Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8240537.1

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 371

Gene Structure 371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8240537.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atggcgtcgtggaattcgattcagctggagatcgcatacagagttctggggtggttgactttcactttttgggccgtcggcttctaccctcaagtgttcttgaatttccgtcgaaaaagtgttgtggggctgagcatcgattttgtggtactgaatttcacgaagcactcgtcgtatctcatttacaacgccactctctacttcagctccgccgcgcgttcagaagca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

76

Amino Acids

8.81

Weight (kDa)

9.6

Isoelectric Point (pI)

39.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	215, 217
AciI	CCGC	2 cut(s)	210, 213
AcsI	RAATTY	3 cut(s)	13, 103, 154
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	150
AgsI	TTSAA	1 cut(s)	103
AluBI	AGCT	2 cut(s)	25, 207
AluI	AGCT	2 cut(s)	25, 207
AoxI	GGCC	1 cut(s)	72
ApoI	RAATTY	3 cut(s)	13, 103, 154
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	72
BceAI	ACGGC	1 cut(s)	59
BisI	GCNGC	1 cut(s)	213
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	1 cut(s)	214
BmgT120I	GGNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	5
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
BseCI	ATCGAT	1 cut(s)	138
BseMII	CTCAG	1 cut(s)	122
Bsh1236I	CGCG	2 cut(s)	215, 217
BshFI	GGCC	1 cut(s)	74
BshVI	ATCGAT	1 cut(s)	138
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	2 cut(s)	210, 213
BspANI	GGCC	1 cut(s)	74
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	215, 217
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	5
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	131
BstFNI	CGCG	2 cut(s)	215, 217
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstUI	CGCG	2 cut(s)	215, 217
Bsu15I	ATCGAT	1 cut(s)	138
BsuRI	GGCC	1 cut(s)	74
BsuTUI	ATCGAT	1 cut(s)	138
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	149
CviJI	RGCY	5 cut(s)	25, 74, 81, 130, 207
CviKI_1	RGCY	5 cut(s)	25, 74, 81, 130, 207
CviQI	GTAC	1 cut(s)	149
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	199
Eco57I	CTGAAG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	13
FaiI	YATR	1 cut(s)	37
Fnu4HI	GCNGC	1 cut(s)	213
Fsp4HI	GCNGC	1 cut(s)	213
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	1 cut(s)	213
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	74
HhaI	GCGC	1 cut(s)	217
Hin1I	GRCGYC	1 cut(s)	5
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	1 cut(s)	19
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	223
Hpy188III	TCNNGA	2 cut(s)	100, 160
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	4 cut(s)	10, 80, 114, 175
HpyF3I	CTNAG	1 cut(s)	131
Hsp92I	GRCGYC	1 cut(s)	5
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	2 cut(s)	11, 32
LweI	GCATC	1 cut(s)	144
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MluCI	AATT	3 cut(s)	13, 103, 154
MnlI	CCTC	1 cut(s)	99
MspA1I	CMGCKG	1 cut(s)	25
MvnI	CGCG	2 cut(s)	215, 217
NdeII	GATC	1 cut(s)	30
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 167
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	150
RsaNI	GTAC	1 cut(s)	149
SatI	GCNGC	1 cut(s)	213
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	72
SetI	ASST	2 cut(s)	27, 209
SfaNI	GCATC	1 cut(s)	144
SgeI	CNNG	7 cut(s)	21, 38, 59, 104, 112, 172, 181
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	3 cut(s)	13, 103, 154
SsiI	CCGC	2 cut(s)	210, 213
TaqI	TCGA	3 cut(s)	17, 112, 138
TasI	AATT	3 cut(s)	13, 103, 154
TauI	GCSGC	1 cut(s)	215
TfiI	GAWTC	1 cut(s)	19
TspGWI	ACGGA	1 cut(s)	98
XapI	RAATTY	3 cut(s)	13, 103, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.