Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

16285711 .. 16287947

Gene Structure 2237 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G40670.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGCGTCGTGGAATTCGATTCCGCTGGAGATCTCGTACGAAATCGTTGGATGGATCGCGTTTGCTTCGTGGTCAATTAGCTTTTACCCACAGCTGATTTTGAATTTCCGTAGGAGAAGTGTTGTTGGATTGAACTTCGACTTCGTGATGTTGAATTTGACAAAGCACTCGTCGTATATGATCTACAATGTCTGCCTCTACTTTAGTCCTGTTATTCAAAAGCAGTACTTTGACACTTATGGCGATAAAGAGATGATACCTGTGGCTGCAAATGATGTTGCATTCTCGATCCATGCAGTTGTAATGACAGCTGTTACACTGTTCCAGATCTTTATCTATGAACGTGGACCTCAAAAAGTATCCAGACTTGCTATAGGTATTGTGGTTGTTGTGTGGGGATTTGCAGCTATCTGTTTCTTCATAGCATTACCTACACACTCTTGGCTATGGCTCATTTCAATCTTCAATTCGATTCAGGTCTTCATGACATGCGTCAAGTACATCCCACAGGCAAAGATGAACTTCACTAGGAAGAGCACAGTCGGGTGGAGCATCGGGAATATTCTTCTCGATTTTACTGGAGGACTTGCTAACTATCTGCAAATGGTTATACAATCTATTGACCAAAATTCTTGGAAGAATTTCTATGGGAACATGGGAAAGACTCTTCTCTCACTTATATCAATATTTTTCGACATCCTCTTCATGTTTCAACACTATGTGTTATACCCAGAGAAGAAAGTCTCAAAATCTCCGGAAACTGGTGAGGAATCGAACGAACCACTCATTGATTCTTCTCATGAACATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000099 GO:0000101 GO:0003333 GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006811 GO:0006820 GO:0006865 GO:0008150 GO:0008509 GO:0008514 GO:0015075 GO:0015171 GO:0015179 GO:0015184 GO:0015318 GO:0015711 GO:0015804 GO:0015807 GO:0015811 GO:0015849 GO:0016020 GO:0022857 GO:0031090 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046942 GO:0046943 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072337 GO:0072348 GO:0072349 GO:0098588 GO:0098656 GO:0098805 GO:1901682 GO:1902475 GO:1903825 GO:1905039

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

270

Amino Acids

31.03

Weight (kDa)

7.0

Isoelectric Point (pI)

41.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 71	1.7e-18	PQ loop repeat
PQ-loop	PF04193	152 - 209	3.4e-16	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	59
AccIII	TCCGGA	1 cut(s)	754
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	2 cut(s)	62, 283
AcsI	RAATTY	5 cut(s)	13, 103, 154, 628, 640
AcyI	GRCGYC	1 cut(s)	5
AdeI	CACNNNGTG	1 cut(s)	721
AfaI	GTAC	3 cut(s)	38, 227, 500
AfiI	CCNNNNNNNGG	1 cut(s)	761
AflIII	ACRYGT	1 cut(s)	805
AgsI	TTSAA	7 cut(s)	103, 133, 154, 218, 459, 466, 713
AluBI	AGCT	4 cut(s)	81, 94, 311, 407
AluI	AGCT	4 cut(s)	81, 94, 311, 407
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	1 cut(s)	748
AlwI	GGATC	2 cut(s)	62, 283
Aor13HI	TCCGGA	1 cut(s)	754
ApeKI	GCWGC	2 cut(s)	266, 404
ApoI	RAATTY	5 cut(s)	13, 103, 154, 628, 640
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
Asp700I	GAANNNNTTC	1 cut(s)	641
AspS9I	GGNCC	1 cut(s)	347
AsuHPI	GGTGA	1 cut(s)	776
AvaII	GGWCC	1 cut(s)	347
BbsI	GAAGAC	1 cut(s)	472
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	2 cut(s)	253, 416
BccI	CCATC	1 cut(s)	45
BciVI	GTATCC	1 cut(s)	370
BcoDI	GTCTC	1 cut(s)	748
BfaI	CTAG	1 cut(s)	528
BfmI	CTRYAG	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	370
BglII	AGATCT	2 cut(s)	30, 327
BisI	GCNGC	2 cut(s)	267, 405
BlsI	GCNGC	2 cut(s)	268, 406
BmcAI	AGTACT	1 cut(s)	227
Bme18I	GGWCC	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	347
BmsI	GCATC	1 cut(s)	561
BoxI	GACNNNNGTC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	472
BpmI	CTGGAG	2 cut(s)	47, 600
BsaBI	GATNNNNATC	1 cut(s)	332
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	754
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
Bsc4I	CCNNNNNNNGG	1 cut(s)	761
Bse1I	ACTGG	2 cut(s)	583, 766
Bse8I	GATNNNNATC	1 cut(s)	332
BseAI	TCCGGA	1 cut(s)	754
BseGI	GGATG	3 cut(s)	56, 501, 696
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	761
BseNI	ACTGG	2 cut(s)	583, 766
BseXI	GCAGC	2 cut(s)	253, 416
Bsh1236I	CGCG	1 cut(s)	59
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	755
BsiWI	CGTACG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	761
BsmAI	GTCTC	1 cut(s)	748
BsmI	GAATGC	1 cut(s)	281
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp13I	TCCGGA	1 cut(s)	754
Bsp143I	GATC	5 cut(s)	30, 54, 180, 288, 327
BspACI	CCGC	1 cut(s)	23
BspEI	TCCGGA	1 cut(s)	754
BspFNI	CGCG	1 cut(s)	59
BspHI	TCATGA	2 cut(s)	483, 799
BspPI	GGATC	2 cut(s)	62, 283
BspQI	GCTCTTC	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	583, 766
BssMI	GATC	5 cut(s)	30, 54, 180, 288, 327
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	2 cut(s)	321, 541
Bst6I	CTCTTC	3 cut(s)	527, 672, 707
BstACI	GRCGYC	1 cut(s)	5
BstF5I	GGATG	3 cut(s)	56, 501, 696
BstFNI	CGCG	1 cut(s)	59
BstKTI	GATC	5 cut(s)	33, 57, 183, 291, 330
BstMAI	GTCTC	1 cut(s)	748
BstMBI	GATC	5 cut(s)	30, 54, 180, 288, 327
BstNSI	RCATGY	2 cut(s)	492, 809
BstPAI	GACNNNNGTC	1 cut(s)	491
BstSFI	CTRYAG	1 cut(s)	372
BstUI	CGCG	1 cut(s)	59
BstV1I	GCAGC	2 cut(s)	253, 416
BstV2I	GAAGAC	1 cut(s)	472
BstX2I	RGATCY	2 cut(s)	30, 327
BstYI	RGATCY	2 cut(s)	30, 327
BsuI	GTATCC	1 cut(s)	370
BtsCI	GGATG	3 cut(s)	56, 501, 696
BtsIMutI	CAGTG	1 cut(s)	317
CciI	TCATGA	2 cut(s)	483, 799
Cfr13I	GGNCC	1 cut(s)	347
CseI	GACGC	1 cut(s)	481
Csp6I	GTAC	3 cut(s)	37, 226, 499
CviAII	CATG	7 cut(s)	293, 484, 489, 655, 706, 800, 806
CviJI	RGCY	7 cut(s)	81, 94, 266, 311, 407, 445, 451
CviKI_1	RGCY	7 cut(s)	81, 94, 266, 311, 407, 445, 451
CviQI	GTAC	3 cut(s)	37, 226, 499
DpnI	GATC	5 cut(s)	32, 56, 182, 290, 329
DpnII	GATC	5 cut(s)	30, 54, 180, 288, 327
DraIII	CACNNNGTG	1 cut(s)	721
Eam1104I	CTCTTC	3 cut(s)	527, 672, 707
EarI	CTCTTC	3 cut(s)	527, 672, 707
Eco47I	GGWCC	1 cut(s)	347
EcoRI	GAATTC	1 cut(s)	13
FaeI	CATG	7 cut(s)	296, 487, 492, 658, 709, 803, 809
FalI	AAGNNNNNCTT	4 cut(s)	212, 244, 506, 538
FatI	CATG	7 cut(s)	292, 483, 488, 654, 705, 799, 805
Fnu4HI	GCNGC	2 cut(s)	267, 405
FokI	GGATG	3 cut(s)	63, 488, 683
Fsp4HI	GCNGC	2 cut(s)	267, 405
FspBI	CTAG	1 cut(s)	528
GluI	GCNGC	2 cut(s)	267, 405
GsuI	CTGGAG	2 cut(s)	47, 600
HapII	CCGG	1 cut(s)	755
HgaI	GACGC	1 cut(s)	481
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	7 cut(s)	296, 487, 492, 658, 709, 803, 809
HinfI	GANTC	5 cut(s)	19, 472, 664, 770, 791
HpaII	CCGG	1 cut(s)	755
HphI	GGTGA	1 cut(s)	776
Hpy166II	GTNNAC	1 cut(s)	347
Hpy188III	TCNNGA	9 cut(s)	145, 286, 325, 363, 484, 556, 569, 755, 800
Hpy8I	GTNNAC	1 cut(s)	347
Hpy99I	CGWCG	2 cut(s)	10, 175
HpyCH4III	ACNGT	2 cut(s)	321, 541
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	5 cut(s)	269, 281, 296, 404, 601
HpySE526I	ACGT	1 cut(s)	343
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	7 cut(s)	296, 487, 492, 658, 709, 803, 809
Kpn2I	TCCGGA	1 cut(s)	754
Kzo9I	GATC	5 cut(s)	30, 54, 180, 288, 327
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	2 cut(s)	253, 416
LweI	GCATC	1 cut(s)	561
MaeI	CTAG	1 cut(s)	528
MaeII	ACGT	1 cut(s)	343
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	5 cut(s)	32, 56, 182, 290, 329
MboI	GATC	5 cut(s)	30, 54, 180, 288, 327
MflI	RGATCY	2 cut(s)	30, 327
MhlI	GDGCHC	1 cut(s)	539
MluCI	AATT	7 cut(s)	13, 75, 103, 154, 466, 628, 640
MlyI	GAGTC	1 cut(s)	658
MmeI	TCCRAC	2 cut(s)	28, 106
MnlI	CCTC	5 cut(s)	206, 360, 575, 710, 760
MroI	TCCGGA	1 cut(s)	754
MroXI	GAANNNNTTC	1 cut(s)	641
MseI	TTAA	1 cut(s)	811
MslI	CAYNNNNRTG	1 cut(s)	804
MspA1I	CMGCKG	3 cut(s)	25, 94, 311
MspI	CCGG	1 cut(s)	755
Mva1269I	GAATGC	1 cut(s)	281
MvnI	CGCG	1 cut(s)	59
NdeII	GATC	5 cut(s)	30, 54, 180, 288, 327
NlaIII	CATG	7 cut(s)	296, 487, 492, 658, 709, 803, 809
NspI	RCATGY	2 cut(s)	492, 809
PagI	TCATGA	2 cut(s)	483, 799
PciI	ACATGT	1 cut(s)	805
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	281
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	4 cut(s)	19, 472, 770, 791
Pfl23II	CGTACG	1 cut(s)	36
PkrI	GCNGC	2 cut(s)	268, 406
PleI	GAGTC	1 cut(s)	658
PpsI	GAGTC	1 cut(s)	658
PscI	ACATGT	1 cut(s)	805
PshAI	GACNNNNGTC	1 cut(s)	491
PspLI	CGTACG	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	347
PsuI	RGATCY	2 cut(s)	30, 327
PvuII	CAGCTG	2 cut(s)	94, 311
RsaI	GTAC	3 cut(s)	38, 227, 500
RsaNI	GTAC	3 cut(s)	37, 226, 499
RseI	CAYNNNNRTG	1 cut(s)	804
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	811
SatI	GCNGC	2 cut(s)	267, 405
Sau3AI	GATC	5 cut(s)	30, 54, 180, 288, 327
Sau96I	GGNCC	1 cut(s)	347
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	658
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	1 cut(s)	561
SfcI	CTRYAG	1 cut(s)	372
SinI	GGWCC	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	804
Sse9I	AATT	7 cut(s)	13, 75, 103, 154, 466, 628, 640
SsiI	CCGC	1 cut(s)	23
SspI	AATATT	2 cut(s)	562, 687
SspMI	CTAG	1 cut(s)	528
TaaI	ACNGT	2 cut(s)	321, 541
TaiI	ACGT	1 cut(s)	346
TaqI	TCGA	7 cut(s)	17, 138, 287, 470, 570, 693, 773
TasI	AATT	7 cut(s)	13, 75, 103, 154, 466, 628, 640
TatI	WGTACW	2 cut(s)	225, 498
TfiI	GAWTC	4 cut(s)	19, 472, 770, 791
Tru1I	TTAA	1 cut(s)	811
Tru9I	TTAA	1 cut(s)	811
TscAI	CASTG	1 cut(s)	324
TseI	GCWGC	2 cut(s)	266, 404
TspDTI	ATGAA	5 cut(s)	354, 409, 472, 533, 694
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	324
VpaK11BI	GGWCC	1 cut(s)	347
XapI	RAATTY	5 cut(s)	13, 103, 154, 628, 640
XceI	RCATGY	2 cut(s)	492, 809
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	1 cut(s)	528
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.