Prupe.3G298300_v2.0.a1

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0001326
Physical Location & Seq
Forward (+)
26418649 .. 26427081
8433 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G298300.1

Sequence Viewer

Length: 846 bp
ATGGCGTCGTGGAATTCGATTCAGCTGGAAATCACATACAGAGTTTTGGGATGGATGGGTTTTGCATGTTGGTCCGTCGGTGGCTACCCACAAGTCATATTGAATTTCCGCAGGAAAAGCGTTGTGGGATTGAGCTTCGATTTCGTGTTGCTGAGTTTGACAAAGCAGTCTTCCTATCTCATATACAACGCCTCTCTCTACTTCAGCTCCGCCGTTCAAAAGCAGTACTGGGAGAAATACGGCTATGGACAGATGATCCCTGTAGCAGTAAATGATGTTGCTTTCTCAGCTCACGCTGTTTTATTGACAGCATTTGTTTTGTTACAAATTGCAATCTATGAACGAGGAACTCAGAAGGTGTCCAAGATTGCCATCGGAATTGTCGTTGCAGTGTGGTCAGGCGCTGCAGTTTGTGTTTTCGTAGCTTTGCCAACCCATTCTTGGCTTTGGCTGATTAATATTTTCAACTCAATTCAAGTTTGCATGACAGTCGTCAAATATACTCCCCAGGCATTCCTGAACTTCGTGCGGAAGAGCACAGATGGATATAGCCTTGGCTCTTACTTGCTTGATTTTTCTGGAGGGGTCACAAATTATGCACAAATGACTGTGCTTGCTATAGATCAAGATTCTTGGGTGAACTTTTATGGAAACATGGGGAAAGTACTGCTATCTTTGATATCTATATTCTTTGACCTTGTCTTCATGTGTCAACGCTTCCTGCTGTATCCTTCAAAGAAAGCACCCATCTCTCCTCCTCCTCCTCAAATCATCAGCAAGGACAAGGAGAGCTTGGAGCCACTTCTCCAGTCTTCATCAGATCACCCACTCAAACACACTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

282

Amino Acids

31.5

Weight (kDa)

9.05

Isoelectric Point (pI)

34.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 166
AciI CCGC 3 cut(s) 109, 210, 529
AclWI GGATC 1 cut(s) 250
AcsI RAATTY 2 cut(s) 13, 103
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 227, 666
AfiI CCNNNNNNNGG 1 cut(s) 441
AgsI TTSAA 5 cut(s) 103, 218, 466, 476, 735
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 6 cut(s) 25, 135, 207, 290, 425, 792
AluI AGCT 6 cut(s) 25, 135, 207, 290, 425, 792
Alw21I GWGCWC 1 cut(s) 539
AlwI GGATC 1 cut(s) 250
AlwNI CAGNNNCTG 1 cut(s) 404
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 2 cut(s) 13, 103
ArsI GACNNNNNNTTYG 1 cut(s) 825
AseI ATTAAT 1 cut(s) 456
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 2 cut(s) 649, 815
AvaII GGWCC 1 cut(s) 72
BbsI GAAGAC 3 cut(s) 162, 694, 804
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 1 cut(s) 391
BccI CCATC 5 cut(s) 45, 49, 380, 536, 755
BceAI ACGGC 2 cut(s) 197, 256
BcgI CGANNNNNNTGC 2 cut(s) 472, 506
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 738
BfmI CTRYAG 3 cut(s) 261, 405, 618
BfoI RGCGCY 1 cut(s) 405
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
BmcAI AGTACT 2 cut(s) 227, 666
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 798
BmrFI CCNGG 1 cut(s) 509
BmrI ACTGGG 1 cut(s) 238
BmuI ACTGGG 1 cut(s) 238
BoxI GACNNNNGTC 1 cut(s) 491
BpiI GAAGAC 3 cut(s) 162, 694, 804
BpmI CTGGAG 2 cut(s) 600, 791
BsaBI GATNNNNATC 1 cut(s) 371
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 507, 553
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 441
Bse1I ACTGG 2 cut(s) 233, 808
Bse8I GATNNNNATC 1 cut(s) 371
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 507, 553
BseGI GGATG 2 cut(s) 56, 60
BseJI GATNNNNATC 1 cut(s) 371
BseLI CCNNNNNNNGG 1 cut(s) 441
BseMII CTCAG 3 cut(s) 143, 300, 365
BseNI ACTGG 2 cut(s) 233, 808
BseRI GAGGAG 4 cut(s) 744, 747, 750, 753
BseXI GCAGC 1 cut(s) 391
BsiHKAI GWGCWC 1 cut(s) 539
BslI CCNNNNNNNGG 1 cut(s) 441
BsmI GAATGC 1 cut(s) 512
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 3 cut(s) 255, 622, 820
BspACI CCGC 3 cut(s) 109, 210, 529
BspCNI CTCAG 3 cut(s) 144, 299, 364
BspLI GGNNCC 1 cut(s) 798
BspMAI CTGCAG 1 cut(s) 409
BspPI GGATC 1 cut(s) 250
BspQI GCTCTTC 1 cut(s) 527
BsrI ACTGG 2 cut(s) 233, 808
BssECI CCNNGG 2 cut(s) 507, 553
BssMI GATC 3 cut(s) 255, 622, 820
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 553
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 3 cut(s) 490, 610, 841
Bst6I CTCTTC 1 cut(s) 527
BstACI GRCGYC 1 cut(s) 5
BstC8I GCNNGC 1 cut(s) 615
BstDEI CTNAG 3 cut(s) 152, 286, 351
BstF5I GGATG 2 cut(s) 56, 60
BstH2I RGCGCY 1 cut(s) 405
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 3 cut(s) 258, 625, 823
BstMBI GATC 3 cut(s) 255, 622, 820
BstMWI GCNNNNNNNGC 2 cut(s) 117, 287
BstNI CCWGG 1 cut(s) 509
BstNSI RCATGY 1 cut(s) 69
BstPAI GACNNNNGTC 1 cut(s) 491
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 3 cut(s) 261, 405, 618
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 3 cut(s) 162, 694, 804
BsuI GTATCC 1 cut(s) 738
BtsCI GGATG 2 cut(s) 56, 60
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 2 cut(s) 396, 837
Cac8I GCNNGC 1 cut(s) 615
CaiI CAGNNNCTG 1 cut(s) 404
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 2 cut(s) 226, 665
CviAII CATG 4 cut(s) 66, 484, 655, 706
CviQI GTAC 2 cut(s) 226, 665
DdeI CTNAG 3 cut(s) 152, 286, 351
DpnI GATC 3 cut(s) 257, 624, 822
DpnII GATC 3 cut(s) 255, 622, 820
DrdI GACNNNNNNGTC 1 cut(s) 166
DseDI GACNNNNNNGTC 1 cut(s) 166
Eam1104I CTCTTC 1 cut(s) 527
EarI CTCTTC 1 cut(s) 527
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 553
Eco32I GATATC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 507
EcoRV GATATC 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 553
ErhI CCWWGG 1 cut(s) 553
FaeI CATG 4 cut(s) 69, 487, 658, 709
FalI AAGNNNNNCTT 2 cut(s) 776, 808
FatI CATG 4 cut(s) 65, 483, 654, 705
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 63, 67
Fsp4HI GCNGC 1 cut(s) 405
GlaI GCGC 1 cut(s) 403
GluI GCNGC 1 cut(s) 405
GsuI CTGGAG 2 cut(s) 600, 791
HaeII RGCGCY 1 cut(s) 405
HhaI GCGC 1 cut(s) 404
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 69, 487, 658, 709
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HincII GTYRAC 1 cut(s) 713
HindII GTYRAC 1 cut(s) 713
HinfI GANTC 2 cut(s) 19, 629
HphI GGTGA 2 cut(s) 649, 815
Hpy166II GTNNAC 2 cut(s) 640, 713
Hpy188I TCNGA 4 cut(s) 354, 377, 820, 845
Hpy188III TCNNGA 3 cut(s) 517, 579, 626
Hpy8I GTNNAC 2 cut(s) 640, 713
Hpy99I CGWCG 2 cut(s) 10, 80
HpyAV CCTTC 2 cut(s) 349, 741
HpyCH4III ACNGT 3 cut(s) 490, 610, 841
HpyCH4V TGCA 6 cut(s) 65, 332, 389, 407, 483, 599
HpyF10VI GCNNNNNNNGC 2 cut(s) 117, 287
HpyF3I CTNAG 3 cut(s) 152, 286, 351
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 69, 487, 658, 709
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 3 cut(s) 255, 622, 820
LguI GCTCTTC 1 cut(s) 527
LmnI GCTCC 2 cut(s) 212, 796
Lsp1109I GCAGC 1 cut(s) 391
MaeIII GTNAC 2 cut(s) 321, 586
MalI GATC 3 cut(s) 257, 624, 822
MboI GATC 3 cut(s) 255, 622, 820
MboII GAAGA 4 cut(s) 162, 544, 694, 804
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 6 cut(s) 13, 103, 327, 378, 471, 592
MnlI CCTC 7 cut(s) 202, 338, 575, 765, 768, 771, 774
MseI TTAA 1 cut(s) 456
MspA1I CMGCKG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 512
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 2 cut(s) 117, 287
NdeII GATC 3 cut(s) 255, 622, 820
NlaIII CATG 4 cut(s) 69, 487, 658, 709
NlaIV GGNNCC 1 cut(s) 798
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 1 cut(s) 69
PciSI GCTCTTC 1 cut(s) 527
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 381
PctI GAATGC 1 cut(s) 512
PfeI GAWTC 2 cut(s) 19, 629
PflFI GACNNNGTC 1 cut(s) 698
PkrI GCNGC 1 cut(s) 406
PshAI GACNNNNGTC 1 cut(s) 491
PshBI ATTAAT 1 cut(s) 456
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 798
PspPI GGNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 409
PstNI CAGNNNCTG 1 cut(s) 404
PsyI GACNNNGTC 1 cut(s) 698
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 2 cut(s) 227, 666
RsaNI GTAC 2 cut(s) 226, 665
SapI GCTCTTC 1 cut(s) 527
SaqAI TTAA 1 cut(s) 456
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 3 cut(s) 255, 622, 820
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 2 cut(s) 227, 666
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 539
SetI ASST 8 cut(s) 27, 137, 209, 292, 360, 427, 699, 794
SfcI CTRYAG 3 cut(s) 261, 405, 618
SinI GGWCC 1 cut(s) 72
Sse9I AATT 6 cut(s) 13, 103, 327, 378, 471, 592
SsiI CCGC 3 cut(s) 109, 210, 529
SspI AATATT 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 553
TaaI ACNGT 3 cut(s) 490, 610, 841
TaqI TCGA 2 cut(s) 17, 138
TasI AATT 6 cut(s) 13, 103, 327, 378, 471, 592
TatI WGTACW 2 cut(s) 225, 664
TfiI GAWTC 2 cut(s) 19, 629
Tru1I TTAA 1 cut(s) 456
Tru9I TTAA 1 cut(s) 456
TscAI CASTG 2 cut(s) 396, 844
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 1 cut(s) 404
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 3 cut(s) 354, 694, 804
TspGWI ACGGA 1 cut(s) 64
TspRI CASTG 2 cut(s) 396, 844
Tth111I GACNNNGTC 1 cut(s) 698
VpaK11BI GGWCC 1 cut(s) 72
VspI ATTAAT 1 cut(s) 456
XapI RAATTY 2 cut(s) 13, 103
XceI RCATGY 1 cut(s) 69
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
ZrmI AGTACT 2 cut(s) 227, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.