Rorug02G0573400

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0001326
Physical Location & Seq
Forward (+)
69920441 .. 69921958
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0573400.1

Sequence Viewer

Length: 741 bp
ATGAGCAAGCCACATATTATAGCCATTCCTTACCCAGCTCAAGGCCATGTAATTCCCTTGATGGGGTTATCACAGTGCTTAGTGAATGAAGGCTTCAAAGTCACATTTGTGAACACAGATTTTAACCACAAGCGAGTCATGAATTCCTTGGCTGTTGAAACTCATGAAAGGGATGATCAGGTTCGTCTGGTTTCAATTCCGGATGGCTTAGAACCATGGGAGGACAGAAATGAGCTAGGGCAGCTATGTGAAGCAATACTTAGAGTCATGCCTGGGAAGCTGGAGGAGCTCATAGAGAAGATCAAGGAAGAAGAAGGTGATAAAGTTGCCTGTATCATTGCTGATGAGAGTAACGGATGGGCTCTGAAAGTAGCAGAGAAAATGCAAATAAAGAAAGTTGCCTTCTGGCCTGCGTCAGCTGCATTTTTGGCACTGGAGTTTTGTATCCCAAAATTAATTCAAGAAGGAATCATTGATGATGATGGATCTGCATTAAAAAGGCAGATGATCAACTTAGCACCAAACATGCCCACCATGAAAACTGATCAAGACTTAGTTAACAACAAGACTGTGAAATTGGCTGACTGGGTTGTATCCAACTCAGCATTCGACCTAGAACCAGGAGCATTCACCTTGGCACCACAGATTTTACCAATAGGCCCGCTTTTGGCAAGCAATCGCCTTGATGATTCAGCTGGAAACTTCTGGCCACCAGACTCAACTTGCTTAGAATGGCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

246

Amino Acids

27.34

Weight (kDa)

4.75

Isoelectric Point (pI)

36.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 637
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 662
AclWI GGATC 1 cut(s) 493
AcoI YGGCCR 1 cut(s) 707
AcsI RAATTY 1 cut(s) 142
AfiI CCNNNNNNNGG 4 cut(s) 41, 62, 63, 667
AgsI TTSAA 4 cut(s) 97, 158, 195, 461
AjnI CCWGG 2 cut(s) 271, 619
AjuI GAANNNNNNNTTGG 2 cut(s) 590, 622
AleI CACNNNNGTG 1 cut(s) 107
AluBI AGCT 7 cut(s) 38, 235, 244, 280, 289, 419, 695
AluI AGCT 7 cut(s) 38, 235, 244, 280, 289, 419, 695
Alw21I GWGCWC 1 cut(s) 291
AlwI GGATC 1 cut(s) 493
Aor13HI TCCGGA 1 cut(s) 199
AoxI GGCC 4 cut(s) 43, 407, 658, 707
ApeKI GCWGC 2 cut(s) 241, 419
ApoI RAATTY 1 cut(s) 142
AseI ATTAAT 1 cut(s) 455
AspS9I GGNCC 1 cut(s) 659
AsuHPI GGTGA 2 cut(s) 329, 622
BalI TGGCCA 1 cut(s) 709
BanI GGYRCC 1 cut(s) 637
BanII GRGCYC 2 cut(s) 291, 364
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 2 cut(s) 253, 406
BccI CCATC 4 cut(s) 55, 197, 351, 476
BciT130I CCWGG 2 cut(s) 273, 621
BciVI GTATCC 2 cut(s) 455, 604
BclI TGATCA 3 cut(s) 175, 507, 544
BfaI CTAG 2 cut(s) 236, 614
BfuI GTATCC 2 cut(s) 455, 604
BisI GCNGC 2 cut(s) 242, 420
BlsI GCNGC 2 cut(s) 243, 421
Bme1390I CCNGG 2 cut(s) 273, 621
BmgT120I GGNCC 1 cut(s) 659
BmiI GGNNCC 1 cut(s) 639
BmrFI CCNGG 2 cut(s) 273, 621
BmrI ACTGGG 1 cut(s) 595
BmuI ACTGGG 1 cut(s) 595
BpmI CTGGAG 2 cut(s) 302, 455
BpuEI CTTGAG 1 cut(s) 24
BsaJI CCNNGG 4 cut(s) 147, 215, 272, 633
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 4 cut(s) 41, 62, 63, 667
Bse1I ACTGG 2 cut(s) 438, 590
Bse3DI GCAATG 1 cut(s) 336
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 2 cut(s) 273, 621
BseDI CCNNGG 4 cut(s) 147, 215, 272, 633
BseGI GGATG 3 cut(s) 178, 208, 362
BseLI CCNNNNNNNGG 4 cut(s) 41, 62, 63, 667
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 615
BseNI ACTGG 2 cut(s) 438, 590
BseRI GAGGAG 1 cut(s) 299
BseXI GCAGC 2 cut(s) 253, 406
BseYI CCCAGC 1 cut(s) 34
BshFI GGCC 4 cut(s) 45, 409, 660, 709
BshNI GGYRCC 1 cut(s) 637
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 1 cut(s) 200
BslI CCNNNNNNNGG 4 cut(s) 41, 62, 63, 667
BsmI GAATGC 2 cut(s) 605, 626
BsnI GGCC 4 cut(s) 45, 409, 660, 709
Bsp1286I GDGCHC 2 cut(s) 291, 364
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 5 cut(s) 175, 300, 485, 507, 544
Bsp19I CCATGG 1 cut(s) 215
BspACI CCGC 1 cut(s) 662
BspANI GGCC 4 cut(s) 45, 409, 660, 709
BspCNI CTCAG 1 cut(s) 614
BspEI TCCGGA 1 cut(s) 199
BspHI TCATGA 2 cut(s) 138, 163
BspLI GGNNCC 1 cut(s) 639
BspPI GGATC 1 cut(s) 493
BspT107I GGYRCC 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 336
BsrI ACTGG 2 cut(s) 438, 590
BssECI CCNNGG 4 cut(s) 147, 215, 272, 633
BssMI GATC 5 cut(s) 175, 300, 485, 507, 544
BssT1I CCWWGG 3 cut(s) 147, 215, 633
Bst2UI CCWGG 2 cut(s) 273, 621
Bst4CI ACNGT 2 cut(s) 75, 571
BstC8I GCNNGC 4 cut(s) 8, 411, 662, 673
BstDEI CTNAG 7 cut(s) 79, 208, 260, 514, 553, 601, 727
BstDSI CCRYGG 1 cut(s) 215
BstF5I GGATG 3 cut(s) 178, 208, 362
BstKTI GATC 5 cut(s) 178, 303, 488, 510, 547
BstMBI GATC 5 cut(s) 175, 300, 485, 507, 544
BstMWI GCNNNNNNNGC 5 cut(s) 241, 277, 286, 419, 428
BstNI CCWGG 2 cut(s) 273, 621
BstNSI RCATGY 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 271, 619
BstV1I GCAGC 2 cut(s) 253, 406
BstX2I RGATCY 1 cut(s) 485
BstYI RGATCY 1 cut(s) 485
BsuI GTATCC 2 cut(s) 455, 604
BsuRI GGCC 4 cut(s) 45, 409, 660, 709
BtgI CCRYGG 1 cut(s) 215
BtsCI GGATG 3 cut(s) 178, 208, 362
BtsIMutI CAGTG 2 cut(s) 80, 431
Cac8I GCNNGC 4 cut(s) 8, 411, 662, 673
CciI TCATGA 2 cut(s) 138, 163
Cfr13I GGNCC 1 cut(s) 659
CseI GACGC 1 cut(s) 402
CviAII CATG 7 cut(s) 47, 139, 164, 216, 268, 526, 535
DdeI CTNAG 7 cut(s) 79, 208, 260, 514, 553, 601, 727
DpnI GATC 5 cut(s) 177, 302, 487, 509, 546
DpnII GATC 5 cut(s) 175, 300, 485, 507, 544
EaeI YGGCCR 1 cut(s) 707
Ecl136II GAGCTC 1 cut(s) 289
Eco130I CCWWGG 3 cut(s) 147, 215, 633
Eco24I GRGCYC 2 cut(s) 291, 364
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoRI GAATTC 1 cut(s) 142
EcoRII CCWGG 2 cut(s) 271, 619
EcoT14I CCWWGG 3 cut(s) 147, 215, 633
EcoT38I GRGCYC 2 cut(s) 291, 364
ErhI CCWWGG 3 cut(s) 147, 215, 633
FaeI CATG 7 cut(s) 50, 142, 167, 219, 271, 529, 538
FalI AAGNNNNNCTT 2 cut(s) 243, 275
FatI CATG 7 cut(s) 46, 138, 163, 215, 267, 525, 534
FauI CCCGC 1 cut(s) 669
FbaI TGATCA 3 cut(s) 175, 507, 544
Fnu4HI GCNGC 2 cut(s) 242, 420
FokI GGATG 3 cut(s) 185, 215, 369
FriOI GRGCYC 2 cut(s) 291, 364
Fsp4HI GCNGC 2 cut(s) 242, 420
FspBI CTAG 2 cut(s) 236, 614
GluI GCNGC 2 cut(s) 242, 420
GsaI CCCAGC 1 cut(s) 38
GsuI CTGGAG 2 cut(s) 302, 455
HaeIII GGCC 4 cut(s) 45, 409, 660, 709
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 402
Hin1II CATG 7 cut(s) 50, 142, 167, 219, 271, 529, 538
HincII GTYRAC 1 cut(s) 559
HindII GTYRAC 1 cut(s) 559
HinfI GANTC 5 cut(s) 135, 264, 468, 689, 716
HpaI GTTAAC 1 cut(s) 559
HpaII CCGG 1 cut(s) 200
HphI GGTGA 2 cut(s) 329, 622
Hpy166II GTNNAC 2 cut(s) 112, 559
Hpy188I TCNGA 1 cut(s) 366
Hpy188III TCNNGA 5 cut(s) 139, 164, 200, 461, 548
Hpy8I GTNNAC 2 cut(s) 112, 559
HpyAV CCTTC 4 cut(s) 83, 308, 412, 458
HpyCH4III ACNGT 2 cut(s) 75, 571
HpyCH4V TGCA 3 cut(s) 385, 422, 491
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 277, 286, 419, 428
HpyF3I CTNAG 7 cut(s) 79, 208, 260, 514, 553, 601, 727
Hsp92II CATG 7 cut(s) 50, 142, 167, 219, 271, 529, 538
Kpn2I TCCGGA 1 cut(s) 199
Ksp22I TGATCA 3 cut(s) 175, 507, 544
KspAI GTTAAC 1 cut(s) 559
Kzo9I GATC 5 cut(s) 175, 300, 485, 507, 544
LmnI GCTCC 2 cut(s) 286, 623
Lsp1109I GCAGC 2 cut(s) 253, 406
MaeI CTAG 2 cut(s) 236, 614
MaeIII GTNAC 2 cut(s) 100, 350
MalI GATC 5 cut(s) 177, 302, 487, 509, 546
MboI GATC 5 cut(s) 175, 300, 485, 507, 544
MboII GAAGA 3 cut(s) 310, 320, 323
MflI RGATCY 1 cut(s) 485
MhlI GDGCHC 2 cut(s) 291, 364
MlsI TGGCCA 1 cut(s) 709
MluCI AATT 6 cut(s) 51, 142, 195, 452, 456, 575
MluNI TGGCCA 1 cut(s) 709
MlyI GAGTC 3 cut(s) 144, 273, 710
MmeI TCCRAC 1 cut(s) 621
MnlI CCTC 2 cut(s) 214, 277
Mox20I TGGCCA 1 cut(s) 709
MroI TCCGGA 1 cut(s) 199
MscI TGGCCA 1 cut(s) 709
MseI TTAA 4 cut(s) 123, 455, 494, 558
MslI CAYNNNNRTG 1 cut(s) 107
Msp20I TGGCCA 1 cut(s) 709
MspA1I CMGCKG 2 cut(s) 419, 695
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 273, 621
Mva1269I GAATGC 2 cut(s) 605, 626
MvaI CCWGG 2 cut(s) 273, 621
MwoI GCNNNNNNNGC 5 cut(s) 241, 277, 286, 419, 428
NcoI CCATGG 1 cut(s) 215
NdeII GATC 5 cut(s) 175, 300, 485, 507, 544
NlaIII CATG 7 cut(s) 50, 142, 167, 219, 271, 529, 538
NlaIV GGNNCC 1 cut(s) 639
NmuCI GTSAC 1 cut(s) 100
NspI RCATGY 1 cut(s) 529
OliI CACNNNNGTG 1 cut(s) 107
PagI TCATGA 2 cut(s) 138, 163
PctI GAATGC 2 cut(s) 605, 626
PfeI GAWTC 2 cut(s) 468, 689
PkrI GCNGC 2 cut(s) 243, 421
PleI GAGTC 3 cut(s) 143, 272, 710
PpsI GAGTC 3 cut(s) 143, 272, 710
PshBI ATTAAT 1 cut(s) 455
Psp124BI GAGCTC 1 cut(s) 291
Psp6I CCWGG 2 cut(s) 271, 619
PspFI CCCAGC 1 cut(s) 34
PspGI CCWGG 2 cut(s) 271, 619
PspN4I GGNNCC 1 cut(s) 639
PspPI GGNCC 1 cut(s) 659
PsuI RGATCY 1 cut(s) 485
PvuII CAGCTG 2 cut(s) 419, 695
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 4 cut(s) 123, 455, 494, 558
SatI GCNGC 2 cut(s) 242, 420
Sau3AI GATC 5 cut(s) 175, 300, 485, 507, 544
Sau96I GGNCC 1 cut(s) 659
SchI GAGTC 3 cut(s) 144, 273, 710
ScrFI CCNGG 2 cut(s) 273, 621
SduI GDGCHC 2 cut(s) 291, 364
SmiMI CAYNNNNRTG 1 cut(s) 107
SmlI CTYRAG 1 cut(s) 39
SmoI CTYRAG 1 cut(s) 39
Sse9I AATT 6 cut(s) 51, 142, 195, 452, 456, 575
SsiI CCGC 1 cut(s) 662
SspMI CTAG 2 cut(s) 236, 614
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 2 cut(s) 271, 619
StyI CCWWGG 3 cut(s) 147, 215, 633
TaaI ACNGT 2 cut(s) 75, 571
TaqI TCGA 1 cut(s) 609
TasI AATT 6 cut(s) 51, 142, 195, 452, 456, 575
TfiI GAWTC 2 cut(s) 468, 689
Tru1I TTAA 4 cut(s) 123, 455, 494, 558
Tru9I TTAA 4 cut(s) 123, 455, 494, 558
TscAI CASTG 2 cut(s) 80, 438
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 2 cut(s) 241, 419
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 4 cut(s) 102, 155, 180, 551
TspGWI ACGGA 1 cut(s) 369
TspRI CASTG 2 cut(s) 80, 438
VspI ATTAAT 1 cut(s) 455
XapI RAATTY 1 cut(s) 142
XceI RCATGY 1 cut(s) 529
XspI CTAG 2 cut(s) 236, 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.