Prupe.3G256600_v2.0.a1

expansin-A23-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001146
Physical Location & Seq
Reverse (-)
24463404 .. 24464337
934 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G256600.1

Sequence Viewer

Length: 780 bp
ATGGCTAAGTTTCAGAACTTGTTTACATGGGCAGTGTTCATCACTCTTCTGGTTCAAGCCATGGGCGATGTAATCCCTTTAGCTAAGGGACGCGCCGGCAAGATTTGGCATGATGCACACGCAACGTTTTATGGTGACCTGAACGGAGGAGAAACCATGCAGGGGGCTTGTGGATATGGTGATCTCTTCCAACAAGGCTATGGCCTGGAGACAGCAGCACTAAGCACAAAGCTGTTCAAGGACGGGCACGCTTGCGGTGCTTGTTTTCAGATCCGGTGTGTCAAGGATCCACAATGGTGCATCCCTAATGCCGGTGCAATCACAATCACTGCAACCAATTTTTGTCCTCCAAATTGGATTCCAGCTCCTGATCATTGGTGCAACCCGCCACAGAGACACTTCGATTTGTCCATGACGATGTTCACAAAACTCGCACAAGCGAAAGCCGGGATAATCCCGGTTAAATATCGCAGAGTCCCGTGCCAGAAAAGCGGAGGGGTTAAGTTTGAGCTTAAGGGAAACCCCTACTGGCTTACTGCATTGGTGTTCAACGTTGGCGGTGCCGGTGATGTTGCAAACGTTAAAATTAAAGGCTCTAGCACTGACTGGCTTCAAATGTCTCGCAATTGGGGCCAAGTTTGGCAGACGGGAAGCAACATAGTAGGGCAAAGCTTATCATTCTTGGTCACCACAAGTGATGGGAAAACACTTAGGTTTGATGATGTTGCACCAACAAATTGGCAATTTGGTCAGACCTATGAGGGGAGAATAAATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1 Pollen_allerg_1

Protein Analysis

260

Amino Acids

28.51

Weight (kDa)

8.89

Isoelectric Point (pI)

20.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 560
AccII CGCG 1 cut(s) 93
AciI CCGC 4 cut(s) 255, 386, 492, 558
AclI AACGTT 3 cut(s) 125, 552, 579
AclWI GGATC 3 cut(s) 265, 281, 294
AcsI RAATTY 1 cut(s) 772
AfiI CCNNNNNNNGG 3 cut(s) 162, 311, 762
AflII CTTAAG 1 cut(s) 512
AgsI TTSAA 4 cut(s) 56, 238, 550, 614
AjnI CCWGG 1 cut(s) 204
AleI CACNNNNGTG 1 cut(s) 295
AluBI AGCT 5 cut(s) 83, 232, 365, 511, 672
AluI AGCT 5 cut(s) 83, 232, 365, 511, 672
Alw26I GTCTC 3 cut(s) 203, 388, 624
AlwI GGATC 3 cut(s) 265, 281, 294
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 2 cut(s) 202, 631
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 1 cut(s) 772
AspLEI GCGC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 631
AsuC2I CCSGG 2 cut(s) 448, 458
AsuHPI GGTGA 4 cut(s) 146, 191, 578, 679
BaeGI GKGCMC 1 cut(s) 249
BamHI GGATCC 1 cut(s) 286
BanI GGYRCC 1 cut(s) 560
BbvI GCAGC 1 cut(s) 227
BccI CCATC 1 cut(s) 692
BciT130I CCWGG 1 cut(s) 206
BclI TGATCA 1 cut(s) 370
BcnI CCSGG 2 cut(s) 448, 458
BcoDI GTCTC 3 cut(s) 203, 388, 624
BfaI CTAG 1 cut(s) 597
BfrI CTTAAG 1 cut(s) 512
BisI GCNGC 1 cut(s) 216
BlsI GCNGC 1 cut(s) 217
Bme1390I CCNGG 3 cut(s) 206, 448, 458
BmgT120I GGNCC 1 cut(s) 631
BmiI GGNNCC 3 cut(s) 288, 562, 632
BmrFI CCNGG 3 cut(s) 206, 448, 458
BmsI GCATC 2 cut(s) 103, 309
BpmI CTGGAG 1 cut(s) 227
Bpu10I CCTNAGC 1 cut(s) 84
BpuMI CCSGG 2 cut(s) 448, 458
BsaJI CCNNGG 1 cut(s) 60
BsaWI WCCGGW 1 cut(s) 273
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 311, 762
Bse118I RCCGGY 3 cut(s) 95, 311, 563
Bse1I ACTGG 2 cut(s) 533, 611
BseBI CCWGG 1 cut(s) 206
BseDI CCNNGG 1 cut(s) 60
BseGI GGATG 1 cut(s) 300
BseLI CCNNNNNNNGG 3 cut(s) 162, 311, 762
BseNI ACTGG 2 cut(s) 533, 611
BseRI GAGGAG 1 cut(s) 162
BseSI GKGCMC 1 cut(s) 249
BseXI GCAGC 1 cut(s) 227
Bsh1236I CGCG 1 cut(s) 93
BshFI GGCC 2 cut(s) 204, 633
BshNI GGYRCC 1 cut(s) 560
BsiSI CCGG 6 cut(s) 96, 274, 312, 447, 458, 564
BslFI GGGAC 2 cut(s) 102, 461
BslI CCNNNNNNNGG 3 cut(s) 162, 311, 762
BsmAI GTCTC 3 cut(s) 203, 388, 624
BsmFI GGGAC 2 cut(s) 102, 461
BsnI GGCC 2 cut(s) 204, 633
Bsp1286I GDGCHC 1 cut(s) 249
Bsp143I GATC 4 cut(s) 181, 270, 286, 370
Bsp19I CCATGG 1 cut(s) 60
BspACI CCGC 4 cut(s) 255, 386, 492, 558
BspANI GGCC 2 cut(s) 204, 633
BspFNI CGCG 1 cut(s) 93
BspLI GGNNCC 3 cut(s) 288, 562, 632
BspPI GGATC 3 cut(s) 265, 281, 294
BspT107I GGYRCC 1 cut(s) 560
BspTI CTTAAG 1 cut(s) 512
BsrFI RCCGGY 3 cut(s) 95, 311, 563
BsrI ACTGG 2 cut(s) 533, 611
BssAI RCCGGY 3 cut(s) 95, 311, 563
BssECI CCNNGG 1 cut(s) 60
BssMI GATC 4 cut(s) 181, 270, 286, 370
BssT1I CCWWGG 1 cut(s) 60
Bst2UI CCWGG 1 cut(s) 206
Bst6I CTCTTC 2 cut(s) 51, 191
BstAFI CTTAAG 1 cut(s) 512
BstC8I GCNNGC 3 cut(s) 97, 249, 253
BstDEI CTNAG 4 cut(s) 6, 84, 221, 710
BstDSI CCRYGG 1 cut(s) 60
BstEII GGTNACC 2 cut(s) 134, 685
BstF5I GGATG 1 cut(s) 300
BstFNI CGCG 1 cut(s) 93
BstHHI GCGC 1 cut(s) 95
BstKTI GATC 4 cut(s) 184, 273, 289, 373
BstMAI GTCTC 3 cut(s) 203, 388, 624
BstMBI GATC 4 cut(s) 181, 270, 286, 370
BstMWI GCNNNNNNNGC 3 cut(s) 257, 489, 630
BstNI CCWGG 1 cut(s) 206
BstPI GGTNACC 2 cut(s) 134, 685
BstSCI CCNGG 3 cut(s) 204, 446, 456
BstSLI GKGCMC 1 cut(s) 249
BstUI CGCG 1 cut(s) 93
BstV1I GCAGC 1 cut(s) 227
BstX2I RGATCY 2 cut(s) 270, 286
BstXI CCANNNNNNTGG 1 cut(s) 738
BstYI RGATCY 2 cut(s) 270, 286
BsuRI GGCC 2 cut(s) 204, 633
BtgI CCRYGG 1 cut(s) 60
BtgZI GCGATG 1 cut(s) 81
BtsCI GGATG 1 cut(s) 300
BtsI GCAGTG 2 cut(s) 39, 327
BtsIMutI CAGTG 3 cut(s) 39, 327, 600
Cac8I GCNNGC 3 cut(s) 97, 249, 253
CaiI CAGNNNCTG 1 cut(s) 368
CfoI GCGC 1 cut(s) 95
Cfr10I RCCGGY 3 cut(s) 95, 311, 563
Cfr13I GGNCC 1 cut(s) 631
CseI GACGC 1 cut(s) 99
CviAII CATG 5 cut(s) 27, 61, 110, 157, 412
DdeI CTNAG 4 cut(s) 6, 84, 221, 710
DpnI GATC 4 cut(s) 183, 272, 288, 372
DpnII GATC 4 cut(s) 181, 270, 286, 370
Eam1104I CTCTTC 2 cut(s) 51, 191
EarI CTCTTC 2 cut(s) 51, 191
Eco130I CCWWGG 1 cut(s) 60
Eco91I GGTNACC 2 cut(s) 134, 685
EcoO65I GGTNACC 2 cut(s) 134, 685
EcoRII CCWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 60
ErhI CCWWGG 1 cut(s) 60
FaeI CATG 5 cut(s) 30, 64, 113, 160, 415
FaqI GGGAC 2 cut(s) 102, 461
FatI CATG 5 cut(s) 26, 60, 109, 156, 411
FauI CCCGC 1 cut(s) 393
FbaI TGATCA 1 cut(s) 370
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 1 cut(s) 597
GlaI GCGC 1 cut(s) 94
GluI GCNGC 1 cut(s) 216
GsuI CTGGAG 1 cut(s) 227
HaeIII GGCC 2 cut(s) 204, 633
HapII CCGG 6 cut(s) 96, 274, 312, 447, 458, 564
HgaI GACGC 1 cut(s) 99
HhaI GCGC 1 cut(s) 95
Hin1II CATG 5 cut(s) 30, 64, 113, 160, 415
Hin6I GCGC 1 cut(s) 93
HinP1I GCGC 1 cut(s) 93
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 2 cut(s) 358, 474
HpaII CCGG 6 cut(s) 96, 274, 312, 447, 458, 564
HphI GGTGA 4 cut(s) 146, 191, 578, 679
Hpy166II GTNNAC 2 cut(s) 24, 423
Hpy188I TCNGA 3 cut(s) 15, 270, 753
Hpy188III TCNNGA 1 cut(s) 368
Hpy8I GTNNAC 2 cut(s) 24, 423
HpyCH4IV ACGT 3 cut(s) 125, 552, 579
HpyCH4V TGCA 9 cut(s) 116, 160, 300, 317, 332, 381, 539, 575, 728
HpyF10VI GCNNNNNNNGC 3 cut(s) 257, 489, 630
HpyF3I CTNAG 4 cut(s) 6, 84, 221, 710
HpySE526I ACGT 3 cut(s) 125, 552, 579
Hsp92II CATG 5 cut(s) 30, 64, 113, 160, 415
HspAI GCGC 1 cut(s) 93
KroI GCCGGC 1 cut(s) 95
KroNI GCCGGC 1 cut(s) 97
Ksp22I TGATCA 1 cut(s) 370
Kzo9I GATC 4 cut(s) 181, 270, 286, 370
LmnI GCTCC 1 cut(s) 370
Lsp1109I GCAGC 1 cut(s) 227
LweI GCATC 2 cut(s) 103, 309
MaeI CTAG 1 cut(s) 597
MaeII ACGT 3 cut(s) 125, 552, 579
MaeIII GTNAC 2 cut(s) 134, 685
MalI GATC 4 cut(s) 183, 272, 288, 372
MboI GATC 4 cut(s) 181, 270, 286, 370
MboII GAAGA 2 cut(s) 38, 178
MfeI CAATTG 1 cut(s) 625
MflI RGATCY 2 cut(s) 270, 286
MhlI GDGCHC 1 cut(s) 249
MluCI AATT 7 cut(s) 337, 352, 585, 625, 736, 743, 772
MlyI GAGTC 1 cut(s) 483
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 4 cut(s) 140, 357, 488, 754
MroNI GCCGGC 1 cut(s) 95
MseI TTAA 5 cut(s) 462, 501, 513, 582, 588
MslI CAYNNNNRTG 2 cut(s) 295, 416
MspCI CTTAAG 1 cut(s) 512
MspI CCGG 6 cut(s) 96, 274, 312, 447, 458, 564
MspR9I CCNGG 3 cut(s) 206, 448, 458
MunI CAATTG 1 cut(s) 625
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 93
MwoI GCNNNNNNNGC 3 cut(s) 257, 489, 630
NaeI GCCGGC 1 cut(s) 97
NciI CCSGG 2 cut(s) 448, 458
NcoI CCATGG 1 cut(s) 60
NdeII GATC 4 cut(s) 181, 270, 286, 370
NgoMIV GCCGGC 1 cut(s) 95
NlaIII CATG 5 cut(s) 30, 64, 113, 160, 415
NlaIV GGNNCC 3 cut(s) 288, 562, 632
NmuCI GTSAC 2 cut(s) 134, 685
OliI CACNNNNGTG 1 cut(s) 295
PdiI GCCGGC 1 cut(s) 97
PfeI GAWTC 1 cut(s) 358
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 482
PpsI GAGTC 1 cut(s) 482
Psp1406I AACGTT 3 cut(s) 125, 552, 579
Psp6I CCWGG 1 cut(s) 204
PspEI GGTNACC 2 cut(s) 134, 685
PspGI CCWGG 1 cut(s) 204
PspN4I GGNNCC 3 cut(s) 288, 562, 632
PspPI GGNCC 1 cut(s) 631
PstNI CAGNNNCTG 1 cut(s) 368
PsuI RGATCY 2 cut(s) 270, 286
RseI CAYNNNNRTG 2 cut(s) 295, 416
SaqAI TTAA 5 cut(s) 462, 501, 513, 582, 588
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 4 cut(s) 181, 270, 286, 370
Sau96I GGNCC 1 cut(s) 631
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 3 cut(s) 206, 448, 458
SduI GDGCHC 1 cut(s) 249
SfaNI GCATC 2 cut(s) 103, 309
SmiMI CAYNNNNRTG 2 cut(s) 295, 416
SmlI CTYRAG 1 cut(s) 512
SmoI CTYRAG 1 cut(s) 512
Sse9I AATT 7 cut(s) 337, 352, 585, 625, 736, 743, 772
SsiI CCGC 4 cut(s) 255, 386, 492, 558
SspMI CTAG 1 cut(s) 597
StyD4I CCNGG 3 cut(s) 204, 446, 456
StyI CCWWGG 1 cut(s) 60
TaiI ACGT 3 cut(s) 128, 555, 582
TaqI TCGA 1 cut(s) 402
TasI AATT 7 cut(s) 337, 352, 585, 625, 736, 743, 772
TfiI GAWTC 1 cut(s) 358
Tru1I TTAA 5 cut(s) 462, 501, 513, 582, 588
Tru9I TTAA 5 cut(s) 462, 501, 513, 582, 588
TscAI CASTG 3 cut(s) 39, 334, 607
TseFI GTSAC 2 cut(s) 134, 685
TseI GCWGC 1 cut(s) 215
Tsp45I GTSAC 2 cut(s) 134, 685
TspDTI ATGAA 1 cut(s) 28
TspGWI ACGGA 1 cut(s) 159
TspRI CASTG 3 cut(s) 39, 334, 607
Vha464I CTTAAG 1 cut(s) 512
XapI RAATTY 1 cut(s) 772
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XspI CTAG 1 cut(s) 597
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.