Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Forward (+)

70295086 .. 70295974

Gene Structure 889 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000035690

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGAGTAAGTTCCAGAACTTGTTCGGAGCGGCGACAGTGTTCATCATCATTCTTTCGGTCCAAACCATGAGCAATCCAATCGGCGAGAGTCCTGACCATGACTGGCACGATGGACATGCAACCTTCTATGGCGACATGAATGGAAGCGAAACCATGCAGGGGGCTTGCGGATATGGTGATCTCTTCCAACAAGGTTATGGTCTAGATACAGCAGCTCTAAGCACAACATTGTTCAACAATGGATTAACTTGCGGTGCTTGTTTCGAGATCATGTGCGTCCATGATCCACAATGGTGCATCCCTAATGCAGGCACGATCAAAATTACTGCAACAAATTTTTGTCCACCAAACTGGGCTCAAGGAGGATGGTGCAATCCGCCATACGATCACTTCGACTTGTCCATGCCTATGTTCACAAAAATCGCGCAATACAAAGCTGGAATAGTTCCGGTCAAGTTTCGCCGAGTCCCGTGTGCTAAAACAGGAGGGGTTAAGTTTGAGCTTAAAGGAAATCCCTACTGGATTACTGCTTTGGTTTACAATGTGGGTGGTGCCGGTGATGTTAACGCTGTCAAAATCAAAGGATCTAATTCCGGTTGGCTTCAAATGTCGCCCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

207

Amino Acids

22.36

Weight (kDa)

6.16

Isoelectric Point (pI)

32.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	41 - 158	1.6e-06	EXPB1-like domain 1
DPBB_1	PF03330	70 - 153	7.2e-21	Lytic transglycolase
Expansin_C	PF01357	164 - 205	9e-10	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	551
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	425
AciI	CCGC	4 cut(s)	29, 168, 252, 377
AclWI	GGATC	2 cut(s)	278, 592
AcsI	RAATTY	1 cut(s)	334
AfiI	CCNNNNNNNGG	2 cut(s)	159, 308
AgsI	TTSAA	2 cut(s)	235, 605
AleI	CACNNNNGTG	1 cut(s)	292
AluBI	AGCT	3 cut(s)	215, 437, 502
AluI	AGCT	3 cut(s)	215, 437, 502
AlwI	GGATC	2 cut(s)	278, 592
ApeKI	GCWGC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	334
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	188, 569
AvaII	GGWCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	551
BanII	GRGCYC	1 cut(s)	358
BbvI	GCAGC	1 cut(s)	224
BccI	CCATC	2 cut(s)	104, 360
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 98, 132
BfaI	CTAG	1 cut(s)	203
BisI	GCNGC	2 cut(s)	30, 213
BlsI	GCNGC	2 cut(s)	31, 214
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	1 cut(s)	58
BmiI	GGNNCC	1 cut(s)	553
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	306
BmuI	ACTGGG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	342
BsaWI	WCCGGW	2 cut(s)	448, 593
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 308
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	3 cut(s)	107, 356, 524
BseGI	GGATG	2 cut(s)	297, 371
BseLI	CCNNNNNNNGG	2 cut(s)	159, 308
BseNI	ACTGG	3 cut(s)	107, 356, 524
BseXI	GCAGC	1 cut(s)	224
Bsh1236I	CGCG	1 cut(s)	425
BshNI	GGYRCC	1 cut(s)	551
BsiSI	CCGG	3 cut(s)	449, 555, 594
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	2 cut(s)	159, 308
BsmFI	GGGAC	1 cut(s)	452
Bsp1286I	GDGCHC	1 cut(s)	358
Bsp143I	GATC	6 cut(s)	178, 267, 283, 315, 385, 584
BspACI	CCGC	4 cut(s)	29, 168, 252, 377
BspFNI	CGCG	1 cut(s)	425
BspLI	GGNNCC	1 cut(s)	553
BspPI	GGATC	2 cut(s)	278, 592
BspT107I	GGYRCC	1 cut(s)	551
BsrBI	CCGCTC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	3 cut(s)	107, 356, 524
BssAI	RCCGGY	1 cut(s)	554
BssMI	GATC	6 cut(s)	178, 267, 283, 315, 385, 584
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	2 cut(s)	166, 310
BstDEI	CTNAG	1 cut(s)	218
BstENI	CCTNNNNNAGG	1 cut(s)	306
BstF5I	GGATG	2 cut(s)	297, 371
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	6 cut(s)	181, 270, 286, 318, 388, 587
BstMBI	GATC	6 cut(s)	178, 267, 283, 315, 385, 584
BstNSI	RCATGY	1 cut(s)	119
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	1 cut(s)	224
BstX2I	RGATCY	1 cut(s)	584
BstXI	CCANNNNNNTGG	1 cut(s)	351
BstYI	RGATCY	1 cut(s)	584
BtsCI	GGATG	2 cut(s)	297, 371
BtsIMutI	CAGTG	1 cut(s)	42
Cac8I	GCNNGC	2 cut(s)	166, 310
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	1 cut(s)	58
CseI	GACGC	1 cut(s)	265
CspCI	CAANNNNNGTGG	2 cut(s)	529, 564
CviAII	CATG	8 cut(s)	67, 98, 116, 136, 154, 271, 281, 403
CviJI	RGCY	6 cut(s)	164, 215, 356, 437, 502, 601
CviKI_1	RGCY	6 cut(s)	164, 215, 356, 437, 502, 601
DdeI	CTNAG	1 cut(s)	218
DpnI	GATC	6 cut(s)	180, 269, 285, 317, 387, 586
DpnII	GATC	6 cut(s)	178, 267, 283, 315, 385, 584
Eam1104I	CTCTTC	1 cut(s)	188
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	1 cut(s)	366
Eco24I	GRGCYC	1 cut(s)	358
Eco47I	GGWCC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	306
EcoT38I	GRGCYC	1 cut(s)	358
FaeI	CATG	8 cut(s)	70, 101, 119, 139, 157, 274, 284, 406
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	8 cut(s)	66, 97, 115, 135, 153, 270, 280, 402
Fnu4HI	GCNGC	2 cut(s)	30, 213
FokI	GGATG	2 cut(s)	284, 378
FriOI	GRGCYC	1 cut(s)	358
Fsp4HI	GCNGC	2 cut(s)	30, 213
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	2 cut(s)	30, 213
HapII	CCGG	3 cut(s)	449, 555, 594
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	8 cut(s)	70, 101, 119, 139, 157, 274, 284, 406
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HincII	GTYRAC	1 cut(s)	565
HindII	GTYRAC	1 cut(s)	565
HinfI	GANTC	2 cut(s)	88, 465
HpaI	GTTAAC	1 cut(s)	565
HpaII	CCGG	3 cut(s)	449, 555, 594
HphI	GGTGA	2 cut(s)	188, 569
Hpy166II	GTNNAC	4 cut(s)	344, 414, 538, 565
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	4 cut(s)	13, 92, 203, 265
Hpy8I	GTNNAC	4 cut(s)	344, 414, 538, 565
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	6 cut(s)	119, 157, 297, 308, 329, 372
HpyF3I	CTNAG	1 cut(s)	218
Hsp92II	CATG	8 cut(s)	70, 101, 119, 139, 157, 274, 284, 406
HspAI	GCGC	1 cut(s)	425
KspAI	GTTAAC	1 cut(s)	565
Kzo9I	GATC	6 cut(s)	178, 267, 283, 315, 385, 584
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	224
LweI	GCATC	1 cut(s)	306
MaeI	CTAG	1 cut(s)	203
MalI	GATC	6 cut(s)	180, 269, 285, 317, 387, 586
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	6 cut(s)	178, 267, 283, 315, 385, 584
MboII	GAAGA	1 cut(s)	175
MflI	RGATCY	1 cut(s)	584
MhlI	GDGCHC	1 cut(s)	358
MluCI	AATT	4 cut(s)	321, 334, 589, 616
MlyI	GAGTC	2 cut(s)	97, 474
MmeI	TCCRAC	1 cut(s)	211
MnlI	CCTC	2 cut(s)	356, 479
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	4 cut(s)	245, 492, 504, 564
MslI	CAYNNNNRTG	2 cut(s)	292, 407
MspI	CCGG	3 cut(s)	449, 555, 594
MvnI	CGCG	1 cut(s)	425
NdeII	GATC	6 cut(s)	178, 267, 283, 315, 385, 584
NlaIII	CATG	8 cut(s)	70, 101, 119, 139, 157, 274, 284, 406
NlaIV	GGNNCC	1 cut(s)	553
NmeAIII	GCCGAG	1 cut(s)	488
NspI	RCATGY	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	390
PdmI	GAANNNNTTC	1 cut(s)	20
PkrI	GCNGC	2 cut(s)	31, 214
PleI	GAGTC	2 cut(s)	96, 473
PpsI	GAGTC	2 cut(s)	96, 473
PspN4I	GGNNCC	1 cut(s)	553
PspPI	GGNCC	1 cut(s)	58
PsuI	RGATCY	1 cut(s)	584
RseI	CAYNNNNRTG	2 cut(s)	292, 407
SaqAI	TTAA	4 cut(s)	245, 492, 504, 564
SatI	GCNGC	2 cut(s)	30, 213
Sau3AI	GATC	6 cut(s)	178, 267, 283, 315, 385, 584
Sau96I	GGNCC	1 cut(s)	58
SchI	GAGTC	2 cut(s)	97, 474
SduI	GDGCHC	1 cut(s)	358
SetI	ASST	5 cut(s)	125, 196, 217, 439, 504
SfaNI	GCATC	1 cut(s)	306
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	2 cut(s)	292, 407
SmlI	CTYRAG	1 cut(s)	357
SmoI	CTYRAG	1 cut(s)	357
Sse9I	AATT	4 cut(s)	321, 334, 589, 616
SsiI	CCGC	4 cut(s)	29, 168, 252, 377
SspMI	CTAG	1 cut(s)	203
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	264, 393
TaqII	GACCGA	1 cut(s)	46
TasI	AATT	4 cut(s)	321, 334, 589, 616
TauI	GCSGC	1 cut(s)	32
Tru1I	TTAA	4 cut(s)	245, 492, 504, 564
Tru9I	TTAA	4 cut(s)	245, 492, 504, 564
TscAI	CASTG	1 cut(s)	42
TseI	GCWGC	1 cut(s)	212
TspDTI	ATGAA	2 cut(s)	31, 152
TspRI	CASTG	1 cut(s)	42
VpaK11BI	GGWCC	1 cut(s)	58
XagI	CCTNNNNNAGG	1 cut(s)	306
XapI	RAATTY	1 cut(s)	334
XbaI	TCTAGA	1 cut(s)	202
XceI	RCATGY	1 cut(s)	119
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.