AT5G39290

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found (By similarity)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0001146
Physical Location & Seq
Reverse (-)
15735794 .. 15736979
1186 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G39290.1

Sequence Viewer

Length: 840 bp
ATGAAACTCTTAGAAAAAATGATATATGTAGAATTTTTGATGATAATAATGGCGATGTGGGTCGTGCCAATGAGTTACGGTCATGGAGCGATGATTGGTAATGCAGTCGAAGCACCTGATGTAGCCGAAGCACCCGGGATTAATGACCCAAGCAAGGCACTCGACCCTAATTGGTATGACGCACGAGCCACGTTCTACGGTGACATCCATGGTGGAGACACTCAACAGGGAGCTTGTGGATACGGTAATCTATTCAGACAAGGCTATGGTCTAGCCACAGCAGCGTTAAGTACGGCACTCTTCAACGACGGGTACACATGTGGGGCTTGTTATGAAATCATGTGCACGCGTGATCCACAATGGTGTTTACCCGGATCCGTCAAGATCACAGCAACAAACTTCTGTCCCGCAAATTACAGCAAAACCACAGACCTTTGGTGCAATCCACCACAGAAACACTTTGATCTCTCCTTAGCAATGTTTCTCAAGATTGCCAAGTACAAAGCCGGGGTTGTCCCAGTTAGATACAGACGTATTCCTTGTAGCAAAACTGGTGGTGTCAAGTTTGAAACCAAAGGAAACCCTTATTTCTTAATGGTCTTGATATACAACGTAGGAGGAGCTGGAGATATTAAGTACGTGCAAGTTAAAGAAAACAAGACCGGGTGGATAACAATGAAAAAGAACTGGGGGCAGAATTGGACCACTAGTACAGTATTGACCGGCCAAGGTTTGTCGTTCAGAGTTACGACGACTGATGGGATTACAAAAGATTTTTGGAATGTGATGCCAAAAAATTGGGGATTTGGACAGACTTTTGATGGTAAGATTAACTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005618 GO:0005623 GO:0016020 GO:0030312 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

279

Amino Acids

30.98

Weight (kDa)

8.79

Isoelectric Point (pI)

21.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 93 - 176 4.8e-21 Lytic transglycolase
Expansin_C PF01357 187 - 264 1.9e-27 Expansin C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 349
AciI CCGC 1 cut(s) 408
AclWI GGATC 3 cut(s) 347, 369, 382
AcoI YGGCCR 1 cut(s) 724
AcsI RAATTY 1 cut(s) 32
AfaI GTAC 5 cut(s) 292, 314, 500, 638, 712
AfiI CCNNNNNNNGG 1 cut(s) 154
AflIII ACRYGT 2 cut(s) 317, 347
AgsI TTSAA 2 cut(s) 304, 569
AhlI ACTAGT 1 cut(s) 707
AleI CACNNNNGTG 1 cut(s) 361
AluBI AGCT 2 cut(s) 233, 623
AluI AGCT 2 cut(s) 233, 623
Alw21I GWGCWC 1 cut(s) 347
Alw26I GTCTC 1 cut(s) 210
Alw44I GTGCAC 1 cut(s) 343
AlwI GGATC 3 cut(s) 347, 369, 382
Ama87I CYCGRG 1 cut(s) 134
AoxI GGCC 1 cut(s) 724
ApaLI GTGCAC 1 cut(s) 343
ApeKI GCWGC 1 cut(s) 281
ApoI RAATTY 1 cut(s) 32
AseI ATTAAT 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 702
AsuC2I CCSGG 5 cut(s) 135, 136, 372, 508, 664
AsuHPI GGTGA 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 134
AvaII GGWCC 1 cut(s) 702
BaeGI GKGCMC 1 cut(s) 347
BaeI ACNNNNGTAYC 4 cut(s) 304, 337, 517, 550
BamHI GGATCC 1 cut(s) 374
BauI CACGAG 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 347
BbvI GCAGC 1 cut(s) 293
BccI CCATC 2 cut(s) 752, 815
BceAI ACGGC 1 cut(s) 309
BcgI CGANNNNNNTGC 2 cut(s) 142, 176
BciVI GTATCC 1 cut(s) 233
BcnI CCSGG 5 cut(s) 135, 136, 372, 508, 664
BcoDI GTCTC 1 cut(s) 210
BcuI ACTAGT 1 cut(s) 707
BfaI CTAG 2 cut(s) 272, 708
BfuI GTATCC 1 cut(s) 233
BisI GCNGC 1 cut(s) 282
BlsI GCNGC 1 cut(s) 283
Bme1390I CCNGG 5 cut(s) 135, 136, 372, 508, 664
Bme18I GGWCC 1 cut(s) 702
BmeT110I CYCGRG 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 702
BmiI GGNNCC 1 cut(s) 376
BmrFI CCNGG 5 cut(s) 135, 136, 372, 508, 664
BmrI ACTGGG 2 cut(s) 512, 697
BmsI GCATC 1 cut(s) 777
BmuI ACTGGG 2 cut(s) 512, 697
BpmI CTGGAG 1 cut(s) 645
Bpu10I CCTNAGC 1 cut(s) 472
BpuEI CTTGAG 1 cut(s) 470
BpuMI CCSGG 5 cut(s) 135, 136, 372, 508, 664
BsaAI YACGTR 1 cut(s) 640
BsaJI CCNNGG 4 cut(s) 134, 208, 507, 727
Bsc4I CCNNNNNNNGG 1 cut(s) 154
Bse118I RCCGGY 1 cut(s) 722
Bse1I ACTGG 3 cut(s) 518, 556, 692
Bse3DI GCAATG 1 cut(s) 483
BseDI CCNNGG 4 cut(s) 134, 208, 507, 727
BseGI GGATG 1 cut(s) 204
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMI GCAATG 1 cut(s) 483
BseNI ACTGG 3 cut(s) 518, 556, 692
BseRI GAGGAG 1 cut(s) 633
BseSI GKGCMC 1 cut(s) 347
BseXI GCAGC 1 cut(s) 293
Bsh1236I CGCG 1 cut(s) 349
BshFI GGCC 1 cut(s) 726
BsiHKAI GWGCWC 1 cut(s) 347
BsiHKCI CYCGRG 1 cut(s) 134
BsiSI CCGG 5 cut(s) 135, 372, 507, 663, 723
BslFI GGGAC 2 cut(s) 390, 500
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 1 cut(s) 210
BsmFI GGGAC 2 cut(s) 390, 500
BsnI GGCC 1 cut(s) 726
BsoBI CYCGRG 1 cut(s) 134
Bsp1286I GDGCHC 1 cut(s) 347
Bsp143I GATC 4 cut(s) 352, 374, 384, 463
Bsp19I CCATGG 1 cut(s) 208
BspACI CCGC 1 cut(s) 408
BspANI GGCC 1 cut(s) 726
BspFNI CGCG 1 cut(s) 349
BspLI GGNNCC 1 cut(s) 376
BspPI GGATC 3 cut(s) 347, 369, 382
BsrDI GCAATG 1 cut(s) 483
BsrFI RCCGGY 1 cut(s) 722
BsrI ACTGG 3 cut(s) 518, 556, 692
BssAI RCCGGY 1 cut(s) 722
BssECI CCNNGG 4 cut(s) 134, 208, 507, 727
BssMI GATC 4 cut(s) 352, 374, 384, 463
BssSI CACGAG 1 cut(s) 183
BssT1I CCWWGG 2 cut(s) 208, 727
Bst2BI CACGAG 1 cut(s) 183
Bst4CI ACNGT 4 cut(s) 80, 200, 245, 715
Bst6I CTCTTC 1 cut(s) 305
BstBAI YACGTR 1 cut(s) 640
BstC8I GCNNGC 1 cut(s) 347
BstDEI CTNAG 2 cut(s) 10, 472
BstDSI CCRYGG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 204
BstFNI CGCG 1 cut(s) 349
BstKTI GATC 4 cut(s) 355, 377, 387, 466
BstMAI GTCTC 1 cut(s) 210
BstMBI GATC 4 cut(s) 352, 374, 384, 463
BstMWI GCNNNNNNNGC 2 cut(s) 110, 281
BstNSI RCATGY 1 cut(s) 321
BstSCI CCNGG 5 cut(s) 133, 134, 370, 506, 662
BstSLI GKGCMC 1 cut(s) 347
BstUI CGCG 1 cut(s) 349
BstV1I GCAGC 1 cut(s) 293
BstX2I RGATCY 1 cut(s) 374
BstXI CCANNNNNNTGG 1 cut(s) 798
BstYI RGATCY 1 cut(s) 374
BsuI GTATCC 1 cut(s) 233
BsuRI GGCC 1 cut(s) 726
BtgI CCRYGG 1 cut(s) 208
BtgZI GCGATG 2 cut(s) 68, 104
BtsCI GGATG 1 cut(s) 204
Cac8I GCNNGC 1 cut(s) 347
Cfr10I RCCGGY 1 cut(s) 722
Cfr13I GGNCC 1 cut(s) 702
Cfr9I CCCGGG 1 cut(s) 134
CseI GACGC 1 cut(s) 188
Csp6I GTAC 5 cut(s) 291, 313, 499, 637, 711
CspCI CAANNNNNGTGG 2 cut(s) 535, 570
CviAII CATG 4 cut(s) 83, 209, 318, 340
CviJI RGCY 9 cut(s) 125, 188, 233, 264, 275, 326, 506, 623, 726
CviKI_1 RGCY 9 cut(s) 125, 188, 233, 264, 275, 326, 506, 623, 726
CviQI GTAC 5 cut(s) 291, 313, 499, 637, 711
DdeI CTNAG 2 cut(s) 10, 472
DpnI GATC 4 cut(s) 354, 376, 386, 465
DpnII GATC 4 cut(s) 352, 374, 384, 463
EaeI YGGCCR 1 cut(s) 724
Eam1104I CTCTTC 1 cut(s) 305
EarI CTCTTC 1 cut(s) 305
Eco130I CCWWGG 2 cut(s) 208, 727
Eco47I GGWCC 1 cut(s) 702
Eco88I CYCGRG 1 cut(s) 134
EcoT14I CCWWGG 2 cut(s) 208, 727
ErhI CCWWGG 2 cut(s) 208, 727
FaeI CATG 4 cut(s) 86, 212, 321, 343
FalI AAGNNNNNCTT 1 cut(s) 818
FaqI GGGAC 2 cut(s) 390, 500
FatI CATG 4 cut(s) 82, 208, 317, 339
FauI CCCGC 1 cut(s) 415
Fnu4HI GCNGC 1 cut(s) 282
FokI GGATG 1 cut(s) 191
Fsp4HI GCNGC 1 cut(s) 282
FspBI CTAG 2 cut(s) 272, 708
GluI GCNGC 1 cut(s) 282
GsuI CTGGAG 1 cut(s) 645
HaeIII GGCC 1 cut(s) 726
HapII CCGG 5 cut(s) 135, 372, 507, 663, 723
HgaI GACGC 1 cut(s) 188
Hin1II CATG 4 cut(s) 86, 212, 321, 343
HpaII CCGG 5 cut(s) 135, 372, 507, 663, 723
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 3 cut(s) 315, 345, 368
Hpy188I TCNGA 2 cut(s) 257, 743
Hpy188III TCNNGA 3 cut(s) 382, 487, 601
Hpy8I GTNNAC 3 cut(s) 315, 345, 368
Hpy99I CGWCG 2 cut(s) 311, 754
HpyCH4III ACNGT 4 cut(s) 80, 200, 245, 715
HpyCH4IV ACGT 4 cut(s) 191, 532, 612, 639
HpyCH4V TGCA 4 cut(s) 104, 345, 441, 643
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 281
HpyF3I CTNAG 2 cut(s) 10, 472
HpySE526I ACGT 4 cut(s) 191, 532, 612, 639
Hsp92II CATG 4 cut(s) 86, 212, 321, 343
Kzo9I GATC 4 cut(s) 352, 374, 384, 463
LmnI GCTCC 3 cut(s) 86, 230, 620
Lsp1109I GCAGC 1 cut(s) 293
LweI GCATC 1 cut(s) 777
MaeI CTAG 2 cut(s) 272, 708
MaeII ACGT 4 cut(s) 191, 532, 612, 639
MaeIII GTNAC 3 cut(s) 74, 200, 745
MalI GATC 4 cut(s) 354, 376, 386, 465
MboI GATC 4 cut(s) 352, 374, 384, 463
MboII GAAGA 1 cut(s) 292
MflI RGATCY 1 cut(s) 374
MhlI GDGCHC 1 cut(s) 347
MluCI AATT 5 cut(s) 32, 169, 412, 697, 796
MluI ACGCGT 1 cut(s) 347
MnlI CCTC 1 cut(s) 611
MseI TTAA 7 cut(s) 141, 287, 593, 633, 648, 831, 838
MslI CAYNNNNRTG 1 cut(s) 361
MspI CCGG 5 cut(s) 135, 372, 507, 663, 723
MspR9I CCNGG 5 cut(s) 135, 136, 372, 508, 664
MvnI CGCG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 110, 281
NciI CCSGG 5 cut(s) 135, 136, 372, 508, 664
NcoI CCATGG 1 cut(s) 208
NdeII GATC 4 cut(s) 352, 374, 384, 463
NlaIII CATG 4 cut(s) 86, 212, 321, 343
NlaIV GGNNCC 1 cut(s) 376
NmuCI GTSAC 1 cut(s) 200
NspI RCATGY 1 cut(s) 321
OliI CACNNNNGTG 1 cut(s) 361
PciI ACATGT 1 cut(s) 317
PkrI GCNGC 1 cut(s) 283
Ppu21I YACGTR 1 cut(s) 640
PscI ACATGT 1 cut(s) 317
PshBI ATTAAT 1 cut(s) 141
PspN4I GGNNCC 1 cut(s) 376
PspPI GGNCC 1 cut(s) 702
PsuI RGATCY 1 cut(s) 374
RsaI GTAC 5 cut(s) 292, 314, 500, 638, 712
RsaNI GTAC 5 cut(s) 291, 313, 499, 637, 711
RseI CAYNNNNRTG 1 cut(s) 361
SaqAI TTAA 7 cut(s) 141, 287, 593, 633, 648, 831, 838
SatI GCNGC 1 cut(s) 282
Sau3AI GATC 4 cut(s) 352, 374, 384, 463
Sau96I GGNCC 1 cut(s) 702
ScrFI CCNGG 5 cut(s) 135, 136, 372, 508, 664
SduI GDGCHC 1 cut(s) 347
SetI ASST 9 cut(s) 118, 194, 235, 435, 535, 615, 625, 642, 733
SfaNI GCATC 1 cut(s) 777
SinI GGWCC 1 cut(s) 702
SmaI CCCGGG 1 cut(s) 136
SmiMI CAYNNNNRTG 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
SpeI ACTAGT 1 cut(s) 707
Sse9I AATT 5 cut(s) 32, 169, 412, 697, 796
SsiI CCGC 1 cut(s) 408
SspMI CTAG 2 cut(s) 272, 708
StyD4I CCNGG 5 cut(s) 133, 134, 370, 506, 662
StyI CCWWGG 2 cut(s) 208, 727
TaaI ACNGT 4 cut(s) 80, 200, 245, 715
TaiI ACGT 4 cut(s) 194, 535, 615, 642
TaqI TCGA 2 cut(s) 108, 162
TasI AATT 5 cut(s) 32, 169, 412, 697, 796
TatI WGTACW 2 cut(s) 498, 710
Tru1I TTAA 7 cut(s) 141, 287, 593, 633, 648, 831, 838
Tru9I TTAA 7 cut(s) 141, 287, 593, 633, 648, 831, 838
TseFI GTSAC 1 cut(s) 200
TseI GCWGC 1 cut(s) 281
Tsp45I GTSAC 1 cut(s) 200
TspDTI ATGAA 3 cut(s) 17, 348, 692
TspGWI ACGGA 1 cut(s) 367
TspMI CCCGGG 1 cut(s) 134
VneI GTGCAC 1 cut(s) 343
VpaK11BI GGWCC 1 cut(s) 702
VspI ATTAAT 1 cut(s) 141
XapI RAATTY 1 cut(s) 32
XceI RCATGY 1 cut(s) 321
XmaI CCCGGG 1 cut(s) 134
XspI CTAG 2 cut(s) 272, 708
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.