Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Forward (+)

3469268 .. 3469922

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g05410.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGGCTTTATAATCCCGACCGGCGGAAGAGACGACAATGTTTGGCAAGACGCACATGCAACGTTTTACGGTGACATGAGTGGAGGAGAAACCATGTCGCTAAGCACGGCCCTCGTCAACGATGGGGGTACTTTAGGTGCTTGTTTCCGGCTCGGGTGCGTCCATGATCCCCAATGGTGCAACCCTCACGTCAGGGCCATCACAATTACCGTAACCAACATTTGTCCACCAAATTGGGCTCCGGCTCCTGATCACTGGTGCAATCCACCCCAAAAGTACTTCGACAGTACATGGCTATGCTCGCAAAACTCGTACACTCAAAAGCCGGTATCAATCCAGTTAAGTACCGGACCGCTATCAATCCAGTTAAGTACCGGAGAGTCTCGTGCCGGAAGAGTGGAGGGGTTAAGTTCGAGGGGCAACCCCTGGTGGGTTACAGCGACAGCGTTCAATATTGGCGGTGCTAGCGATGTTACGAACGTCAGAATCAAGGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

166

Amino Acids

17.78

Weight (kDa)

6.01

Isoelectric Point (pI)

32.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	11
AciI	CCGC	3 cut(s)	24, 353, 459
AclI	AACGTT	1 cut(s)	62
AclWI	GGATC	1 cut(s)	161
AfaI	GTAC	6 cut(s)	130, 278, 289, 314, 346, 373
AfiI	CCNNNNNNNGG	2 cut(s)	23, 430
AgsI	TTSAA	1 cut(s)	451
AjiI	CACGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	425
Alw26I	GTCTC	2 cut(s)	24, 387
AlwI	GGATC	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	2 cut(s)	108, 195
AspS9I	GGNCC	3 cut(s)	109, 195, 350
AsuHPI	GGTGA	1 cut(s)	83
AsuNHI	GCTAGC	1 cut(s)	464
AvaI	CYCGRG	1 cut(s)	152
AvaII	GGWCC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	241
BauI	CACGAG	1 cut(s)	384
BccI	CCATC	2 cut(s)	116, 206
BceAI	ACGGC	1 cut(s)	123
BcgI	CGANNNNNNTGC	2 cut(s)	94, 128
BciT130I	CCWGG	1 cut(s)	427
BclI	TGATCA	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	24, 387
BfaI	CTAG	1 cut(s)	465
BlpI	GCTNAGC	1 cut(s)	101
BmcAI	AGTACT	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	427
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	152
BmgBI	CACGTC	1 cut(s)	190
BmgT120I	GGNCC	3 cut(s)	109, 195, 350
BmiI	GGNNCC	2 cut(s)	240, 246
BmrFI	CCNGG	1 cut(s)	427
BmtI	GCTAGC	1 cut(s)	468
Bpu1102I	GCTNAGC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	425
BsaWI	WCCGGW	2 cut(s)	347, 374
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 430
Bse118I	RCCGGY	2 cut(s)	20, 325
Bse1I	ACTGG	3 cut(s)	260, 337, 364
BseBI	CCWGG	1 cut(s)	427
BseDI	CCNNGG	1 cut(s)	425
BseLI	CCNNNNNNNGG	2 cut(s)	23, 430
BseNI	ACTGG	3 cut(s)	260, 337, 364
BseRI	GAGGAG	1 cut(s)	99
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	110, 197
BsiEI	CGRYCG	1 cut(s)	21
BsiHKCI	CYCGRG	1 cut(s)	152
BsiSI	CCGG	7 cut(s)	21, 148, 242, 326, 348, 375, 390
BslI	CCNNNNNNNGG	2 cut(s)	23, 430
BsmAI	GTCTC	2 cut(s)	24, 387
BsmBI	CGTCTC	1 cut(s)	24
BsnI	GGCC	2 cut(s)	110, 197
BsoBI	CYCGRG	1 cut(s)	152
Bsp1286I	GDGCHC	1 cut(s)	241
Bsp143I	GATC	2 cut(s)	166, 250
Bsp1720I	GCTNAGC	1 cut(s)	101
BspACI	CCGC	3 cut(s)	24, 353, 459
BspANI	GGCC	2 cut(s)	110, 197
BspLI	GGNNCC	2 cut(s)	240, 246
BspOI	GCTAGC	1 cut(s)	468
BspPI	GGATC	1 cut(s)	161
BsrFI	RCCGGY	2 cut(s)	20, 325
BsrI	ACTGG	3 cut(s)	260, 337, 364
BssAI	RCCGGY	2 cut(s)	20, 325
BssECI	CCNNGG	1 cut(s)	425
BssMI	GATC	2 cut(s)	166, 250
BssSI	CACGAG	1 cut(s)	384
Bst2BI	CACGAG	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	427
Bst4CI	ACNGT	3 cut(s)	71, 211, 287
Bst6I	CTCTTC	2 cut(s)	22, 388
BstC8I	GCNNGC	2 cut(s)	302, 466
BstDEI	CTNAG	1 cut(s)	101
BstKTI	GATC	2 cut(s)	169, 253
BstMAI	GTCTC	2 cut(s)	24, 387
BstMBI	GATC	2 cut(s)	166, 250
BstMCI	CGRYCG	1 cut(s)	21
BstMWI	GCNNNNNNNGC	2 cut(s)	301, 465
BstNI	CCWGG	1 cut(s)	427
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	425
BstXI	CCANNNNNNTGG	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	110, 197
BtgZI	GCGATG	1 cut(s)	483
BtrI	CACGTC	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	2 cut(s)	302, 466
Cfr10I	RCCGGY	2 cut(s)	20, 325
Cfr13I	GGNCC	3 cut(s)	109, 195, 350
CpoI	CGGWCCG	1 cut(s)	350
CseI	GACGC	2 cut(s)	59, 148
Csp6I	GTAC	6 cut(s)	129, 277, 288, 313, 345, 372
CspI	CGGWCCG	1 cut(s)	350
CviAII	CATG	5 cut(s)	56, 76, 94, 164, 291
CviJI	RGCY	8 cut(s)	6, 110, 151, 197, 239, 245, 295, 325
CviKI_1	RGCY	8 cut(s)	6, 110, 151, 197, 239, 245, 295, 325
CviQI	GTAC	6 cut(s)	129, 277, 288, 313, 345, 372
DdeI	CTNAG	1 cut(s)	101
DpnI	GATC	2 cut(s)	168, 252
DpnII	GATC	2 cut(s)	166, 250
Eam1104I	CTCTTC	2 cut(s)	22, 388
EarI	CTCTTC	2 cut(s)	22, 388
EciI	GGCGGA	1 cut(s)	39
Eco24I	GRGCYC	1 cut(s)	241
Eco47I	GGWCC	1 cut(s)	350
Eco88I	CYCGRG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	425
EcoT38I	GRGCYC	1 cut(s)	241
Esp3I	CGTCTC	1 cut(s)	24
FaeI	CATG	5 cut(s)	59, 79, 97, 167, 294
FaiI	YATR	7 cut(s)	11, 57, 77, 95, 165, 292, 298
FatI	CATG	5 cut(s)	55, 75, 93, 163, 290
FbaI	TGATCA	1 cut(s)	250
FriOI	GRGCYC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	465
HaeIII	GGCC	2 cut(s)	110, 197
HapII	CCGG	7 cut(s)	21, 148, 242, 326, 348, 375, 390
HgaI	GACGC	2 cut(s)	59, 148
Hin1II	CATG	5 cut(s)	59, 79, 97, 167, 294
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	380, 486
HpaII	CCGG	7 cut(s)	21, 148, 242, 326, 348, 375, 390
HphI	GGTGA	1 cut(s)	83
Hpy166II	GTNNAC	3 cut(s)	118, 227, 315
Hpy188I	TCNGA	1 cut(s)	485
Hpy188III	TCNNGA	2 cut(s)	16, 248
Hpy8I	GTNNAC	3 cut(s)	118, 227, 315
HpyCH4III	ACNGT	3 cut(s)	71, 211, 287
HpyCH4IV	ACGT	3 cut(s)	62, 189, 480
HpyCH4V	TGCA	3 cut(s)	59, 180, 261
HpyF10VI	GCNNNNNNNGC	2 cut(s)	301, 465
HpyF3I	CTNAG	1 cut(s)	101
HpySE526I	ACGT	3 cut(s)	62, 189, 480
Hsp92II	CATG	5 cut(s)	59, 79, 97, 167, 294
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	2 cut(s)	166, 250
LmnI	GCTCC	2 cut(s)	244, 250
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	3 cut(s)	62, 189, 480
MaeIII	GTNAC	4 cut(s)	71, 211, 433, 472
MalI	GATC	2 cut(s)	168, 252
MboI	GATC	2 cut(s)	166, 250
MboII	GAAGA	2 cut(s)	39, 405
MhlI	GDGCHC	1 cut(s)	241
MluCI	AATT	2 cut(s)	204, 232
MlyI	GAGTC	1 cut(s)	389
MnlI	CCTC	5 cut(s)	77, 122, 195, 394, 408
MseI	TTAA	3 cut(s)	341, 368, 407
MslI	CAYNNNNRTG	1 cut(s)	295
MspI	CCGG	7 cut(s)	21, 148, 242, 326, 348, 375, 390
MspR9I	CCNGG	1 cut(s)	427
MvaI	CCWGG	1 cut(s)	427
MwoI	GCNNNNNNNGC	2 cut(s)	301, 465
NdeII	GATC	2 cut(s)	166, 250
NheI	GCTAGC	1 cut(s)	464
NlaIII	CATG	5 cut(s)	59, 79, 97, 167, 294
NlaIV	GGNNCC	2 cut(s)	240, 246
NmuCI	GTSAC	1 cut(s)	71
NspI	RCATGY	1 cut(s)	59
PcsI	WCGNNNNNNNCGW	1 cut(s)	308
PfeI	GAWTC	1 cut(s)	486
PleI	GAGTC	1 cut(s)	388
PpsI	GAGTC	1 cut(s)	388
PsiI	TTATAA	1 cut(s)	11
Psp1406I	AACGTT	1 cut(s)	62
Psp6I	CCWGG	1 cut(s)	425
PspGI	CCWGG	1 cut(s)	425
PspN4I	GGNNCC	2 cut(s)	240, 246
PspPI	GGNCC	3 cut(s)	109, 195, 350
RsaI	GTAC	6 cut(s)	130, 278, 289, 314, 346, 373
RsaNI	GTAC	6 cut(s)	129, 277, 288, 313, 345, 372
RseI	CAYNNNNRTG	1 cut(s)	295
Rsr2I	CGGWCCG	1 cut(s)	350
RsrII	CGGWCCG	1 cut(s)	350
SaqAI	TTAA	3 cut(s)	341, 368, 407
Sau3AI	GATC	2 cut(s)	166, 250
Sau96I	GGNCC	3 cut(s)	109, 195, 350
ScaI	AGTACT	1 cut(s)	278
SchI	GAGTC	1 cut(s)	389
ScrFI	CCNGG	1 cut(s)	427
SduI	GDGCHC	1 cut(s)	241
SetI	ASST	4 cut(s)	65, 139, 192, 483
SinI	GGWCC	1 cut(s)	350
SmiMI	CAYNNNNRTG	1 cut(s)	295
Sse9I	AATT	2 cut(s)	204, 232
SsiI	CCGC	3 cut(s)	24, 353, 459
SspI	AATATT	1 cut(s)	454
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	425
TaaI	ACNGT	3 cut(s)	71, 211, 287
TaiI	ACGT	3 cut(s)	65, 192, 483
TaqI	TCGA	2 cut(s)	282, 413
TasI	AATT	2 cut(s)	204, 232
TatI	WGTACW	2 cut(s)	276, 287
TfiI	GAWTC	1 cut(s)	486
Tru1I	TTAA	3 cut(s)	341, 368, 407
Tru9I	TTAA	3 cut(s)	341, 368, 407
TscAI	CASTG	1 cut(s)	260
TseFI	GTSAC	1 cut(s)	71
Tsp45I	GTSAC	1 cut(s)	71
TspRI	CASTG	1 cut(s)	260
VpaK11BI	GGWCC	1 cut(s)	350
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	1 cut(s)	465
ZrmI	AGTACT	1 cut(s)	278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.