Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1497618 .. 1500008

Gene Structure 2391 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1019400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGCGTCGTGGAATTCGATTCCGCTGGAAGTCGCGTACCAAGTGCTGGGATGGACGGCGTTCGTGAGTTGGTCCTTCAGCTTCTACCCGCAAGTCATCTTGAATTTCCGCCGGAAAAGTGTTGTGGGATTGAGCATCGATTTCGTGGTGCTGAATGTGACGAAGCACTCGTCCTATCTCATCTACAACGCCACTCTTTACTTCAGCTCCGTCGTCCAGAAGCAGTACTTTGAAAAGTACGGCGAAGGACAGATGATACCTGTGGCAGCAAATGATGTTGCTTTCTCTGCCCATGCTGTTTTGTTGACATCAATTACTCTGTTCCAAATTGCTATCTATGAACGCGGAAGCCAGAAGGTATCCAAGATTGCCATAGGAATTGTCCTCGCCGTGTGGTTAGGCGCCACAGTTTGTTTTTTTGTAGCTTTGCCAACCCATTCATGGCTTTGGCTAATTAACATTTTCAGCTTGATTCAAGTTTTCATGACGGTCACCAAGTATACTCCCCAGGCATTCATGAACTTCATGAGGAAGAGCACAGATGGATTAAGCATTGGCTACTTTTCACTTGATTTTTCTGGAGGAGTCACAAATTATGCCCAAATGGCTGTGCAGTCTATAGATCAAGATTCGTGGGTGAACTTCTACGGAAACATGGGGAAGATGCTGCTATCTATGATATCTGTGTCGTTTGACATTCTTTTCATGTGTCAACGTTTCCTGCTGTATCCTTCCGCCAAAGCGATGATCCCTCGTAAACTCAGTAAGGAGAGCTCAGAGCCGCTGCTCCAATCTTCCGATCACGCAGTCCATGAAAACGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

275

Amino Acids

30.93

Weight (kDa)

8.74

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	1.8e-18	PQ loop repeat
PQ-loop	PF04193	152 - 208	5.5e-14	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	401
AccB7I	CCANNNNNTGG	1 cut(s)	46
AccI	GTMKAC	1 cut(s)	500
AccII	CGCG	2 cut(s)	35, 345
AciI	CCGC	6 cut(s)	23, 89, 109, 345, 735, 782
AclI	AACGTT	1 cut(s)	715
AclWI	GGATC	1 cut(s)	742
AcsI	RAATTY	2 cut(s)	13, 103
AcuI	CTGAAG	2 cut(s)	61, 187
AcyI	GRCGYC	2 cut(s)	5, 402
AfaI	GTAC	3 cut(s)	38, 227, 239
AfiI	CCNNNNNNNGG	2 cut(s)	46, 441
AgsI	TTSAA	3 cut(s)	103, 233, 476
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	5 cut(s)	81, 207, 425, 468, 774
AluI	AGCT	5 cut(s)	81, 207, 425, 468, 774
Alw21I	GWGCWC	2 cut(s)	539, 776
AlwI	GGATC	1 cut(s)	742
ApeKI	GCWGC	3 cut(s)	266, 667, 784
ApoI	RAATTY	2 cut(s)	13, 103
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	484, 649
AvaII	GGWCC	1 cut(s)	72
BanI	GGYRCC	1 cut(s)	401
BanII	GRGCYC	1 cut(s)	776
Bbv12I	GWGCWC	2 cut(s)	539, 776
BbvI	GCAGC	3 cut(s)	278, 654, 771
BccI	CCATC	2 cut(s)	45, 536
BceAI	ACGGC	3 cut(s)	72, 256, 374
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	2 cut(s)	370, 738
BfmI	CTRYAG	1 cut(s)	618
BfoI	RGCGCY	1 cut(s)	405
BfuI	GTATCC	2 cut(s)	370, 738
BglI	GCCNNNNNGGC	1 cut(s)	605
BisI	GCNGC	4 cut(s)	267, 668, 782, 785
BlsI	GCNGC	4 cut(s)	268, 669, 783, 786
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	403
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	2 cut(s)	144, 654
BpmI	CTGGAG	1 cut(s)	600
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	2 cut(s)	5, 402
BsaJI	CCNNGG	1 cut(s)	507
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 441
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	1 cut(s)	507
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	46, 441
BseMII	CTCAG	2 cut(s)	775, 789
BseRI	GAGGAG	1 cut(s)	597
BseXI	GCAGC	3 cut(s)	278, 654, 771
BseYI	CCCAGC	1 cut(s)	46
BsgI	GTGCAG	1 cut(s)	632
Bsh1236I	CGCG	2 cut(s)	35, 345
BshNI	GGYRCC	1 cut(s)	401
BshVI	ATCGAT	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	539, 776
BsiSI	CCGG	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	46, 441
BsmI	GAATGC	1 cut(s)	512
Bsp1286I	GDGCHC	2 cut(s)	539, 776
Bsp143I	GATC	3 cut(s)	622, 747, 799
BspACI	CCGC	6 cut(s)	23, 89, 109, 345, 735, 782
BspCNI	CTCAG	2 cut(s)	774, 788
BspDI	ATCGAT	1 cut(s)	138
BspFNI	CGCG	2 cut(s)	35, 345
BspHI	TCATGA	3 cut(s)	483, 516, 525
BspLI	GGNNCC	1 cut(s)	403
BspPI	GGATC	1 cut(s)	742
BspQI	GCTCTTC	1 cut(s)	527
BspT107I	GGYRCC	1 cut(s)	401
BssECI	CCNNGG	1 cut(s)	507
BssMI	GATC	3 cut(s)	622, 747, 799
BssNAI	GTATAC	1 cut(s)	501
BssNI	GRCGYC	2 cut(s)	5, 402
Bst1107I	GTATAC	1 cut(s)	501
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	409, 490
Bst6I	CTCTTC	1 cut(s)	527
BstACI	GRCGYC	2 cut(s)	5, 402
BstDEI	CTNAG	2 cut(s)	761, 775
BstEII	GGTNACC	1 cut(s)	490
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	2 cut(s)	35, 345
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	3 cut(s)	625, 750, 802
BstMBI	GATC	3 cut(s)	622, 747, 799
BstMWI	GCNNNNNNNGC	2 cut(s)	287, 605
BstNI	CCWGG	1 cut(s)	509
BstPI	GGTNACC	1 cut(s)	490
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	1 cut(s)	618
BstUI	CGCG	2 cut(s)	35, 345
BstV1I	GCAGC	3 cut(s)	278, 654, 771
BstZ17I	GTATAC	1 cut(s)	501
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	2 cut(s)	370, 738
BsuTUI	ATCGAT	1 cut(s)	138
BtgZI	GCGATG	1 cut(s)	758
BtsCI	GGATG	1 cut(s)	56
CciI	TCATGA	3 cut(s)	483, 516, 525
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	72
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	3 cut(s)	37, 226, 238
CspCI	CAANNNNNGTGG	2 cut(s)	614, 649
CviAII	CATG	8 cut(s)	293, 441, 484, 517, 526, 655, 706, 812
CviQI	GTAC	3 cut(s)	37, 226, 238
DdeI	CTNAG	2 cut(s)	761, 775
DinI	GGCGCC	1 cut(s)	403
DpnI	GATC	3 cut(s)	624, 749, 801
DpnII	GATC	3 cut(s)	622, 747, 799
Eam1104I	CTCTTC	1 cut(s)	527
EarI	CTCTTC	1 cut(s)	527
EciI	GGCGGA	2 cut(s)	98, 724
Ecl136II	GAGCTC	1 cut(s)	774
Eco24I	GRGCYC	1 cut(s)	776
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	774
Eco57I	CTGAAG	2 cut(s)	61, 187
Eco91I	GGTNACC	1 cut(s)	490
EcoICRI	GAGCTC	1 cut(s)	774
EcoO65I	GGTNACC	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	681
EcoT38I	GRGCYC	1 cut(s)	776
EgeI	GGCGCC	1 cut(s)	403
EheI	GGCGCC	1 cut(s)	403
FaeI	CATG	8 cut(s)	296, 444, 487, 520, 529, 658, 709, 815
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	8 cut(s)	292, 440, 483, 516, 525, 654, 705, 811
FauI	CCCGC	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	500
Fnu4HI	GCNGC	4 cut(s)	267, 668, 782, 785
FokI	GGATG	1 cut(s)	63
FriOI	GRGCYC	1 cut(s)	776
Fsp4HI	GCNGC	4 cut(s)	267, 668, 782, 785
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	4 cut(s)	267, 668, 782, 785
GsaI	CCCAGC	1 cut(s)	50
GsuI	CTGGAG	1 cut(s)	600
HaeII	RGCGCY	1 cut(s)	405
HapII	CCGG	1 cut(s)	112
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	2 cut(s)	5, 402
Hin1II	CATG	8 cut(s)	296, 444, 487, 520, 529, 658, 709, 815
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	2 cut(s)	306, 713
HindII	GTYRAC	2 cut(s)	306, 713
HinfI	GANTC	4 cut(s)	19, 472, 585, 629
HpaII	CCGG	1 cut(s)	112
HphI	GGTGA	2 cut(s)	484, 649
Hpy166II	GTNNAC	5 cut(s)	306, 501, 640, 713, 758
Hpy188I	TCNGA	2 cut(s)	778, 799
Hpy188III	TCNNGA	8 cut(s)	64, 100, 217, 484, 517, 526, 579, 626
Hpy8I	GTNNAC	5 cut(s)	306, 501, 640, 713, 758
Hpy99I	CGWCG	2 cut(s)	10, 215
HpyAV	CCTTC	4 cut(s)	85, 239, 349, 741
HpyCH4III	ACNGT	2 cut(s)	409, 490
HpyCH4IV	ACGT	2 cut(s)	715, 819
HpyCH4V	TGCA	1 cut(s)	613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	287, 605
HpyF3I	CTNAG	2 cut(s)	761, 775
HpySE526I	ACGT	2 cut(s)	715, 819
Hsp92I	GRCGYC	2 cut(s)	5, 402
Hsp92II	CATG	8 cut(s)	296, 444, 487, 520, 529, 658, 709, 815
HspAI	GCGC	1 cut(s)	402
KasI	GGCGCC	1 cut(s)	401
Kzo9I	GATC	3 cut(s)	622, 747, 799
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	2 cut(s)	212, 792
Lsp1109I	GCAGC	3 cut(s)	278, 654, 771
LweI	GCATC	2 cut(s)	144, 654
MaeII	ACGT	2 cut(s)	715, 819
MaeIII	GTNAC	3 cut(s)	157, 490, 586
MalI	GATC	3 cut(s)	624, 749, 801
MboI	GATC	3 cut(s)	622, 747, 799
MboII	GAAGA	3 cut(s)	544, 673, 786
MhlI	GDGCHC	2 cut(s)	539, 776
MluCI	AATT	7 cut(s)	13, 103, 312, 327, 378, 453, 592
Mly113I	GGCGCC	1 cut(s)	402
MlyI	GAGTC	1 cut(s)	594
MnlI	CCTC	4 cut(s)	395, 522, 575, 762
MseI	TTAA	2 cut(s)	456, 548
MspA1I	CMGCKG	2 cut(s)	25, 784
MspI	CCGG	1 cut(s)	112
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	509
MvnI	CGCG	2 cut(s)	35, 345
MwoI	GCNNNNNNNGC	2 cut(s)	287, 605
NarI	GGCGCC	1 cut(s)	402
NdeII	GATC	3 cut(s)	622, 747, 799
NlaIII	CATG	8 cut(s)	296, 444, 487, 520, 529, 658, 709, 815
NlaIV	GGNNCC	1 cut(s)	403
NmuCI	GTSAC	3 cut(s)	157, 490, 586
PagI	TCATGA	3 cut(s)	483, 516, 525
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 167
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	3 cut(s)	19, 472, 629
PflMI	CCANNNNNTGG	1 cut(s)	46
PkrI	GCNGC	4 cut(s)	268, 669, 783, 786
PleI	GAGTC	1 cut(s)	593
PluTI	GGCGCC	1 cut(s)	405
PpsI	GAGTC	1 cut(s)	593
Psp124BI	GAGCTC	1 cut(s)	776
Psp1406I	AACGTT	1 cut(s)	715
Psp6I	CCWGG	1 cut(s)	507
PspEI	GGTNACC	1 cut(s)	490
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	1 cut(s)	403
PspPI	GGNCC	1 cut(s)	72
RsaI	GTAC	3 cut(s)	38, 227, 239
RsaNI	GTAC	3 cut(s)	37, 226, 238
SacI	GAGCTC	1 cut(s)	776
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	2 cut(s)	456, 548
SatI	GCNGC	4 cut(s)	267, 668, 782, 785
Sau3AI	GATC	3 cut(s)	622, 747, 799
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	594
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	2 cut(s)	539, 776
SetI	ASST	9 cut(s)	83, 209, 262, 360, 427, 470, 718, 776, 822
SfaNI	GCATC	2 cut(s)	144, 654
SfcI	CTRYAG	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	403
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	7 cut(s)	13, 103, 312, 327, 378, 453, 592
SsiI	CCGC	6 cut(s)	23, 89, 109, 345, 735, 782
SspDI	GGCGCC	1 cut(s)	401
SstI	GAGCTC	1 cut(s)	776
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	409, 490
TaiI	ACGT	2 cut(s)	718, 822
TaqI	TCGA	2 cut(s)	17, 138
TasI	AATT	7 cut(s)	13, 103, 312, 327, 378, 453, 592
TatI	WGTACW	1 cut(s)	225
TauI	GCSGC	1 cut(s)	784
TfiI	GAWTC	3 cut(s)	19, 472, 629
Tru1I	TTAA	2 cut(s)	456, 548
Tru9I	TTAA	2 cut(s)	456, 548
TseFI	GTSAC	3 cut(s)	157, 490, 586
TseI	GCWGC	3 cut(s)	266, 667, 784
Tsp45I	GTSAC	3 cut(s)	157, 490, 586
TspDTI	ATGAA	7 cut(s)	354, 429, 472, 505, 514, 533, 694
TspGWI	ACGGA	2 cut(s)	199, 663
Van91I	CCANNNNNTGG	1 cut(s)	46
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	13, 103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	500
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.