Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Reverse (-)

35743973 .. 35745101

Gene Structure 1129 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGCCAAGTTTCAGGTCTTGTTTGGATTGGTAGTGTTCATCACTCTTTCCGTTCAAGCCATGAGCCGCGATTGGCAACATGCAAGTGCAACGTTTTACGGCGACATGCAGGGAGGAGAAACCATGCAGGGAGCTTGTGGATATGGTGATCTCTTCCAACAAGGTTATGGTCTGGAGACTGCAGCTCTAAGTACACAACTGTTCAACGATGGACATTCTTGTGGTGCTTGTTTTGAGATCATGTGTGTCAATGATCCACAGTGGTGCAAAGCCAATGCAGTCATCAAAGTCACAGCAACAAATTTCTGTCCACCGAATTGGGTTCCAGCTCCTGATCATTGGTGCAACCCTCCACGCAAACACTTCGACTTGTCCATGGCTATGTTCACAAAACTCGCAGAATCCAGAGCCGGGATCATTCCGATTCAATATCGCCGAATCCCATGTGTAAGACAGGGAGGGATTAAGTTTGAGCTTAAGGGGAACCCCTACTGGACTACTGTTGTGGTTTATAATGTTGCTGGTAATGGCATTGTTAACCACGTTGCAATTAAGGGGTCTAACTCTGGTTGGATTCCAATGAAGCGCATTTGGGGAGAAGTTTGGCAGACTAATGTACAACTAGTCGGGGAAAGCTTATCGTTCCGAGTCTCTGCTGGAGAAGGGGATGTGCTTTGGTTAGAAAATGTTGCACCAGCGAATTGGCAATTCGGTCAAACCTACGAGGGGCATGGAAATTTTAGGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

250

Amino Acids

27.64

Weight (kDa)

6.98

Isoelectric Point (pI)

17.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXPB1_D1	PF22514	28 - 149	2.2e-07	EXPB1-like domain 1
DPBB_1	PF03330	60 - 144	6.8e-22	Lytic transglycolase
Expansin_C	PF01357	155 - 232	1.7e-21	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccII	CGCG	1 cut(s)	69
AciI	CCGC	1 cut(s)	67
AclI	AACGTT	1 cut(s)	92
AclWI	GGATC	2 cut(s)	248, 422
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	2 cut(s)	301, 736
AfaI	GTAC	2 cut(s)	193, 618
AfiI	CCNNNNNNNGG	2 cut(s)	411, 726
AflII	CTTAAG	1 cut(s)	476
AgsI	TTSAA	3 cut(s)	56, 205, 428
AhlI	ACTAGT	1 cut(s)	622
AleI	CACNNNNGTG	1 cut(s)	262
AluBI	AGCT	5 cut(s)	134, 185, 329, 475, 636
AluI	AGCT	5 cut(s)	134, 185, 329, 475, 636
Alw26I	GTCTC	2 cut(s)	170, 655
AlwI	GGATC	2 cut(s)	248, 422
AlwNI	CAGNNNCTG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	3
ApeKI	GCWGC	1 cut(s)	182
ApoI	RAATTY	2 cut(s)	301, 736
AspLEI	GCGC	1 cut(s)	588
AsuC2I	CCSGG	1 cut(s)	412
AsuHPI	GGTGA	1 cut(s)	158
BalI	TGGCCA	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	194
BccI	CCATC	1 cut(s)	203
BceAI	ACGGC	1 cut(s)	115
BcgI	CGANNNNNNTGC	2 cut(s)	346, 380
BclI	TGATCA	1 cut(s)	334
BcnI	CCSGG	1 cut(s)	412
BcoDI	GTCTC	2 cut(s)	170, 655
BcuI	ACTAGT	1 cut(s)	622
BfaI	CTAG	1 cut(s)	623
BfmI	CTRYAG	1 cut(s)	180
BfrI	CTTAAG	1 cut(s)	476
BisI	GCNGC	2 cut(s)	67, 183
BlsI	GCNGC	2 cut(s)	68, 184
Bme1390I	CCNGG	1 cut(s)	412
BmiI	GGNNCC	2 cut(s)	324, 485
BmrFI	CCNGG	1 cut(s)	412
BpmI	CTGGAG	2 cut(s)	194, 678
BpuMI	CCSGG	1 cut(s)	412
BsaJI	CCNNGG	1 cut(s)	375
Bsc4I	CCNNNNNNNGG	2 cut(s)	411, 726
Bse1I	ACTGG	1 cut(s)	497
BseDI	CCNNGG	1 cut(s)	375
BseGI	GGATG	1 cut(s)	673
BseLI	CCNNNNNNNGG	2 cut(s)	411, 726
BseNI	ACTGG	1 cut(s)	497
BseRI	GAGGAG	1 cut(s)	129
BseXI	GCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	69
BshFI	GGCC	1 cut(s)	5
BsiSI	CCGG	1 cut(s)	411
BslI	CCNNNNNNNGG	2 cut(s)	411, 726
BsmAI	GTCTC	2 cut(s)	170, 655
BsnI	GGCC	1 cut(s)	5
Bsp1407I	TGTACA	1 cut(s)	616
Bsp143I	GATC	5 cut(s)	148, 237, 253, 334, 414
Bsp19I	CCATGG	1 cut(s)	375
BspACI	CCGC	1 cut(s)	67
BspANI	GGCC	1 cut(s)	5
BspFNI	CGCG	1 cut(s)	69
BspLI	GGNNCC	2 cut(s)	324, 485
BspMAI	CTGCAG	1 cut(s)	184
BspPI	GGATC	2 cut(s)	248, 422
BspTI	CTTAAG	1 cut(s)	476
BsrGI	TGTACA	1 cut(s)	616
BsrI	ACTGG	1 cut(s)	497
BssECI	CCNNGG	1 cut(s)	375
BssMI	GATC	5 cut(s)	148, 237, 253, 334, 414
BssT1I	CCWWGG	1 cut(s)	375
Bst4CI	ACNGT	3 cut(s)	201, 261, 502
Bst6I	CTCTTC	1 cut(s)	158
BstAFI	CTTAAG	1 cut(s)	476
BstAUI	TGTACA	1 cut(s)	616
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	375
BstF5I	GGATG	1 cut(s)	673
BstFNI	CGCG	1 cut(s)	69
BstHHI	GCGC	1 cut(s)	588
BstKTI	GATC	5 cut(s)	151, 240, 256, 337, 417
BstMAI	GTCTC	2 cut(s)	170, 655
BstMBI	GATC	5 cut(s)	148, 237, 253, 334, 414
BstNSI	RCATGY	2 cut(s)	83, 109
BstSCI	CCNGG	1 cut(s)	410
BstSFI	CTRYAG	1 cut(s)	180
BstUI	CGCG	1 cut(s)	69
BstV1I	GCAGC	1 cut(s)	194
BstXI	CCANNNNNNTGG	2 cut(s)	318, 702
BsuRI	GGCC	1 cut(s)	5
BtgI	CCRYGG	1 cut(s)	375
BtsCI	GGATG	1 cut(s)	673
BtsIMutI	CAGTG	1 cut(s)	266
CaiI	CAGNNNCTG	1 cut(s)	332
CfoI	GCGC	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	192, 617
CviAII	CATG	9 cut(s)	61, 80, 106, 124, 241, 376, 444, 731, 747
CviQI	GTAC	2 cut(s)	192, 617
DdeI	CTNAG	1 cut(s)	188
DpnI	GATC	5 cut(s)	150, 239, 255, 336, 416
DpnII	GATC	5 cut(s)	148, 237, 253, 334, 414
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	158
EarI	CTCTTC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	375
ErhI	CCWWGG	1 cut(s)	375
FaeI	CATG	9 cut(s)	64, 83, 109, 127, 244, 379, 447, 734, 750
FatI	CATG	9 cut(s)	60, 79, 105, 123, 240, 375, 443, 730, 746
FbaI	TGATCA	1 cut(s)	334
Fnu4HI	GCNGC	2 cut(s)	67, 183
FokI	GGATG	1 cut(s)	680
Fsp4HI	GCNGC	2 cut(s)	67, 183
FspBI	CTAG	1 cut(s)	623
GlaI	GCGC	1 cut(s)	587
GluI	GCNGC	2 cut(s)	67, 183
GsuI	CTGGAG	2 cut(s)	194, 678
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	411
HhaI	GCGC	1 cut(s)	588
Hin1II	CATG	9 cut(s)	64, 83, 109, 127, 244, 379, 447, 734, 750
Hin6I	GCGC	1 cut(s)	586
HinP1I	GCGC	1 cut(s)	586
HincII	GTYRAC	1 cut(s)	538
HindII	GTYRAC	1 cut(s)	538
HindIII	AAGCTT	1 cut(s)	634
HinfI	GANTC	5 cut(s)	401, 424, 438, 574, 648
HpaI	GTTAAC	1 cut(s)	538
HpaII	CCGG	1 cut(s)	411
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	4 cut(s)	194, 311, 387, 538
Hpy188I	TCNGA	2 cut(s)	423, 647
Hpy188III	TCNNGA	3 cut(s)	173, 332, 405
Hpy8I	GTNNAC	4 cut(s)	194, 311, 387, 538
HpyAV	CCTTC	1 cut(s)	656
HpyCH4III	ACNGT	3 cut(s)	201, 261, 502
HpyCH4IV	ACGT	2 cut(s)	92, 543
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	2 cut(s)	92, 543
Hsp92II	CATG	9 cut(s)	64, 83, 109, 127, 244, 379, 447, 734, 750
HspAI	GCGC	1 cut(s)	586
Ksp22I	TGATCA	1 cut(s)	334
KspAI	GTTAAC	1 cut(s)	538
Kzo9I	GATC	5 cut(s)	148, 237, 253, 334, 414
LmnI	GCTCC	2 cut(s)	131, 334
Lsp1109I	GCAGC	1 cut(s)	194
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	2 cut(s)	92, 543
MaeIII	GTNAC	1 cut(s)	289
MalI	GATC	5 cut(s)	150, 239, 255, 336, 416
MboI	GATC	5 cut(s)	148, 237, 253, 334, 414
MboII	GAAGA	1 cut(s)	145
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	6 cut(s)	301, 316, 549, 700, 707, 736
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	657
MmeI	TCCRAC	2 cut(s)	181, 551
MnlI	CCTC	4 cut(s)	107, 360, 452, 718
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	465, 477, 537, 552
MslI	CAYNNNNRTG	4 cut(s)	84, 219, 262, 380
Msp20I	TGGCCA	1 cut(s)	5
MspCI	CTTAAG	1 cut(s)	476
MspI	CCGG	1 cut(s)	411
MspR9I	CCNGG	1 cut(s)	412
MvnI	CGCG	1 cut(s)	69
NciI	CCSGG	1 cut(s)	412
NcoI	CCATGG	1 cut(s)	375
NdeII	GATC	5 cut(s)	148, 237, 253, 334, 414
NlaIII	CATG	9 cut(s)	64, 83, 109, 127, 244, 379, 447, 734, 750
NlaIV	GGNNCC	2 cut(s)	324, 485
NmuCI	GTSAC	1 cut(s)	289
NspI	RCATGY	2 cut(s)	83, 109
OliI	CACNNNNGTG	1 cut(s)	262
PfeI	GAWTC	4 cut(s)	401, 424, 438, 574
PkrI	GCNGC	2 cut(s)	68, 184
PleI	GAGTC	1 cut(s)	656
PpsI	GAGTC	1 cut(s)	656
PsiI	TTATAA	1 cut(s)	513
Psp1406I	AACGTT	1 cut(s)	92
PspN4I	GGNNCC	2 cut(s)	324, 485
PstI	CTGCAG	1 cut(s)	184
PstNI	CAGNNNCTG	1 cut(s)	332
RsaI	GTAC	2 cut(s)	193, 618
RsaNI	GTAC	2 cut(s)	192, 617
RseI	CAYNNNNRTG	4 cut(s)	84, 219, 262, 380
SaqAI	TTAA	4 cut(s)	465, 477, 537, 552
SatI	GCNGC	2 cut(s)	67, 183
Sau3AI	GATC	5 cut(s)	148, 237, 253, 334, 414
SchI	GAGTC	1 cut(s)	657
ScrFI	CCNGG	1 cut(s)	412
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	4 cut(s)	84, 219, 262, 380
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
SpeI	ACTAGT	1 cut(s)	622
Sse9I	AATT	6 cut(s)	301, 316, 549, 700, 707, 736
SsiI	CCGC	1 cut(s)	67
SspMI	CTAG	1 cut(s)	623
StyD4I	CCNGG	1 cut(s)	410
StyI	CCWWGG	1 cut(s)	375
TaaI	ACNGT	3 cut(s)	201, 261, 502
TaiI	ACGT	2 cut(s)	95, 546
TaqI	TCGA	1 cut(s)	366
TaqII	GACCGA	1 cut(s)	701
TasI	AATT	6 cut(s)	301, 316, 549, 700, 707, 736
TatI	WGTACW	2 cut(s)	191, 616
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	4 cut(s)	401, 424, 438, 574
Tru1I	TTAA	4 cut(s)	465, 477, 537, 552
Tru9I	TTAA	4 cut(s)	465, 477, 537, 552
TscAI	CASTG	1 cut(s)	266
TseFI	GTSAC	1 cut(s)	289
TseI	GCWGC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	289
TspDTI	ATGAA	2 cut(s)	28, 596
TspGWI	ACGGA	1 cut(s)	40
TspRI	CASTG	1 cut(s)	266
Vha464I	CTTAAG	1 cut(s)	476
XapI	RAATTY	2 cut(s)	301, 736
XceI	RCATGY	2 cut(s)	83, 109
XcmI	CCANNNNNNNNNTGG	1 cut(s)	164
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.