Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

86714709 .. 86717032

Gene Structure 2324 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54106

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCCGTCGGCTTCTACCCTCAAGTGTTCTTGAATTTCCGTCGAAAAAGTGTTGTGGGGCTGAGCATCGATTTTGTGGTGCTGAATTGGACGAAACACACGTCGTATCTCATTTACAACGCCTCTCTTTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTTGAAAAGTATGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCAATTATCCTTTTCCAAATTGCAATCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGTATCTTGGTTGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGCACAAATGGCCGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTCTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATCTTCTTTTCATTTGCCAACATTATGTGCTGTATCCTTCCAAGAAGGCATTGATATCTCCTAAAATGATCACCAACAAGGAGGACTTGGAGCCCCTTGTCAGTTCTGATAATCACCGGCCAAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

274

Amino Acids

31.13

Weight (kDa)

8.85

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	5.3e-16	PQ loop repeat
PQ-loop	PF04193	152 - 208	6.7e-15	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AcoI	YGGCCR	2 cut(s)	606, 812
AcsI	RAATTY	2 cut(s)	13, 103
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	168
AgsI	TTSAA	4 cut(s)	103, 233, 466, 476
AjiI	CACGTC	1 cut(s)	171
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	25, 207, 266
AluI	AGCT	3 cut(s)	25, 207, 266
Alw21I	GWGCWC	1 cut(s)	539
AoxI	GGCC	3 cut(s)	72, 606, 812
ApeKI	GCWGC	2 cut(s)	266, 404
ApoI	RAATTY	2 cut(s)	13, 103
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	649, 757, 800
BanII	GRGCYC	1 cut(s)	789
BbsI	GAAGAC	1 cut(s)	668
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	2 cut(s)	253, 391
BccI	CCATC	1 cut(s)	536
BceAI	ACGGC	4 cut(s)	59, 197, 281, 593
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	2 cut(s)	370, 738
BclI	TGATCA	2 cut(s)	622, 762
BfmI	CTRYAG	2 cut(s)	261, 405
BfuI	GTATCC	2 cut(s)	370, 738
BisI	GCNGC	2 cut(s)	267, 405
BlpI	GCTNAGC	1 cut(s)	131
BlsI	GCNGC	2 cut(s)	268, 406
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	509
BmgBI	CACGTC	1 cut(s)	171
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	786
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	144
BpiI	GAAGAC	1 cut(s)	668
BpmI	CTGGAG	1 cut(s)	47
Bpu1102I	GCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bse118I	RCCGGY	1 cut(s)	810
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	507
BseMII	CTCAG	1 cut(s)	122
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	2 cut(s)	253, 391
BsgI	GTGCAG	1 cut(s)	632
BshFI	GGCC	3 cut(s)	74, 608, 814
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	811
BsnI	GGCC	3 cut(s)	74, 608, 814
Bsp1286I	GDGCHC	2 cut(s)	539, 789
Bsp143I	GATC	5 cut(s)	30, 571, 622, 694, 762
Bsp1720I	GCTNAGC	1 cut(s)	131
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	3 cut(s)	74, 608, 814
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	138
BspLI	GGNNCC	1 cut(s)	786
BspMAI	CTGCAG	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	810
BssAI	RCCGGY	1 cut(s)	810
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	5 cut(s)	30, 571, 622, 694, 762
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	1 cut(s)	490
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	131
BstKTI	GATC	5 cut(s)	33, 574, 625, 697, 765
BstMBI	GATC	5 cut(s)	30, 571, 622, 694, 762
BstMWI	GCNNNNNNNGC	1 cut(s)	605
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	2 cut(s)	261, 405
BstV1I	GCAGC	2 cut(s)	253, 391
BstV2I	GAAGAC	1 cut(s)	668
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	370, 738
BsuRI	GGCC	3 cut(s)	74, 608, 814
BsuTUI	ATCGAT	1 cut(s)	138
BtrI	CACGTC	1 cut(s)	171
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	1 cut(s)	665
Cfr10I	RCCGGY	1 cut(s)	810
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	1 cut(s)	226
CviAII	CATG	2 cut(s)	293, 517
CviQI	GTAC	1 cut(s)	226
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	5 cut(s)	32, 573, 624, 696, 764
DpnII	GATC	5 cut(s)	30, 571, 622, 694, 762
EaeI	YGGCCR	2 cut(s)	606, 812
EciI	GGCGGA	1 cut(s)	199
Eco24I	GRGCYC	1 cut(s)	789
Eco32I	GATATC	1 cut(s)	750
Eco57I	CTGAAG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	750
EcoT38I	GRGCYC	1 cut(s)	789
FaeI	CATG	2 cut(s)	296, 520
FalI	AAGNNNNNCTT	4 cut(s)	212, 244, 764, 796
FatI	CATG	2 cut(s)	292, 516
FbaI	TGATCA	2 cut(s)	622, 762
Fnu4HI	GCNGC	2 cut(s)	267, 405
FriOI	GRGCYC	1 cut(s)	789
Fsp4HI	GCNGC	2 cut(s)	267, 405
GluI	GCNGC	2 cut(s)	267, 405
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	3 cut(s)	74, 608, 814
HapII	CCGG	1 cut(s)	811
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	296, 520
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	19, 378, 629
HpaII	CCGG	1 cut(s)	811
HphI	GGTGA	3 cut(s)	649, 757, 800
Hpy166II	GTNNAC	2 cut(s)	57, 640
Hpy188I	TCNGA	5 cut(s)	219, 248, 354, 802, 824
Hpy188III	TCNNGA	3 cut(s)	100, 579, 626
Hpy8I	GTNNAC	2 cut(s)	57, 640
Hpy99I	CGWCG	4 cut(s)	10, 80, 114, 175
HpyAV	CCTTC	2 cut(s)	733, 741
HpyCH4III	ACNGT	1 cut(s)	490
HpyCH4IV	ACGT	2 cut(s)	65, 170
HpyCH4V	TGCA	5 cut(s)	269, 332, 407, 599, 613
HpyF10VI	GCNNNNNNNGC	1 cut(s)	605
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	2 cut(s)	65, 170
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	296, 520
Ksp22I	TGATCA	2 cut(s)	622, 762
Kzo9I	GATC	5 cut(s)	30, 571, 622, 694, 762
LmnI	GCTCC	2 cut(s)	212, 784
LpnPI	CCDG	5 cut(s)	11, 32, 273, 494, 521
Lsp1109I	GCAGC	2 cut(s)	253, 391
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	2 cut(s)	65, 170
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	5 cut(s)	32, 573, 624, 696, 764
MboI	GATC	5 cut(s)	30, 571, 622, 694, 762
MboII	GAAGA	3 cut(s)	454, 673, 689
MhlI	GDGCHC	2 cut(s)	539, 789
MluCI	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
MnlI	CCTC	5 cut(s)	99, 202, 338, 575, 769
MseI	TTAA	1 cut(s)	548
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	811
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	605
NdeII	GATC	5 cut(s)	30, 571, 622, 694, 762
NlaIII	CATG	2 cut(s)	296, 520
NlaIV	GGNNCC	1 cut(s)	786
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 167
PfeI	GAWTC	3 cut(s)	19, 378, 629
PkrI	GCNGC	2 cut(s)	268, 406
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	786
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	227
RsaNI	GTAC	1 cut(s)	226
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	2 cut(s)	267, 405
Sau3AI	GATC	5 cut(s)	30, 571, 622, 694, 762
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	539, 789
SetI	ASST	6 cut(s)	27, 68, 173, 209, 262, 268
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	2 cut(s)	261, 405
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
SsiI	CCGC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	1 cut(s)	490
TaiI	ACGT	2 cut(s)	68, 173
TaqI	TCGA	3 cut(s)	17, 112, 138
TasI	AATT	6 cut(s)	13, 103, 154, 312, 327, 471
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	19, 378, 629
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	672
TseI	GCWGC	2 cut(s)	266, 404
TspDTI	ATGAA	5 cut(s)	281, 354, 514, 533, 694
TspGWI	ACGGA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	672
XapI	RAATTY	2 cut(s)	13, 103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.