Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Reverse (-)

84160905 .. 84161411

Gene Structure 507 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG608100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTGTGTCAATGATCCACAATGGTGCATACCAAATGCTGGTACCATCAAAATCACTGCGACAAACTTTTGTCCTCCAAATTATGATCCACATTTTTATCCCTGGTGCAACCCCCCAAGAAAACACTTTGACTTGGCCATGCCCATGTTCGTAAAAATTGCTATCGCCAAAGCTGGGATAATTCCAGTAAAGTTTCGTAGAGTCCCATGTGCTAAGACAGGAGGGGTTAGGTTTGAGCTTAAAGGAAACCCCTACTGGATTACTGCAACCATCTTGAATGTTGGTGGTGCTGGTGATGTTACGGCCATGAAGATTAAAGGATCTAATTCCGATTGGCTTCAAATGCAACGCAATTGGGGACAAGTGTGGCAGATCGGAGTTAACTTAGTCGGACAAGGCTTATCGTTTCAAGTCACTACTAGTGATGGGAAGACGGTTGAGCTTGATAATGTTGCACCAGGAAATTGGCAATTTGGTCAAACCTATGAAGGAAAAAGCAATTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

168

Amino Acids

18.62

Weight (kDa)

9.18

Isoelectric Point (pI)

14.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	8 - 65	1.4e-10	Lytic transglycolase
Expansin_C	PF01357	76 - 153	3.4e-28	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	41
AccB1I	GGYRCC	1 cut(s)	41
AccB7I	CCANNNNNTGG	1 cut(s)	38
AclWI	GGATC	3 cut(s)	8, 80, 328
AcoI	YGGCCR	2 cut(s)	135, 303
AfaI	GTAC	1 cut(s)	43
AfiI	CCNNNNNNNGG	2 cut(s)	38, 174
AgsI	TTSAA	3 cut(s)	277, 341, 410
AhlI	ACTAGT	1 cut(s)	419
AjnI	CCWGG	2 cut(s)	101, 457
AleI	CACNNNNGTG	1 cut(s)	22
AluBI	AGCT	3 cut(s)	173, 238, 442
AluI	AGCT	3 cut(s)	173, 238, 442
AlwI	GGATC	3 cut(s)	8, 80, 328
AoxI	GGCC	2 cut(s)	135, 303
Asp718I	GGTACC	1 cut(s)	41
AsuHPI	GGTGA	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	137
BanI	GGYRCC	1 cut(s)	41
BbsI	GAAGAC	1 cut(s)	437
BccI	CCATC	3 cut(s)	53, 278, 419
BceAI	ACGGC	1 cut(s)	318
BciT130I	CCWGG	2 cut(s)	103, 459
BcuI	ACTAGT	1 cut(s)	419
BfaI	CTAG	1 cut(s)	420
Bme1390I	CCNGG	2 cut(s)	103, 459
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	2 cut(s)	103, 459
BpiI	GAAGAC	1 cut(s)	437
BsaJI	CCNNGG	1 cut(s)	101
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 174
Bse1I	ACTGG	2 cut(s)	185, 260
BseBI	CCWGG	2 cut(s)	103, 459
BseDI	CCNNGG	1 cut(s)	101
BseLI	CCNNNNNNNGG	2 cut(s)	38, 174
BseNI	ACTGG	2 cut(s)	185, 260
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	137, 305
BshNI	GGYRCC	1 cut(s)	41
BslFI	GGGAC	2 cut(s)	188, 372
BslI	CCNNNNNNNGG	2 cut(s)	38, 174
BsmFI	GGGAC	2 cut(s)	188, 372
BsnI	GGCC	2 cut(s)	137, 305
Bsp143I	GATC	4 cut(s)	13, 85, 320, 372
BspANI	GGCC	2 cut(s)	137, 305
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	3 cut(s)	8, 80, 328
BspT107I	GGYRCC	1 cut(s)	41
BsrI	ACTGG	2 cut(s)	185, 260
BssECI	CCNNGG	1 cut(s)	101
BssMI	GATC	4 cut(s)	13, 85, 320, 372
Bst2UI	CCWGG	2 cut(s)	103, 459
Bst4CI	ACNGT	1 cut(s)	436
BstDEI	CTNAG	2 cut(s)	213, 385
BstKTI	GATC	4 cut(s)	16, 88, 323, 375
BstMBI	GATC	4 cut(s)	13, 85, 320, 372
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNI	CCWGG	2 cut(s)	103, 459
BstSCI	CCNGG	2 cut(s)	101, 457
BstV2I	GAAGAC	1 cut(s)	437
BstX2I	RGATCY	1 cut(s)	320
BstXI	CCANNNNNNTGG	1 cut(s)	465
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	137, 305
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	1 cut(s)	54
Csp6I	GTAC	1 cut(s)	42
CviAII	CATG	4 cut(s)	139, 145, 207, 307
CviJI	RGCY	7 cut(s)	137, 173, 238, 305, 337, 399, 442
CviKI_1	RGCY	7 cut(s)	137, 173, 238, 305, 337, 399, 442
CviQI	GTAC	1 cut(s)	42
DdeI	CTNAG	2 cut(s)	213, 385
DpnI	GATC	4 cut(s)	15, 87, 322, 374
DpnII	GATC	4 cut(s)	13, 85, 320, 372
EaeI	YGGCCR	2 cut(s)	135, 303
EcoRII	CCWGG	2 cut(s)	101, 457
FaeI	CATG	4 cut(s)	142, 148, 210, 310
FaiI	YATR	8 cut(s)	29, 84, 140, 146, 208, 308, 486, 505
FaqI	GGGAC	2 cut(s)	188, 372
FatI	CATG	4 cut(s)	138, 144, 206, 306
FspBI	CTAG	1 cut(s)	420
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	137, 305
Hin1II	CATG	4 cut(s)	142, 148, 210, 310
HincII	GTYRAC	1 cut(s)	382
HindII	GTYRAC	1 cut(s)	382
HinfI	GANTC	1 cut(s)	201
HpaI	GTTAAC	1 cut(s)	382
HphI	GGTGA	1 cut(s)	305
Hpy166II	GTNNAC	1 cut(s)	382
Hpy188I	TCNGA	3 cut(s)	331, 377, 392
Hpy188III	TCNNGA	1 cut(s)	274
Hpy8I	GTNNAC	1 cut(s)	382
HpyAV	CCTTC	1 cut(s)	482
HpyCH4III	ACNGT	1 cut(s)	436
HpyCH4V	TGCA	5 cut(s)	27, 108, 266, 346, 455
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	2 cut(s)	213, 385
Hsp92II	CATG	4 cut(s)	142, 148, 210, 310
KpnI	GGTACC	1 cut(s)	45
KspAI	GTTAAC	1 cut(s)	382
Kzo9I	GATC	4 cut(s)	13, 85, 320, 372
MaeI	CTAG	1 cut(s)	420
MaeIII	GTNAC	2 cut(s)	298, 412
MalI	GATC	4 cut(s)	15, 87, 322, 374
MboI	GATC	4 cut(s)	13, 85, 320, 372
MboII	GAAGA	2 cut(s)	322, 442
MfeI	CAATTG	1 cut(s)	352
MflI	RGATCY	1 cut(s)	320
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	8 cut(s)	79, 156, 180, 325, 352, 463, 470, 499
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	210
MmeI	TCCRAC	1 cut(s)	370
MnlI	CCTC	2 cut(s)	84, 215
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	3 cut(s)	240, 315, 381
MslI	CAYNNNNRTG	2 cut(s)	22, 143
Msp20I	TGGCCA	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	103, 459
MunI	CAATTG	1 cut(s)	352
MvaI	CCWGG	2 cut(s)	103, 459
MwoI	GCNNNNNNNGC	1 cut(s)	343
NdeII	GATC	4 cut(s)	13, 85, 320, 372
NlaIII	CATG	4 cut(s)	142, 148, 210, 310
NlaIV	GGNNCC	1 cut(s)	43
NmuCI	GTSAC	1 cut(s)	412
OliI	CACNNNNGTG	1 cut(s)	22
PflMI	CCANNNNNTGG	1 cut(s)	38
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Psp6I	CCWGG	2 cut(s)	101, 457
PspFI	CCCAGC	1 cut(s)	173
PspGI	CCWGG	2 cut(s)	101, 457
PspN4I	GGNNCC	1 cut(s)	43
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	1 cut(s)	43
RsaNI	GTAC	1 cut(s)	42
RseI	CAYNNNNRTG	2 cut(s)	22, 143
SaqAI	TTAA	3 cut(s)	240, 315, 381
Sau3AI	GATC	4 cut(s)	13, 85, 320, 372
SchI	GAGTC	1 cut(s)	210
ScrFI	CCNGG	2 cut(s)	103, 459
SetI	ASST	5 cut(s)	175, 233, 240, 444, 485
SmiMI	CAYNNNNRTG	2 cut(s)	22, 143
SpeI	ACTAGT	1 cut(s)	419
Sse9I	AATT	8 cut(s)	79, 156, 180, 325, 352, 463, 470, 499
SspMI	CTAG	1 cut(s)	420
StyD4I	CCNGG	2 cut(s)	101, 457
TaaI	ACNGT	1 cut(s)	436
TasI	AATT	8 cut(s)	79, 156, 180, 325, 352, 463, 470, 499
Tru1I	TTAA	3 cut(s)	240, 315, 381
Tru9I	TTAA	3 cut(s)	240, 315, 381
TscAI	CASTG	1 cut(s)	61
TseFI	GTSAC	1 cut(s)	412
Tsp45I	GTSAC	1 cut(s)	412
TspDTI	ATGAA	2 cut(s)	323, 501
TspRI	CASTG	1 cut(s)	61
Van91I	CCANNNNNTGG	1 cut(s)	38
XspI	CTAG	1 cut(s)	420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.