744
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	1 cut(s)	121
BtsI	GCAGTG	2 cut(s)	39, 330
BtsIMutI	CAGTG	4 cut(s)	39, 233, 330, 617
Cac8I	GCNNGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	318
CspCI	CAANNNNNGTGG	2 cut(s)	541, 576
CviAII	CATG	7 cut(s)	62, 142, 160, 277, 415, 622, 689
CviQI	GTAC	1 cut(s)	318
DdeI	CTNAG	3 cut(s)	6, 224, 655
DpnI	GATC	7 cut(s)	186, 275, 291, 363, 515, 705, 756
DpnII	GATC	7 cut(s)	184, 273, 289, 361, 513, 703, 754
EaeI	YGGCCR	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	194
EarI	CTCTTC	1 cut(s)	194
EciI	GGCGGA	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	377
FaeI	CATG	7 cut(s)	65, 145, 163, 280, 418, 625, 692
FaqI	GGGAC	1 cut(s)	651
FatI	CATG	7 cut(s)	61, 141, 159, 276, 414, 621, 688
FbaI	TGATCA	1 cut(s)	754
Fnu4HI	GCNGC	1 cut(s)	219
FokI	GGATG	1 cut(s)	128
Fsp4HI	GCNGC	1 cut(s)	219
FspBI	CTAG	1 cut(s)	699
GluI	GCNGC	1 cut(s)	219
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	2 cut(s)	461, 606
Hin1II	CATG	7 cut(s)	65, 145, 163, 280, 418, 625, 692
HinfI	GANTC	2 cut(s)	327, 625
HpaII	CCGG	2 cut(s)	461, 606
HphI	GGTGA	2 cut(s)	194, 581
Hpy166II	GTNNAC	2 cut(s)	24, 426
Hpy188I	TCNGA	2 cut(s)	326, 708
Hpy188III	TCNNGA	2 cut(s)	92, 211
Hpy8I	GTNNAC	2 cut(s)	24, 426
HpyAV	CCTTC	1 cut(s)	761
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	2 cut(s)	26, 128
HpyF10VI	GCNNNNNNNGC	1 cut(s)	144
HpyF3I	CTNAG	3 cut(s)	6, 224, 655
HpySE526I	ACGT	2 cut(s)	26, 128
Hsp92II	CATG	7 cut(s)	65, 145, 163, 280, 418, 625, 692
KpnI	GGTACC	1 cut(s)	321
Ksp22I	TGATCA	1 cut(s)	754
Kzo9I	GATC	7 cut(s)	184, 273, 289, 361, 513, 703, 754
LmnI	GCTCC	2 cut(s)	260, 442
Lsp1109I	GCAGC	1 cut(s)	230
MaeI	CTAG	1 cut(s)	699
MaeII	ACGT	2 cut(s)	26, 128
MaeIII	GTNAC	2 cut(s)	574, 691
MalI	GATC	7 cut(s)	186, 275, 291, 363, 515, 705, 756
MboI	GATC	7 cut(s)	184, 273, 289, 361, 513, 703, 754
MboII	GAAGA	2 cut(s)	181, 721
MfeI	CAATTG	1 cut(s)	631
MhlI	GDGCHC	1 cut(s)	723
MluCI	AATT	3 cut(s)	456, 631, 749
MlyI	GAGTC	1 cut(s)	634
MmeI	TCCRAC	1 cut(s)	217
MnlI	CCTC	5 cut(s)	106, 143, 488, 537, 664
MseI	TTAA	4 cut(s)	240, 465, 504, 591
MslI	CAYNNNNRTG	2 cut(s)	298, 419
MspI	CCGG	2 cut(s)	461, 606
MspR9I	CCNGG	1 cut(s)	379
MunI	CAATTG	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	379
MwoI	GCNNNNNNNGC	1 cut(s)	144
NdeII	GATC	7 cut(s)	184, 273, 289, 361, 513, 703, 754
NlaIII	CATG	7 cut(s)	65, 145, 163, 280, 418, 625, 692
NlaIV	GGNNCC	2 cut(s)	319, 618
NmeAIII	GCCGAG	1 cut(s)	97
NmuCI	GTSAC	1 cut(s)	691
NspI	RCATGY	1 cut(s)	65
OliI	CACNNNNGTG	1 cut(s)	298
PaeI	GCATGC	1 cut(s)	65
PfeI	GAWTC	1 cut(s)	327
PkrI	GCNGC	1 cut(s)	220
PleI	GAGTC	1 cut(s)	633
PpsI	GAGTC	1 cut(s)	633
Psp1406I	AACGTT	1 cut(s)	128
Psp6I	CCWGG	1 cut(s)	377
PspGI	CCWGG	1 cut(s)	377
PspN4I	GGNNCC	2 cut(s)	319, 618
PstI	CTGCAG	1 cut(s)	220
RsaI	GTAC	1 cut(s)	319
RsaNI	GTAC	1 cut(s)	318
RseI	CAYNNNNRTG	2 cut(s)	298, 419
SaqAI	TTAA	4 cut(s)	240, 465, 504, 591
SatI	GCNGC	1 cut(s)	219
Sau3AI	GATC	7 cut(s)	184, 273, 289, 361, 513, 703, 754
SchI	GAGTC	1 cut(s)	634
ScrFI	CCNGG	1 cut(s)	379
SduI	GDGCHC	1 cut(s)	723
SetI	ASST	8 cut(s)	29, 131, 223, 265, 310, 451, 499, 656
SfcI	CTRYAG	1 cut(s)	216
SmiMI	CAYNNNNRTG	2 cut(s)	298, 419
SpeI	ACTAGT	1 cut(s)	698
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	3 cut(s)	456, 631, 749
SsiI	CCGC	2 cut(s)	102, 147
SspI	AATATT	1 cut(s)	781
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	1 cut(s)	377
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	2 cut(s)	29, 131
TaqI	TCGA	1 cut(s)	210
TasI	AATT	3 cut(s)	456, 631, 749
TfiI	GAWTC	1 cut(s)	327
Tru1I	TTAA	4 cut(s)	240, 465, 504, 591
Tru9I	TTAA	4 cut(s)	240, 465, 504, 591
TscAI	CASTG	4 cut(s)	39, 240, 337, 617
TseFI	GTSAC	1 cut(s)	691
TseI	GCWGC	1 cut(s)	218
Tsp45I	GTSAC	1 cut(s)	691
TspDTI	ATGAA	2 cut(s)	31, 780
TspRI	CASTG	4 cut(s)	39, 240, 337, 617
XceI	RCATGY	1 cut(s)	65
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.