Rh2BG664500

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0001326
Physical Location & Seq
Forward (+)
87814058 .. 87816373
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG664500.1

Sequence Viewer

Length: 843 bp
ATGACGTCGTGGAATTCAACTCCGATGGAAGTGACATACGAAGTTCTGGGATGGATAGCTTTCGTGTCTTGGTCCATCAGCTTCTACCCTCAAGTCATTTCGAATTTCCGGAGGAAAAGTGTTGTGGGGTTGAACTTCGATTTTGTGGTACTGAATTTGACAAAGCATTCTTCATATCTGATCTACAATGCGACTCTCTACTTTAGCTCCGCAGTTCAGAAGCAGTACTTCCACAAGTATGGCTCCAAACAGATGATACCTGTGGCAGCGAATGATGTTGCATTCTCTACTCATGCTGTTTTATTGACCGCGCTGACCCTGATTCAAATTGCAGTCTATGAACGTGGAAATCAGAAGCTGTCGAAAATTTCCATTGGAATCGTTGTTGCTGTGTGGCTAGGTGGTGCGGTTTGCTTTTTCATAGCTTTGTCAAACCATTCTTGGCTTTGGCTCATTTCCGTTTTCAACCTAATTCAAGTATGTATGACAGTCATCAAATACATTCCCCAGGCAATCATGAACTTCATGCGGAAGAACACAGATGGGTTCAGCATTGGCAATATTTTACTTGACTTTACCGGAGGCCTCACAAGTTATGCACAAATGGCTGTGCAGTCTATAGATCAACATTCTTGGGTGAACTTCTATGGAAATATAGGGAAGACACTTCTCTCTTTGGTCTCGATATTCTTCGACCTTCTATTCATGTGTCAACATTTCCTGCTGTATCCTGCCAAGAAAGCACAGCAGATACCCCCCAACAGCAGTGCCAGTGAGGAAAGAACAGGGCCTATTGGCAAATCTCCTGATCATCATTACCCAGCACCTCCGGGGAATGTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

280

Amino Acids

31.42

Weight (kDa)

9.15

Isoelectric Point (pI)

31.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 14 - 69 1.9e-18 PQ loop repeat
PQ-loop PF04193 152 - 208 2.4e-15 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 8
AccII CGCG 1 cut(s) 311
AccIII TCCGGA 1 cut(s) 108
AciI CCGC 4 cut(s) 210, 309, 407, 529
AcsI RAATTY 4 cut(s) 13, 103, 154, 366
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 150, 227
AgsI TTSAA 5 cut(s) 18, 133, 326, 466, 476
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 5 cut(s) 59, 81, 207, 358, 425
AluI AGCT 5 cut(s) 59, 81, 207, 358, 425
Alw26I GTCTC 1 cut(s) 685
AlwNI CAGNNNCTG 1 cut(s) 358
Aor13HI TCCGGA 1 cut(s) 108
AoxI GGCC 2 cut(s) 583, 788
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 4 cut(s) 13, 103, 154, 366
AspLEI GCGC 1 cut(s) 313
AspS9I GGNCC 2 cut(s) 72, 788
AsuC2I CCSGG 1 cut(s) 831
AsuHPI GGTGA 1 cut(s) 649
AsuII TTCGAA 1 cut(s) 101
AvaII GGWCC 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 668
BbvI GCAGC 1 cut(s) 278
BccI CCATC 4 cut(s) 19, 45, 83, 536
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 1 cut(s) 808
BcnI CCSGG 1 cut(s) 831
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 1 cut(s) 398
BfmI CTRYAG 1 cut(s) 618
BfuI GTATCC 1 cut(s) 738
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 509, 831
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 2 cut(s) 72, 788
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 2 cut(s) 509, 831
BpiI GAAGAC 1 cut(s) 668
Bpu14I TTCGAA 1 cut(s) 101
BpuEI CTTGAG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 831
BsaHI GRCGYC 1 cut(s) 5
BsaI GGTCTC 1 cut(s) 685
BsaJI CCNNGG 2 cut(s) 507, 830
BsaWI WCCGGW 2 cut(s) 108, 578
BsaXI ACNNNNNCTCC 4 cut(s) 103, 133, 191, 221
Bse1I ACTGG 1 cut(s) 771
BseAI TCCGGA 1 cut(s) 108
BseBI CCWGG 1 cut(s) 509
BseDI CCNNGG 2 cut(s) 507, 830
BseGI GGATG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 771
BseXI GCAGC 1 cut(s) 278
BseYI CCCAGC 1 cut(s) 820
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 1 cut(s) 311
BshFI GGCC 2 cut(s) 585, 790
BsiSI CCGG 3 cut(s) 109, 579, 830
BsmAI GTCTC 1 cut(s) 685
BsmI GAATGC 2 cut(s) 166, 281
BsnI GGCC 2 cut(s) 585, 790
Bso31I GGTCTC 1 cut(s) 685
Bsp119I TTCGAA 1 cut(s) 101
Bsp13I TCCGGA 1 cut(s) 108
Bsp143I GATC 3 cut(s) 180, 622, 808
BspACI CCGC 4 cut(s) 210, 309, 407, 529
BspANI GGCC 2 cut(s) 585, 790
BspEI TCCGGA 1 cut(s) 108
BspFNI CGCG 1 cut(s) 311
BspHI TCATGA 1 cut(s) 516
BspLI GGNNCC 1 cut(s) 244
BspT104I TTCGAA 1 cut(s) 101
BspTNI GGTCTC 1 cut(s) 685
BsrI ACTGG 1 cut(s) 771
BssECI CCNNGG 2 cut(s) 507, 830
BssMI GATC 3 cut(s) 180, 622, 808
BssNI GRCGYC 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 1 cut(s) 490
BstACI GRCGYC 1 cut(s) 5
BstBI TTCGAA 1 cut(s) 101
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 1 cut(s) 311
BstHHI GCGC 1 cut(s) 313
BstKTI GATC 3 cut(s) 183, 625, 811
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 3 cut(s) 180, 622, 808
BstMWI GCNNNNNNNGC 2 cut(s) 605, 740
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 2 cut(s) 507, 829
BstSFI CTRYAG 1 cut(s) 618
BstUI CGCG 1 cut(s) 311
BstV1I GCAGC 1 cut(s) 278
BstV2I GAAGAC 1 cut(s) 668
BstXI CCANNNNNNTGG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 738
BsuRI GGCC 2 cut(s) 585, 790
BtsCI GGATG 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 772
BtsIMutI CAGTG 2 cut(s) 772, 778
CaiI CAGNNNCTG 1 cut(s) 358
CciI TCATGA 1 cut(s) 516
CfoI GCGC 1 cut(s) 313
Cfr13I GGNCC 2 cut(s) 72, 788
Csp6I GTAC 2 cut(s) 149, 226
CviAII CATG 4 cut(s) 293, 517, 526, 706
CviQI GTAC 2 cut(s) 149, 226
DpnI GATC 3 cut(s) 182, 624, 810
DpnII GATC 3 cut(s) 180, 622, 808
Eco147I AGGCCT 1 cut(s) 585
Eco31I GGTCTC 1 cut(s) 685
Eco47I GGWCC 1 cut(s) 72
EcoO109I RGGNCCY 1 cut(s) 788
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 507
FaeI CATG 4 cut(s) 296, 520, 529, 709
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 4 cut(s) 292, 516, 525, 705
FbaI TGATCA 1 cut(s) 808
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 398
GlaI GCGC 1 cut(s) 312
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 824
HaeIII GGCC 2 cut(s) 585, 790
HapII CCGG 3 cut(s) 109, 579, 830
HhaI GCGC 1 cut(s) 313
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 4 cut(s) 296, 520, 529, 709
Hin6I GCGC 1 cut(s) 311
HinP1I GCGC 1 cut(s) 311
HincII GTYRAC 1 cut(s) 713
HindII GTYRAC 1 cut(s) 713
HinfI GANTC 3 cut(s) 193, 322, 378
HpaII CCGG 3 cut(s) 109, 579, 830
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 2 cut(s) 640, 713
Hpy188I TCNGA 4 cut(s) 24, 180, 219, 354
Hpy188III TCNNGA 4 cut(s) 109, 517, 682, 806
Hpy8I GTNNAC 2 cut(s) 640, 713
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 707
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 2 cut(s) 5, 343
HpyCH4V TGCA 4 cut(s) 281, 332, 599, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 605, 740
HpySE526I ACGT 2 cut(s) 5, 343
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 4 cut(s) 296, 520, 529, 709
HspAI GCGC 1 cut(s) 311
Kpn2I TCCGGA 1 cut(s) 108
Ksp22I TGATCA 1 cut(s) 808
Kzo9I GATC 3 cut(s) 180, 622, 808
LmnI GCTCC 2 cut(s) 212, 248
Lsp1109I GCAGC 1 cut(s) 278
MaeI CTAG 1 cut(s) 398
MaeII ACGT 2 cut(s) 5, 343
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 182, 624, 810
MboI GATC 3 cut(s) 180, 622, 808
MboII GAAGA 4 cut(s) 162, 544, 673, 682
MluCI AATT 6 cut(s) 13, 103, 154, 327, 366, 471
MlyI GAGTC 1 cut(s) 187
MnlI CCTC 6 cut(s) 99, 105, 575, 596, 769, 837
MroI TCCGGA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 237
MspI CCGG 3 cut(s) 109, 579, 830
MspR9I CCNGG 2 cut(s) 509, 831
Mva1269I GAATGC 2 cut(s) 166, 281
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 1 cut(s) 311
MwoI GCNNNNNNNGC 2 cut(s) 605, 740
NciI CCSGG 1 cut(s) 831
NdeII GATC 3 cut(s) 180, 622, 808
NlaIII CATG 4 cut(s) 296, 520, 529, 709
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 31
NspV TTCGAA 1 cut(s) 101
PagI TCATGA 1 cut(s) 516
PceI AGGCCT 1 cut(s) 585
PctI GAATGC 2 cut(s) 166, 281
PfeI GAWTC 2 cut(s) 322, 378
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 1 cut(s) 187
PpsI GAGTC 1 cut(s) 187
Psp6I CCWGG 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 820
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 72, 788
PstNI CAGNNNCTG 1 cut(s) 358
RsaI GTAC 2 cut(s) 150, 227
RsaNI GTAC 2 cut(s) 149, 226
RseI CAYNNNNRTG 1 cut(s) 237
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 3 cut(s) 180, 622, 808
Sau96I GGNCC 2 cut(s) 72, 788
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 2 cut(s) 509, 831
SfcI CTRYAG 1 cut(s) 618
SfuI TTCGAA 1 cut(s) 101
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 237
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 6 cut(s) 13, 103, 154, 327, 366, 471
SseBI AGGCCT 1 cut(s) 585
SsiI CCGC 4 cut(s) 210, 309, 407, 529
SspI AATATT 1 cut(s) 562
SspMI CTAG 1 cut(s) 398
StuI AGGCCT 1 cut(s) 585
StyD4I CCNGG 2 cut(s) 507, 829
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 2 cut(s) 8, 346
TaqI TCGA 5 cut(s) 101, 138, 362, 683, 693
TasI AATT 6 cut(s) 13, 103, 154, 327, 366, 471
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 2 cut(s) 322, 378
TscAI CASTG 2 cut(s) 772, 778
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 6 cut(s) 162, 354, 409, 514, 533, 694
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 2 cut(s) 772, 778
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 4 cut(s) 13, 103, 154, 366
XspI CTAG 1 cut(s) 398
ZraI GACGTC 1 cut(s) 6
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.