Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001341.1

Orthogroup ID

OG0001146

Physical Location & Seq

Genomic Coordinates Reverse (-)

36693 .. 37732

Gene Structure 1040 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001341.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

atgagtaagttccagaacttgttcggagcggcgacagtgttcatcatcattctttcggtccaaaccatgagcaatccaatcggcgagagtcctgaccatgactggcacgatggacatgcaaccttctacggcgacatgaatggaagcgaaactatgcgttatggtctagatacagcagctctaagcaccacattgttcaacaatggactaacttgcggtgcttgtttcgagatcatgtgcgtccatgatccacaatggtgcatccctaatgcaggcacgatcaaaattactgcaacaaatttttgtccaccaaactgggctcaaggaggctggtgcaacccgccatacgatcacttcgacttgtccatgcctatgttcacaaaaatcgcgcaatacaaagctggaatagttccggtcaagtttcgccgagtcccgtgtgctaaaacaggaggggttaagtttgagcttaaaggaaaccccttctggattactgctttggtttacaatgtgggtggtgccggtgatgttaacgctgtcagaatcaaaggatctaattccggttggcttcaaatgtcgcgcaattggggccaagtttggcagaccagcgcagacttagtagggcaaagcttatcattccaagtcactaccagtgaagacaaaactattgactttgataatgttgcaccagggaattggcaatttggtcaaacatatgaggggaatggtaacttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

244

Amino Acids

26.82

Weight (kDa)

5.66

Isoelectric Point (pI)

26.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001146)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G39270 AT5G39280 AT5G39290 AT5G39300
fragaria_vesca	FvH4_3g34000 FvH4_6g47030 FvH4_6g47031 FvH4_6g47033 FvH4_6g47930
malus_domestica	MD02G1219300.v1.1 MD17G1057700.v1.1
prunus_persica	Prupe.2G121800_v2.0.a1 Prupe.3G256600_v2.0.a1
pyrus_communis	pycom111g05410 pycom17g05780
rosa_chinensis	RchiOBHm_Chr2g0166091 RchiOBHm_Chr2g0166111 RchiOBHm_Chr5g0061541 RchiOBHm_Chr5g0061551 RchiOBHm_Chr6g0245581
rosa_laevigata	RLG00000015302 RLG00000021584 RLG00000021586 RLG00000035690
rosa_multiflora	Rmu_co8047734.1_g000001 Rmu_sc0001341.1_g000008 Rmu_sc0006218.1_g000025 Rmu_sc0006218.1_g000027 Rmu_sc0006720.1_g000007 Rmu_sc0010824.1_g000007
rosa_roxburghii	Rroxscaffold_1G00019120 Rroxscaffold_2G00085190 Rroxscaffold_2G00085210
rosa_rugosa	Rorug02G0520200.1 Rorug02G0520300 Rorug05G0341900 Rorug05G0514600 Rorug05G0514600
rosa_samantha	Rh2AG586200 Rh2AG586400 Rh2BG598000 Rh2BG598200 Rh2CG568700 Rh2CG568900 Rh2DG608000 Rh2DG608100 Rh5BG415800 Rh5CG440600 Rh5DG430300 Rh6AG029600 Rh6BG026700 Rh6CG026100 Rh6DG025500
rosa_wichuraiana	Rw2G021660 Rw2G048870 Rw2G048880 Rw5G037940 Rw6G002510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	515
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	2 cut(s)	389, 577
AciI	CCGC	3 cut(s)	29, 216, 341
AclWI	GGATC	2 cut(s)	242, 556
AcsI	RAATTY	1 cut(s)	298
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	2 cut(s)	199, 569
AjnI	CCWGG	1 cut(s)	685
AleI	CACNNNNGTG	1 cut(s)	256
AluBI	AGCT	4 cut(s)	179, 401, 466, 627
AluI	AGCT	4 cut(s)	179, 401, 466, 627
AlwI	GGATC	2 cut(s)	242, 556
AoxI	GGCC	1 cut(s)	586
ApeKI	GCWGC	1 cut(s)	176
ApoI	RAATTY	1 cut(s)	298
Asp700I	GAANNNNTTC	1 cut(s)	20
AspLEI	GCGC	3 cut(s)	391, 579, 608
AspS9I	GGNCC	2 cut(s)	58, 586
AsuHPI	GGTGA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	58
BanI	GGYRCC	1 cut(s)	515
BanII	GRGCYC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	660
BbvI	GCAGC	1 cut(s)	188
BccI	CCATC	1 cut(s)	104
BceAI	ACGGC	1 cut(s)	145
BcgI	CGANNNNNNTGC	4 cut(s)	61, 95, 98, 132
BciT130I	CCWGG	1 cut(s)	687
BfaI	CTAG	1 cut(s)	167
BisI	GCNGC	2 cut(s)	30, 177
BlsI	GCNGC	2 cut(s)	31, 178
Bme1390I	CCNGG	1 cut(s)	687
Bme18I	GGWCC	1 cut(s)	58
BmgT120I	GGNCC	2 cut(s)	58, 586
BmiI	GGNNCC	2 cut(s)	517, 587
BmrFI	CCNGG	1 cut(s)	687
BmrI	ACTGGG	1 cut(s)	325
BmsI	GCATC	1 cut(s)	270
BmuI	ACTGGG	1 cut(s)	325
BpiI	GAAGAC	1 cut(s)	660
BpuEI	CTTGAG	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	686
BsaWI	WCCGGW	2 cut(s)	412, 557
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	518
Bse1I	ACTGG	3 cut(s)	107, 320, 648
BseBI	CCWGG	1 cut(s)	687
BseDI	CCNNGG	1 cut(s)	686
BseGI	GGATG	1 cut(s)	261
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseNI	ACTGG	3 cut(s)	107, 320, 648
BseXI	GCAGC	1 cut(s)	188
Bsh1236I	CGCG	2 cut(s)	389, 577
BshFI	GGCC	1 cut(s)	588
BshNI	GGYRCC	1 cut(s)	515
BsiSI	CCGG	3 cut(s)	413, 519, 558
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	588
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	5 cut(s)	231, 247, 279, 349, 548
BspACI	CCGC	3 cut(s)	29, 216, 341
BspANI	GGCC	1 cut(s)	588
BspFNI	CGCG	2 cut(s)	389, 577
BspLI	GGNNCC	2 cut(s)	517, 587
BspPI	GGATC	2 cut(s)	242, 556
BspT107I	GGYRCC	1 cut(s)	515
BsrBI	CCGCTC	1 cut(s)	29
BsrFI	RCCGGY	1 cut(s)	518
BsrI	ACTGG	3 cut(s)	107, 320, 648
BssAI	RCCGGY	1 cut(s)	518
BssECI	CCNNGG	1 cut(s)	686
BssMI	GATC	5 cut(s)	231, 247, 279, 349, 548
Bst2UI	CCWGG	1 cut(s)	687
Bst4CI	ACNGT	1 cut(s)	37
BstC8I	GCNNGC	1 cut(s)	274
BstDEI	CTNAG	2 cut(s)	182, 613
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	2 cut(s)	389, 577
BstHHI	GCGC	3 cut(s)	391, 579, 608
BstKTI	GATC	5 cut(s)	234, 250, 282, 352, 551
BstMBI	GATC	5 cut(s)	231, 247, 279, 349, 548
BstMWI	GCNNNNNNNGC	1 cut(s)	585
BstNI	CCWGG	1 cut(s)	687
BstNSI	RCATGY	1 cut(s)	119
BstSCI	CCNGG	1 cut(s)	685
BstUI	CGCG	2 cut(s)	389, 577
BstV1I	GCAGC	1 cut(s)	188
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	548
BstXI	CCANNNNNNTGG	2 cut(s)	315, 693
BstYI	RGATCY	1 cut(s)	548
BsuRI	GGCC	1 cut(s)	588
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	2 cut(s)	42, 655
Cac8I	GCNNGC	1 cut(s)	274
CfoI	GCGC	3 cut(s)	391, 579, 608
Cfr10I	RCCGGY	1 cut(s)	518
Cfr13I	GGNCC	2 cut(s)	58, 586
CseI	GACGC	1 cut(s)	229
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	7 cut(s)	67, 98, 116, 136, 235, 245, 367
CviJI	RGCY	8 cut(s)	179, 320, 330, 401, 466, 565, 588, 627
CviKI_1	RGCY	8 cut(s)	179, 320, 330, 401, 466, 565, 588, 627
DdeI	CTNAG	2 cut(s)	182, 613
DpnI	GATC	5 cut(s)	233, 249, 281, 351, 550
DpnII	GATC	5 cut(s)	231, 247, 279, 349, 548
Eco24I	GRGCYC	1 cut(s)	322
Eco47I	GGWCC	1 cut(s)	58
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	685
EcoT38I	GRGCYC	1 cut(s)	322
FaeI	CATG	7 cut(s)	70, 101, 119, 139, 238, 248, 370
FaqI	GGGAC	1 cut(s)	416
FatI	CATG	7 cut(s)	66, 97, 115, 135, 234, 244, 366
FauI	CCCGC	1 cut(s)	348
FauNDI	CATATG	1 cut(s)	712
Fnu4HI	GCNGC	2 cut(s)	30, 177
FokI	GGATG	1 cut(s)	248
FriOI	GRGCYC	1 cut(s)	322
Fsp4HI	GCNGC	2 cut(s)	30, 177
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	3 cut(s)	390, 578, 607
GluI	GCNGC	2 cut(s)	30, 177
HaeIII	GGCC	1 cut(s)	588
HapII	CCGG	3 cut(s)	413, 519, 558
HgaI	GACGC	1 cut(s)	229
HhaI	GCGC	3 cut(s)	391, 579, 608
Hin1II	CATG	7 cut(s)	70, 101, 119, 139, 238, 248, 370
Hin6I	GCGC	3 cut(s)	389, 577, 606
HinP1I	GCGC	3 cut(s)	389, 577, 606
HincII	GTYRAC	1 cut(s)	529
HindII	GTYRAC	1 cut(s)	529
HindIII	AAGCTT	1 cut(s)	625
HinfI	GANTC	3 cut(s)	88, 429, 540
HpaI	GTTAAC	1 cut(s)	529
HpaII	CCGG	3 cut(s)	413, 519, 558
HphI	GGTGA	1 cut(s)	533
Hpy166II	GTNNAC	4 cut(s)	308, 378, 502, 529
Hpy188I	TCNGA	2 cut(s)	26, 539
Hpy188III	TCNNGA	5 cut(s)	13, 92, 167, 229, 484
Hpy8I	GTNNAC	4 cut(s)	308, 378, 502, 529
HpyAV	CCTTC	2 cut(s)	133, 490
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	6 cut(s)	119, 261, 272, 293, 336, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	585
HpyF3I	CTNAG	2 cut(s)	182, 613
Hsp92II	CATG	7 cut(s)	70, 101, 119, 139, 238, 248, 370
HspAI	GCGC	3 cut(s)	389, 577, 606
KspAI	GTTAAC	1 cut(s)	529
Kzo9I	GATC	5 cut(s)	231, 247, 279, 349, 548
LmnI	GCTCC	1 cut(s)	26
Lsp1109I	GCAGC	1 cut(s)	188
LweI	GCATC	1 cut(s)	270
MaeI	CTAG	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	640, 725
MalI	GATC	5 cut(s)	233, 249, 281, 351, 550
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	5 cut(s)	231, 247, 279, 349, 548
MboII	GAAGA	1 cut(s)	665
MfeI	CAATTG	1 cut(s)	580
MflI	RGATCY	1 cut(s)	548
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	6 cut(s)	285, 298, 553, 580, 691, 698
MlyI	GAGTC	2 cut(s)	97, 438
MnlI	CCTC	3 cut(s)	320, 443, 709
MroXI	GAANNNNTTC	1 cut(s)	20
MseI	TTAA	3 cut(s)	456, 468, 528
MslI	CAYNNNNRTG	2 cut(s)	256, 371
MspI	CCGG	3 cut(s)	413, 519, 558
MspR9I	CCNGG	1 cut(s)	687
MunI	CAATTG	1 cut(s)	580
MvaI	CCWGG	1 cut(s)	687
MvnI	CGCG	2 cut(s)	389, 577
MwoI	GCNNNNNNNGC	1 cut(s)	585
NdeI	CATATG	1 cut(s)	712
NdeII	GATC	5 cut(s)	231, 247, 279, 349, 548
NlaIII	CATG	7 cut(s)	70, 101, 119, 139, 238, 248, 370
NlaIV	GGNNCC	2 cut(s)	517, 587
NmeAIII	GCCGAG	1 cut(s)	452
NmuCI	GTSAC	1 cut(s)	640
NspI	RCATGY	1 cut(s)	119
OliI	CACNNNNGTG	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	1 cut(s)	354
PdmI	GAANNNNTTC	1 cut(s)	20
PfeI	GAWTC	1 cut(s)	540
PkrI	GCNGC	2 cut(s)	31, 178
PleI	GAGTC	2 cut(s)	96, 437
PpsI	GAGTC	2 cut(s)	96, 437
Psp6I	CCWGG	1 cut(s)	685
PspGI	CCWGG	1 cut(s)	685
PspN4I	GGNNCC	2 cut(s)	517, 587
PspPI	GGNCC	2 cut(s)	58, 586
PsuI	RGATCY	1 cut(s)	548
RseI	CAYNNNNRTG	2 cut(s)	256, 371
SaqAI	TTAA	3 cut(s)	456, 468, 528
SatI	GCNGC	2 cut(s)	30, 177
Sau3AI	GATC	5 cut(s)	231, 247, 279, 349, 548
Sau96I	GGNCC	2 cut(s)	58, 586
SchI	GAGTC	2 cut(s)	97, 438
ScrFI	CCNGG	1 cut(s)	687
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	5 cut(s)	125, 181, 403, 468, 629
SfaNI	GCATC	1 cut(s)	270
SinI	GGWCC	1 cut(s)	58
SmiMI	CAYNNNNRTG	2 cut(s)	256, 371
SmlI	CTYRAG	1 cut(s)	321
SmoI	CTYRAG	1 cut(s)	321
Sse9I	AATT	6 cut(s)	285, 298, 553, 580, 691, 698
SsiI	CCGC	3 cut(s)	29, 216, 341
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	685
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	228, 357
TaqII	GACCGA	1 cut(s)	46
TasI	AATT	6 cut(s)	285, 298, 553, 580, 691, 698
TauI	GCSGC	1 cut(s)	32
TfiI	GAWTC	1 cut(s)	540
Tru1I	TTAA	3 cut(s)	456, 468, 528
Tru9I	TTAA	3 cut(s)	456, 468, 528
TscAI	CASTG	2 cut(s)	42, 655
TseFI	GTSAC	1 cut(s)	640
TseI	GCWGC	1 cut(s)	176
Tsp45I	GTSAC	1 cut(s)	640
TspDTI	ATGAA	2 cut(s)	31, 152
TspRI	CASTG	2 cut(s)	42, 655
VpaK11BI	GGWCC	1 cut(s)	58
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	1 cut(s)	298
XbaI	TCTAGA	1 cut(s)	166
XceI	RCATGY	1 cut(s)	119
XmnI	GAANNNNTTC	1 cut(s)	20
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.