Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Forward (+)

36214656 .. 36215798

Gene Structure 1143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g47930.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCTAAGTTTCAGAACTCATACACATTGTCACTGTTCATCATCAGCACTCTTTTGGTTCAAGCCATGGGAGATGCTCCTTGGGAGGCCGGATCCGCCACGTTTTACGGTGACATGACCGGAAAAGAAACCATGCAGGGGGCTTGTGGATATGGTGATCTCATCCAACAAGGCTATGGCCTCGAAACAGCAGCACTCAGCACAGCACTGTTCAACAATGGACTAACTTGCGGTGCTTGCTTTGAGATTATGTGTGTCAATGATCCACAATGGTGCATCCCTAATGCTGGCACTATCAAAATCACTGGAACAAACTTTTGTCCTCCAAACTACGATCCACATTTCTATCCCTGGTGCAACCCCCCAAGGAAACACTTCGACTTGTCCATGCCCATGTTCGTAAAAATTGCTCAAGCCAAAGCTGGGATAATTCCAGTGCAGTTTCGAAGAACCCCATGTGTTAAGCAAGGAGGGATTAGGTTTCAGCTAAGTGGAAACCCCAACTTTGTTACTGCAACTGTTTTGAATGTTGCTGGTGCAGGTGATGTTACAGCCATCAGTGTCAAAACACCTACTTCTAATTGGCTCCCAATGAGCCGCAACTGGGGACAACTTTGGGCTGTCGGAGGACAAGTCCCCCTAATCGGGCAAGTCTTATCGTTCCAAGTCACTACTAGTGATCAGAAGACGCTTGTGTTCAATAATGTTGCACCTGGAAACTGGCAATTTGGGCAGACCTATGAAGCAGCAGGCAATTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

254

Amino Acids

27.43

Weight (kDa)

7.51

Isoelectric Point (pI)

17.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_1	PF03330	63 - 148	5.7e-19	Lytic transglycolase
Expansin_C	PF01357	159 - 238	9.3e-25	Expansin C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	530
Acc36I	ACCTGC	1 cut(s)	530
AciI	CCGC	3 cut(s)	96, 231, 598
AclWI	GGATC	4 cut(s)	87, 100, 257, 329
AfiI	CCNNNNNNNGG	6 cut(s)	138, 287, 423, 604, 644, 645
AgsI	TTSAA	4 cut(s)	62, 214, 526, 700
AhlI	ACTAGT	1 cut(s)	674
AjnI	CCWGG	2 cut(s)	350, 712
AleI	CACNNNNGTG	1 cut(s)	271
AluBI	AGCT	2 cut(s)	422, 487
AluI	AGCT	2 cut(s)	422, 487
AlwI	GGATC	4 cut(s)	87, 100, 257, 329
AoxI	GGCC	2 cut(s)	87, 178
ApeKI	GCWGC	2 cut(s)	191, 746
Asp700I	GAANNNNTTC	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	122, 167, 554
AsuII	TTCGAA	1 cut(s)	445
BamHI	GGATCC	1 cut(s)	92
BbsI	GAAGAC	1 cut(s)	692
BbvI	GCAGC	2 cut(s)	203, 758
BccI	CCATC	1 cut(s)	563
BciT130I	CCWGG	2 cut(s)	352, 714
BclI	TGATCA	1 cut(s)	679
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	1 cut(s)	675
BfuAI	ACCTGC	1 cut(s)	530
BisI	GCNGC	3 cut(s)	192, 598, 747
BlsI	GCNGC	3 cut(s)	193, 599, 748
Bme1390I	CCNGG	2 cut(s)	352, 714
BmiI	GGNNCC	2 cut(s)	94, 587
BmrFI	CCNGG	2 cut(s)	352, 714
BmrI	ACTGGG	1 cut(s)	613
BmsI	GCATC	2 cut(s)	64, 285
BmuI	ACTGGG	1 cut(s)	613
BpiI	GAAGAC	1 cut(s)	692
Bpu14I	TTCGAA	1 cut(s)	445
BpuEI	CTTGAG	1 cut(s)	396
BsaJI	CCNNGG	4 cut(s)	66, 80, 350, 365
BsaWI	WCCGGW	1 cut(s)	119
BsaXI	ACNNNNNCTCC	2 cut(s)	618, 648
Bsc4I	CCNNNNNNNGG	6 cut(s)	138, 287, 423, 604, 644, 645
Bse1I	ACTGG	4 cut(s)	310, 434, 608, 725
BseBI	CCWGG	2 cut(s)	352, 714
BseDI	CCNNGG	4 cut(s)	66, 80, 350, 365
BseGI	GGATG	2 cut(s)	162, 276
BseLI	CCNNNNNNNGG	6 cut(s)	138, 287, 423, 604, 644, 645
BseMII	CTCAG	1 cut(s)	211
BseNI	ACTGG	4 cut(s)	310, 434, 608, 725
BseXI	GCAGC	2 cut(s)	203, 758
BseYI	CCCAGC	1 cut(s)	422
BsgI	GTGCAG	2 cut(s)	458, 558
BshFI	GGCC	2 cut(s)	89, 180
BsiSI	CCGG	2 cut(s)	90, 120
BslFI	GGGAC	2 cut(s)	620, 621
BslI	CCNNNNNNNGG	6 cut(s)	138, 287, 423, 604, 644, 645
BsmFI	GGGAC	2 cut(s)	620, 621
BsnI	GGCC	2 cut(s)	89, 180
Bsp119I	TTCGAA	1 cut(s)	445
Bsp143I	GATC	5 cut(s)	92, 157, 262, 334, 679
Bsp19I	CCATGG	1 cut(s)	66
BspACI	CCGC	3 cut(s)	96, 231, 598
BspANI	GGCC	2 cut(s)	89, 180
BspCNI	CTCAG	1 cut(s)	210
BspLI	GGNNCC	2 cut(s)	94, 587
BspMI	ACCTGC	1 cut(s)	530
BspPI	GGATC	4 cut(s)	87, 100, 257, 329
BspT104I	TTCGAA	1 cut(s)	445
BsrI	ACTGG	4 cut(s)	310, 434, 608, 725
BssECI	CCNNGG	4 cut(s)	66, 80, 350, 365
BssMI	GATC	5 cut(s)	92, 157, 262, 334, 679
BssT1I	CCWWGG	3 cut(s)	66, 80, 365
Bst2UI	CCWGG	2 cut(s)	352, 714
Bst4CI	ACNGT	4 cut(s)	36, 110, 210, 520
BstBI	TTCGAA	1 cut(s)	445
BstC8I	GCNNGC	3 cut(s)	238, 289, 751
BstDEI	CTNAG	3 cut(s)	6, 197, 488
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	2 cut(s)	162, 276
BstKTI	GATC	5 cut(s)	95, 160, 265, 337, 682
BstMBI	GATC	5 cut(s)	92, 157, 262, 334, 679
BstMWI	GCNNNNNNNGC	3 cut(s)	95, 237, 730
BstNI	CCWGG	2 cut(s)	352, 714
BstSCI	CCNGG	2 cut(s)	350, 712
BstV1I	GCAGC	2 cut(s)	203, 758
BstV2I	GAAGAC	1 cut(s)	692
BstX2I	RGATCY	1 cut(s)	92
BstYI	RGATCY	1 cut(s)	92
BsuRI	GGCC	2 cut(s)	89, 180
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	2 cut(s)	162, 276
BtsIMutI	CAGTG	5 cut(s)	32, 206, 303, 441, 565
BveI	ACCTGC	1 cut(s)	530
Cac8I	GCNNGC	3 cut(s)	238, 289, 751
CseI	GACGC	1 cut(s)	697
CviAII	CATG	6 cut(s)	67, 115, 133, 388, 394, 456
DdeI	CTNAG	3 cut(s)	6, 197, 488
DpnI	GATC	5 cut(s)	94, 159, 264, 336, 681
DpnII	GATC	5 cut(s)	92, 157, 262, 334, 679
EciI	GGCGGA	1 cut(s)	85
Eco130I	CCWWGG	3 cut(s)	66, 80, 365
EcoRII	CCWGG	2 cut(s)	350, 712
EcoT14I	CCWWGG	3 cut(s)	66, 80, 365
ErhI	CCWWGG	3 cut(s)	66, 80, 365
FaeI	CATG	6 cut(s)	70, 118, 136, 391, 397, 459
FaqI	GGGAC	2 cut(s)	620, 621
FatI	CATG	6 cut(s)	66, 114, 132, 387, 393, 455
FbaI	TGATCA	1 cut(s)	679
Fnu4HI	GCNGC	3 cut(s)	192, 598, 747
FokI	GGATG	2 cut(s)	149, 263
Fsp4HI	GCNGC	3 cut(s)	192, 598, 747
FspBI	CTAG	1 cut(s)	675
GluI	GCNGC	3 cut(s)	192, 598, 747
GsaI	CCCAGC	1 cut(s)	426
HaeIII	GGCC	2 cut(s)	89, 180
HapII	CCGG	2 cut(s)	90, 120
HgaI	GACGC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	70, 118, 136, 391, 397, 459
HpaII	CCGG	2 cut(s)	90, 120
HphI	GGTGA	3 cut(s)	122, 167, 554
Hpy188I	TCNGA	3 cut(s)	15, 626, 684
HpyCH4III	ACNGT	4 cut(s)	36, 110, 210, 520
HpyCH4IV	ACGT	1 cut(s)	101
HpyCH4V	TGCA	7 cut(s)	136, 276, 357, 439, 515, 539, 710
HpyF10VI	GCNNNNNNNGC	3 cut(s)	95, 237, 730
HpyF3I	CTNAG	3 cut(s)	6, 197, 488
HpySE526I	ACGT	1 cut(s)	101
Hsp92II	CATG	6 cut(s)	70, 118, 136, 391, 397, 459
Ksp22I	TGATCA	1 cut(s)	679
Kzo9I	GATC	5 cut(s)	92, 157, 262, 334, 679
LmnI	GCTCC	2 cut(s)	82, 591
Lsp1109I	GCAGC	2 cut(s)	203, 758
LweI	GCATC	2 cut(s)	64, 285
MaeI	CTAG	1 cut(s)	675
MaeII	ACGT	1 cut(s)	101
MaeIII	GTNAC	5 cut(s)	30, 110, 508, 547, 667
MalI	GATC	5 cut(s)	94, 159, 264, 336, 681
MboI	GATC	5 cut(s)	92, 157, 262, 334, 679
MboII	GAAGA	2 cut(s)	459, 697
MflI	RGATCY	1 cut(s)	92
MluCI	AATT	5 cut(s)	405, 429, 580, 725, 754
MmeI	TCCRAC	2 cut(s)	190, 604
MnlI	CCTC	5 cut(s)	79, 191, 333, 464, 620
MroXI	GAANNNNTTC	1 cut(s)	374
MseI	TTAA	2 cut(s)	462, 760
MslI	CAYNNNNRTG	2 cut(s)	271, 392
MspI	CCGG	2 cut(s)	90, 120
MspR9I	CCNGG	2 cut(s)	352, 714
MvaI	CCWGG	2 cut(s)	352, 714
MwoI	GCNNNNNNNGC	3 cut(s)	95, 237, 730
NcoI	CCATGG	1 cut(s)	66
NdeII	GATC	5 cut(s)	92, 157, 262, 334, 679
NlaIII	CATG	6 cut(s)	70, 118, 136, 391, 397, 459
NlaIV	GGNNCC	2 cut(s)	94, 587
NmuCI	GTSAC	3 cut(s)	30, 110, 667
NspV	TTCGAA	1 cut(s)	445
OliI	CACNNNNGTG	1 cut(s)	271
PaqCI	CACCTGC	1 cut(s)	530
PdmI	GAANNNNTTC	1 cut(s)	374
PkrI	GCNGC	3 cut(s)	193, 599, 748
Psp6I	CCWGG	2 cut(s)	350, 712
PspFI	CCCAGC	1 cut(s)	422
PspGI	CCWGG	2 cut(s)	350, 712
PspN4I	GGNNCC	2 cut(s)	94, 587
PsuI	RGATCY	1 cut(s)	92
RseI	CAYNNNNRTG	2 cut(s)	271, 392
SaqAI	TTAA	2 cut(s)	462, 760
SatI	GCNGC	3 cut(s)	192, 598, 747
Sau3AI	GATC	5 cut(s)	92, 157, 262, 334, 679
ScrFI	CCNGG	2 cut(s)	352, 714
SetI	ASST	8 cut(s)	104, 424, 482, 489, 544, 574, 715, 740
SfaNI	GCATC	2 cut(s)	64, 285
SfuI	TTCGAA	1 cut(s)	445
SmiMI	CAYNNNNRTG	2 cut(s)	271, 392
SmlI	CTYRAG	1 cut(s)	411
SmoI	CTYRAG	1 cut(s)	411
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	5 cut(s)	405, 429, 580, 725, 754
SsiI	CCGC	3 cut(s)	96, 231, 598
SspMI	CTAG	1 cut(s)	675
StyD4I	CCNGG	2 cut(s)	350, 712
StyI	CCWWGG	3 cut(s)	66, 80, 365
TaaI	ACNGT	4 cut(s)	36, 110, 210, 520
TaiI	ACGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	183, 378, 445
TasI	AATT	5 cut(s)	405, 429, 580, 725, 754
TauI	GCSGC	1 cut(s)	600
Tru1I	TTAA	2 cut(s)	462, 760
Tru9I	TTAA	2 cut(s)	462, 760
TscAI	CASTG	5 cut(s)	39, 213, 310, 441, 565
TseFI	GTSAC	3 cut(s)	30, 110, 667
TseI	GCWGC	2 cut(s)	191, 746
Tsp45I	GTSAC	3 cut(s)	30, 110, 667
TspDTI	ATGAA	2 cut(s)	28, 756
TspRI	CASTG	5 cut(s)	39, 213, 310, 441, 565
XcmI	CCANNNNNNNNNTGG	1 cut(s)	173
XmnI	GAANNNNTTC	1 cut(s)	374
XspI	CTAG	1 cut(s)	675

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.