pycom17g01610

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001326
Physical Location & Seq
Reverse (-)
1054902 .. 1057125
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01610.4

Sequence Viewer

Length: 831 bp
ATGGCGTCGTGGAATTCGATTCCGCTGGAAGTCGCGTACCAAGTGCTGGGATGGACGGCGTTCGTGAGTTGGTCCTTCAGCTTCTACCCGCAAGTCATCTTGAATTTCCGCCGGAAAAGTGTTGTGGGATTGAGCATCGATTTCGTGGTGCTGAATTTGACGAAGCACTCGTCTTATCTCATCTACAACGCCACTCTTTACTTCAGCTCCGTCGTCCACAAGCAGTACTTTGAAAAGTACGGCGAAGGACAGATGATACCTGTGGCAGCAAATGATGTTGCTTTCTCTGCCCATGCTGTTTTGTTGACATCAATTACTCTGTTCCAAATTGCTATCTATGAACGCGGAAGCCAGAAGGTCTCCAAGATTGCCATAGGAATTGTCATTGCCGTGTGGTTAGGCGCCGCAGTTTGTTTTTTCATAGCTTTGCCAACCCATTCATGGCTTTGGCTAATTAACATTTTCAGCTTGATTCAAGTTTTCATGACGGTCATCAAATATACTCCCCAGGCATTCATGAACTTCATGAGGAAGAGCACAGATGGATTAAGCATTGGCTACTTTTCACTTGATTTTTCTGGAGGAGTCACAAATTATGCCCAAATGGCTGTGCAGTCTATAGATCAAGATTCGTGGGTGAACTTTTACGGAAACATGGGGAAGATGCTGCTATCTGTGATATCTGTGTCGTTTGACATTCTTTTCATGTGTCAACGTTTCCTGCTCTATCCTTCCGCCAAAGCGCTGATCCCTCCGAAACTCAGTAAGAAGAGCTCAGAGCCGCTGCTCCAATCTTCCGATCGATCATGGGTAAATAAACGCAGTCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

277

Amino Acids

31.16

Weight (kDa)

9.41

Isoelectric Point (pI)

36.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 401
AccB7I CCANNNNNTGG 1 cut(s) 46
AccII CGCG 2 cut(s) 35, 345
AciI CCGC 7 cut(s) 23, 89, 109, 345, 405, 735, 782
AclI AACGTT 1 cut(s) 715
AclWI GGATC 1 cut(s) 742
AcsI RAATTY 3 cut(s) 13, 103, 154
AcuI CTGAAG 2 cut(s) 61, 187
AcyI GRCGYC 2 cut(s) 5, 402
AfaI GTAC 3 cut(s) 38, 227, 239
AfeI AGCGCT 1 cut(s) 744
AfiI CCNNNNNNNGG 2 cut(s) 46, 441
AgsI TTSAA 3 cut(s) 103, 233, 476
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 5 cut(s) 81, 207, 425, 468, 774
AluI AGCT 5 cut(s) 81, 207, 425, 468, 774
Alw21I GWGCWC 2 cut(s) 539, 776
Alw26I GTCTC 1 cut(s) 364
AlwI GGATC 1 cut(s) 742
Aor51HI AGCGCT 1 cut(s) 744
ApeKI GCWGC 3 cut(s) 266, 667, 784
ApoI RAATTY 3 cut(s) 13, 103, 154
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AspLEI GCGC 2 cut(s) 404, 745
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 649
AvaII GGWCC 1 cut(s) 72
BanI GGYRCC 1 cut(s) 401
BanII GRGCYC 1 cut(s) 776
Bbv12I GWGCWC 2 cut(s) 539, 776
BbvI GCAGC 3 cut(s) 278, 654, 771
BccI CCATC 2 cut(s) 45, 536
BceAI ACGGC 3 cut(s) 72, 256, 374
BcgI CGANNNNNNTGC 2 cut(s) 124, 158
BciT130I CCWGG 1 cut(s) 509
BcoDI GTCTC 1 cut(s) 364
BfmI CTRYAG 1 cut(s) 618
BfoI RGCGCY 2 cut(s) 405, 746
BglI GCCNNNNNGGC 1 cut(s) 605
BisI GCNGC 5 cut(s) 267, 405, 668, 782, 785
BlsI GCNGC 5 cut(s) 268, 406, 669, 783, 786
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 509
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 403
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 2 cut(s) 144, 654
BpmI CTGGAG 1 cut(s) 600
Bsa29I ATCGAT 2 cut(s) 138, 802
BsaHI GRCGYC 2 cut(s) 5, 402
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 507
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 2 cut(s) 46, 441
Bse3DI GCAATG 1 cut(s) 384
BseBI CCWGG 1 cut(s) 509
BseCI ATCGAT 2 cut(s) 138, 802
BseDI CCNNGG 1 cut(s) 507
BseGI GGATG 1 cut(s) 56
BseLI CCNNNNNNNGG 2 cut(s) 46, 441
BseMI GCAATG 1 cut(s) 384
BseMII CTCAG 2 cut(s) 775, 789
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 3 cut(s) 278, 654, 771
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 632
Bsh1236I CGCG 2 cut(s) 35, 345
Bsh1285I CGRYCG 1 cut(s) 802
BshNI GGYRCC 1 cut(s) 401
BshVI ATCGAT 2 cut(s) 138, 802
BsiEI CGRYCG 1 cut(s) 802
BsiHKAI GWGCWC 2 cut(s) 539, 776
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 2 cut(s) 46, 441
BsmAI GTCTC 1 cut(s) 364
BsmI GAATGC 1 cut(s) 512
Bso31I GGTCTC 1 cut(s) 364
Bsp1286I GDGCHC 2 cut(s) 539, 776
Bsp143I GATC 4 cut(s) 622, 747, 799, 803
BspACI CCGC 7 cut(s) 23, 89, 109, 345, 405, 735, 782
BspCNI CTCAG 2 cut(s) 774, 788
BspDI ATCGAT 2 cut(s) 138, 802
BspFNI CGCG 2 cut(s) 35, 345
BspHI TCATGA 3 cut(s) 483, 516, 525
BspLI GGNNCC 1 cut(s) 403
BspPI GGATC 1 cut(s) 742
BspQI GCTCTTC 2 cut(s) 527, 764
BspT107I GGYRCC 1 cut(s) 401
BspTNI GGTCTC 1 cut(s) 364
BsrDI GCAATG 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 507
BssMI GATC 4 cut(s) 622, 747, 799, 803
BssNI GRCGYC 2 cut(s) 5, 402
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 1 cut(s) 490
Bst6I CTCTTC 2 cut(s) 527, 764
BstACI GRCGYC 2 cut(s) 5, 402
BstDEI CTNAG 2 cut(s) 761, 775
BstF5I GGATG 1 cut(s) 56
BstFNI CGCG 2 cut(s) 35, 345
BstH2I RGCGCY 2 cut(s) 405, 746
BstHHI GCGC 2 cut(s) 404, 745
BstKTI GATC 4 cut(s) 625, 750, 802, 806
BstMAI GTCTC 1 cut(s) 364
BstMBI GATC 4 cut(s) 622, 747, 799, 803
BstMCI CGRYCG 1 cut(s) 802
BstMWI GCNNNNNNNGC 2 cut(s) 287, 605
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 1 cut(s) 618
BstUI CGCG 2 cut(s) 35, 345
BstV1I GCAGC 3 cut(s) 278, 654, 771
Bsu15I ATCGAT 2 cut(s) 138, 802
BsuTUI ATCGAT 2 cut(s) 138, 802
BtsCI GGATG 1 cut(s) 56
CciI TCATGA 3 cut(s) 483, 516, 525
CfoI GCGC 2 cut(s) 404, 745
Cfr13I GGNCC 1 cut(s) 72
ClaI ATCGAT 2 cut(s) 138, 802
Csp6I GTAC 3 cut(s) 37, 226, 238
CspCI CAANNNNNGTGG 2 cut(s) 614, 649
CviAII CATG 9 cut(s) 293, 441, 484, 517, 526, 655, 706, 807, 828
CviQI GTAC 3 cut(s) 37, 226, 238
DdeI CTNAG 2 cut(s) 761, 775
DinI GGCGCC 1 cut(s) 403
DpnI GATC 4 cut(s) 624, 749, 801, 805
DpnII GATC 4 cut(s) 622, 747, 799, 803
Eam1104I CTCTTC 2 cut(s) 527, 764
EarI CTCTTC 2 cut(s) 527, 764
EciI GGCGGA 2 cut(s) 98, 724
Ecl136II GAGCTC 1 cut(s) 774
Eco24I GRGCYC 1 cut(s) 776
Eco31I GGTCTC 1 cut(s) 364
Eco32I GATATC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 72
Eco47III AGCGCT 1 cut(s) 744
Eco53kI GAGCTC 1 cut(s) 774
Eco57I CTGAAG 2 cut(s) 61, 187
EcoICRI GAGCTC 1 cut(s) 774
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 507
EcoRV GATATC 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 776
EgeI GGCGCC 1 cut(s) 403
EheI GGCGCC 1 cut(s) 403
FaeI CATG 9 cut(s) 296, 444, 487, 520, 529, 658, 709, 810, 831
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 9 cut(s) 292, 440, 483, 516, 525, 654, 705, 806, 827
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 5 cut(s) 267, 405, 668, 782, 785
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 776
Fsp4HI GCNGC 5 cut(s) 267, 405, 668, 782, 785
GlaI GCGC 2 cut(s) 403, 744
GluI GCNGC 5 cut(s) 267, 405, 668, 782, 785
GsaI CCCAGC 1 cut(s) 50
GsuI CTGGAG 1 cut(s) 600
HaeII RGCGCY 2 cut(s) 405, 746
HapII CCGG 1 cut(s) 112
HhaI GCGC 2 cut(s) 404, 745
Hin1I GRCGYC 2 cut(s) 5, 402
Hin1II CATG 9 cut(s) 296, 444, 487, 520, 529, 658, 709, 810, 831
Hin6I GCGC 2 cut(s) 402, 743
HinP1I GCGC 2 cut(s) 402, 743
HincII GTYRAC 2 cut(s) 306, 713
HindII GTYRAC 2 cut(s) 306, 713
HinfI GANTC 4 cut(s) 19, 472, 585, 629
HpaII CCGG 1 cut(s) 112
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 4 cut(s) 217, 306, 640, 713
Hpy188I TCNGA 3 cut(s) 756, 778, 799
Hpy188III TCNNGA 7 cut(s) 64, 100, 484, 517, 526, 579, 626
Hpy8I GTNNAC 4 cut(s) 217, 306, 640, 713
Hpy99I CGWCG 2 cut(s) 10, 215
HpyAV CCTTC 4 cut(s) 85, 239, 349, 741
HpyCH4III ACNGT 1 cut(s) 490
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 1 cut(s) 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 287, 605
HpyF3I CTNAG 2 cut(s) 761, 775
HpySE526I ACGT 1 cut(s) 715
Hsp92I GRCGYC 2 cut(s) 5, 402
Hsp92II CATG 9 cut(s) 296, 444, 487, 520, 529, 658, 709, 810, 831
HspAI GCGC 2 cut(s) 402, 743
KasI GGCGCC 1 cut(s) 401
Kzo9I GATC 4 cut(s) 622, 747, 799, 803
LguI GCTCTTC 2 cut(s) 527, 764
LmnI GCTCC 2 cut(s) 212, 792
LpnPI CCDG 9 cut(s) 11, 32, 125, 273, 365, 494, 521, 564, 734
Lsp1109I GCAGC 3 cut(s) 278, 654, 771
LweI GCATC 2 cut(s) 144, 654
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 1 cut(s) 586
MalI GATC 4 cut(s) 624, 749, 801, 805
MboI GATC 4 cut(s) 622, 747, 799, 803
MboII GAAGA 4 cut(s) 544, 673, 781, 786
MhlI GDGCHC 2 cut(s) 539, 776
MluCI AATT 8 cut(s) 13, 103, 154, 312, 327, 378, 453, 592
Mly113I GGCGCC 1 cut(s) 402
MlyI GAGTC 1 cut(s) 594
MnlI CCTC 3 cut(s) 522, 575, 762
MseI TTAA 2 cut(s) 456, 548
MslI CAYNNNNRTG 1 cut(s) 389
MspA1I CMGCKG 2 cut(s) 25, 784
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 1 cut(s) 509
Mva1269I GAATGC 1 cut(s) 512
MvaI CCWGG 1 cut(s) 509
MvnI CGCG 2 cut(s) 35, 345
MwoI GCNNNNNNNGC 2 cut(s) 287, 605
NarI GGCGCC 1 cut(s) 402
NdeII GATC 4 cut(s) 622, 747, 799, 803
NlaIII CATG 9 cut(s) 296, 444, 487, 520, 529, 658, 709, 810, 831
NlaIV GGNNCC 1 cut(s) 403
NmuCI GTSAC 1 cut(s) 586
PagI TCATGA 3 cut(s) 483, 516, 525
PciSI GCTCTTC 2 cut(s) 527, 764
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 167
PctI GAATGC 1 cut(s) 512
PfeI GAWTC 3 cut(s) 19, 472, 629
PflMI CCANNNNNTGG 1 cut(s) 46
PkrI GCNGC 5 cut(s) 268, 406, 669, 783, 786
Ple19I CGATCG 1 cut(s) 802
PleI GAGTC 1 cut(s) 593
PluTI GGCGCC 1 cut(s) 405
PpsI GAGTC 1 cut(s) 593
Psp124BI GAGCTC 1 cut(s) 776
Psp1406I AACGTT 1 cut(s) 715
Psp6I CCWGG 1 cut(s) 507
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 1 cut(s) 507
PspN4I GGNNCC 1 cut(s) 403
PspPI GGNCC 1 cut(s) 72
PvuI CGATCG 1 cut(s) 802
RsaI GTAC 3 cut(s) 38, 227, 239
RsaNI GTAC 3 cut(s) 37, 226, 238
RseI CAYNNNNRTG 1 cut(s) 389
SacI GAGCTC 1 cut(s) 776
SapI GCTCTTC 2 cut(s) 527, 764
SaqAI TTAA 2 cut(s) 456, 548
SatI GCNGC 5 cut(s) 267, 405, 668, 782, 785
Sau3AI GATC 4 cut(s) 622, 747, 799, 803
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 594
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 2 cut(s) 539, 776
SetI ASST 8 cut(s) 83, 209, 262, 360, 427, 470, 718, 776
SfaNI GCATC 2 cut(s) 144, 654
SfcI CTRYAG 1 cut(s) 618
SfoI GGCGCC 1 cut(s) 403
SinI GGWCC 1 cut(s) 72
SmiMI CAYNNNNRTG 1 cut(s) 389
Sse9I AATT 8 cut(s) 13, 103, 154, 312, 327, 378, 453, 592
SsiI CCGC 7 cut(s) 23, 89, 109, 345, 405, 735, 782
SspDI GGCGCC 1 cut(s) 401
SstI GAGCTC 1 cut(s) 776
StyD4I CCNGG 1 cut(s) 507
TaaI ACNGT 1 cut(s) 490
TaiI ACGT 1 cut(s) 718
TaqI TCGA 3 cut(s) 17, 138, 802
TasI AATT 8 cut(s) 13, 103, 154, 312, 327, 378, 453, 592
TatI WGTACW 1 cut(s) 225
TauI GCSGC 2 cut(s) 407, 784
TfiI GAWTC 3 cut(s) 19, 472, 629
Tru1I TTAA 2 cut(s) 456, 548
Tru9I TTAA 2 cut(s) 456, 548
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 3 cut(s) 266, 667, 784
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 8 cut(s) 354, 409, 429, 472, 505, 514, 533, 694
TspGWI ACGGA 2 cut(s) 199, 663
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 3 cut(s) 13, 103, 154
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.