pycom17g01600

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0001326
Physical Location & Seq
Reverse (-)
1050810 .. 1053660
2851 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g01600.2

Sequence Viewer

Length: 1017 bp
ATGGGCCTGCAGAAAGAGCTCGATGAACGTGCCCGCGTAGATGTCAAAGCGATTGCCTTGCTGAAAAAAAGCCCCTTTCTTTCTTCACACTCTTGCTCTCTCCGCGCGCTTTTGACCGGACTAAATTTAAGGCTGCTCGGAATCCTCCCGCCGCCGGCTAAGTGGGAATCGGGAGGAGAGAGAGAAGGAATGGCGTCGTGGAATTCGATTCCTCTGGAAATCATATACGAAGTGATGGGATGGGCGGCGTTCGTGAGTTGGTCCGTCAGCTTCTACCCGCAAGTCGTTTTGAATTTCCGCCGGAAAAGTGTGGTGGGTCTGAACTTCGATTTCGTGGTGCTGAATTTGACGAAGCACTCCTCTTACCTCATTTACAACGCCACTCTCTACTTCAGCTCCGCCGTCCAGAAGCAGTACTTCGAAAAGTACGGCGAGAAACAGATGATACCTGTTGCAGCAAATGATGTTGCTTTCTCTATTCATGCTGTTTTACTGACGGCAATTACCCTGTACCAAATATTAATCTATGAACGCGGAAATCAGAAGGTCTCCAAGATTTCCATTGGAATTGTTGCGGCCGTGTGGTTAGGTGCTGCAGTTTGTGTTTTCTTAGCTTTGCCAAGCCATTCCTGGCTTTGGTTGATCTCCATTTTCAACTCAATTCAAGTTTTTATGACATGCATCAAATATATACCCCAGGCGGTCATGAACTTCTTGCGGAAGAGCACAGATGGATTCAGCATTGGCAACATTTTACTTGACTTTTCTGGAGGGGTGGCTAATTATGCACAAATGGCCATGCAGTCTATAGATCAAGATTCTTGGGTGAACTTTTATGGAAATATAGGAAAGACTTTGCTGTCTTTGATATCTATATTCTTTGACCTTCTATTCATGGGTCAACATTTCGTGCTGTATCGTGGAAAGAAAGCTCTGATCTCCCCTAAAATCATCAATAAGGAGAGCACAGAACCGCTTGTCAAGTCTTCCGATGACTCAGTTTCAGAAAACGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

339

Amino Acids

37.81

Weight (kDa)

9.06

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 859
AccII CGCG 4 cut(s) 36, 105, 107, 534
AcoI YGGCCR 2 cut(s) 576, 795
AcsI RAATTY 4 cut(s) 124, 202, 292, 343
AcuI CTGAAG 1 cut(s) 376
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 3 cut(s) 416, 428, 512
AfiI CCNNNNNNNGG 2 cut(s) 154, 636
AgsI TTSAA 3 cut(s) 292, 655, 665
AjnI CCWGG 2 cut(s) 629, 696
AluBI AGCT 5 cut(s) 19, 270, 396, 614, 932
AluI AGCT 5 cut(s) 19, 270, 396, 614, 932
Alw21I GWGCWC 3 cut(s) 21, 728, 968
Alw26I GTCTC 1 cut(s) 553
AoxI GGCC 3 cut(s) 4, 576, 795
ApeKI GCWGC 3 cut(s) 133, 455, 593
ApoI RAATTY 4 cut(s) 124, 202, 292, 343
AseI ATTAAT 1 cut(s) 521
AspLEI GCGC 2 cut(s) 107, 109
AspS9I GGNCC 2 cut(s) 4, 261
AsuHPI GGTGA 1 cut(s) 838
AsuII TTCGAA 1 cut(s) 420
AvaII GGWCC 1 cut(s) 261
BaeGI GKGCMC 1 cut(s) 34
BalI TGGCCA 1 cut(s) 797
BanII GRGCYC 1 cut(s) 21
BbsI GAAGAC 1 cut(s) 978
Bbv12I GWGCWC 3 cut(s) 21, 728, 968
BbvI GCAGC 3 cut(s) 120, 467, 580
BccI CCATC 3 cut(s) 229, 234, 725
BceAI ACGGC 4 cut(s) 386, 445, 513, 563
BcgI CGANNNNNNTGC 4 cut(s) 11, 40, 45, 74
BciT130I CCWGG 2 cut(s) 631, 698
BcoDI GTCTC 1 cut(s) 553
BfmI CTRYAG 3 cut(s) 8, 594, 807
BisI GCNGC 6 cut(s) 134, 152, 246, 456, 576, 594
BlsI GCNGC 6 cut(s) 135, 153, 247, 457, 577, 595
BmcAI AGTACT 1 cut(s) 416
Bme1390I CCNGG 2 cut(s) 631, 698
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 2 cut(s) 4, 261
BmrFI CCNGG 2 cut(s) 631, 698
BmsI GCATC 1 cut(s) 690
BpiI GAAGAC 1 cut(s) 978
BpmI CTGGAG 1 cut(s) 789
Bpu14I TTCGAA 1 cut(s) 420
BsaHI GRCGYC 1 cut(s) 194
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 1 cut(s) 696
BsaWI WCCGGW 1 cut(s) 116
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 636
Bse118I RCCGGY 1 cut(s) 154
BseBI CCWGG 2 cut(s) 631, 698
BseDI CCNNGG 1 cut(s) 696
BseGI GGATG 1 cut(s) 245
BseLI CCNNNNNNNGG 2 cut(s) 154, 636
BseMII CTCAG 1 cut(s) 1011
BsePI GCGCGC 1 cut(s) 105
BseRI GAGGAG 2 cut(s) 189, 349
BseSI GKGCMC 1 cut(s) 34
BseX3I CGGCCG 1 cut(s) 576
BseXI GCAGC 3 cut(s) 120, 467, 580
Bsh1236I CGCG 4 cut(s) 36, 105, 107, 534
Bsh1285I CGRYCG 1 cut(s) 579
BshFI GGCC 3 cut(s) 6, 578, 797
BsiEI CGRYCG 1 cut(s) 579
BsiHKAI GWGCWC 3 cut(s) 21, 728, 968
BsiSI CCGG 3 cut(s) 117, 155, 301
BslI CCNNNNNNNGG 2 cut(s) 154, 636
BsmAI GTCTC 1 cut(s) 553
BsnI GGCC 3 cut(s) 6, 578, 797
Bso31I GGTCTC 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 420
Bsp1286I GDGCHC 4 cut(s) 21, 34, 728, 968
Bsp143I GATC 3 cut(s) 642, 811, 936
BspANI GGCC 3 cut(s) 6, 578, 797
BspCNI CTCAG 1 cut(s) 1010
BspFNI CGCG 4 cut(s) 36, 105, 107, 534
BspHI TCATGA 1 cut(s) 705
BspMAI CTGCAG 2 cut(s) 12, 598
BspQI GCTCTTC 1 cut(s) 716
BspT104I TTCGAA 1 cut(s) 420
BspTNI GGTCTC 1 cut(s) 553
BsrFI RCCGGY 1 cut(s) 154
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 1 cut(s) 696
BssHII GCGCGC 1 cut(s) 105
BssMI GATC 3 cut(s) 642, 811, 936
BssNI GRCGYC 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 631, 698
Bst6I CTCTTC 1 cut(s) 716
BstACI GRCGYC 1 cut(s) 194
BstBI TTCGAA 1 cut(s) 420
BstC8I GCNNGC 4 cut(s) 8, 34, 107, 156
BstDEI CTNAG 3 cut(s) 159, 610, 997
BstF5I GGATG 1 cut(s) 245
BstFNI CGCG 4 cut(s) 36, 105, 107, 534
BstHHI GCGC 2 cut(s) 107, 109
BstKTI GATC 3 cut(s) 645, 814, 939
BstMAI GTCTC 1 cut(s) 553
BstMBI GATC 3 cut(s) 642, 811, 936
BstMCI CGRYCG 1 cut(s) 579
BstMWI GCNNNNNNNGC 4 cut(s) 16, 102, 785, 794
BstNI CCWGG 2 cut(s) 631, 698
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 2 cut(s) 629, 696
BstSFI CTRYAG 3 cut(s) 8, 594, 807
BstSLI GKGCMC 1 cut(s) 34
BstUI CGCG 4 cut(s) 36, 105, 107, 534
BstV1I GCAGC 3 cut(s) 120, 467, 580
BstV2I GAAGAC 1 cut(s) 978
BstZI CGGCCG 1 cut(s) 576
BsuRI GGCC 3 cut(s) 6, 578, 797
BtsCI GGATG 1 cut(s) 245
Cac8I GCNNGC 4 cut(s) 8, 34, 107, 156
CciI TCATGA 1 cut(s) 705
CfoI GCGC 2 cut(s) 107, 109
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 4, 261
CseI GACGC 1 cut(s) 183
Csp6I GTAC 3 cut(s) 415, 427, 511
CviAII CATG 5 cut(s) 482, 678, 706, 799, 895
CviQI GTAC 3 cut(s) 415, 427, 511
DdeI CTNAG 3 cut(s) 159, 610, 997
DpnI GATC 3 cut(s) 644, 813, 938
DpnII GATC 3 cut(s) 642, 811, 936
DrdI GACNNNNNNGTC 1 cut(s) 859
DseDI GACNNNNNNGTC 1 cut(s) 859
EaeI YGGCCR 2 cut(s) 576, 795
EagI CGGCCG 1 cut(s) 576
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
EciI GGCGGA 2 cut(s) 287, 388
Ecl136II GAGCTC 1 cut(s) 19
EclXI CGGCCG 1 cut(s) 576
Eco24I GRGCYC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 553
Eco32I GATATC 1 cut(s) 870
Eco47I GGWCC 1 cut(s) 261
Eco52I CGGCCG 1 cut(s) 576
Eco53kI GAGCTC 1 cut(s) 19
Eco57I CTGAAG 1 cut(s) 376
EcoICRI GAGCTC 1 cut(s) 19
EcoRI GAATTC 1 cut(s) 202
EcoRII CCWGG 2 cut(s) 629, 696
EcoRV GATATC 1 cut(s) 870
EcoT22I ATGCAT 1 cut(s) 683
EcoT38I GRGCYC 1 cut(s) 21
FaeI CATG 5 cut(s) 485, 681, 709, 802, 898
FalI AAGNNNNNCTT 2 cut(s) 401, 433
FatI CATG 5 cut(s) 481, 677, 705, 798, 894
FauI CCCGC 3 cut(s) 41, 156, 285
Fnu4HI GCNGC 6 cut(s) 134, 152, 246, 456, 576, 594
FokI GGATG 1 cut(s) 252
FriOI GRGCYC 1 cut(s) 21
Fsp4HI GCNGC 6 cut(s) 134, 152, 246, 456, 576, 594
GlaI GCGC 2 cut(s) 106, 108
GluI GCNGC 6 cut(s) 134, 152, 246, 456, 576, 594
GsuI CTGGAG 1 cut(s) 789
HaeIII GGCC 3 cut(s) 6, 578, 797
HapII CCGG 3 cut(s) 117, 155, 301
HgaI GACGC 1 cut(s) 183
HhaI GCGC 2 cut(s) 107, 109
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 5 cut(s) 485, 681, 709, 802, 898
Hin6I GCGC 2 cut(s) 105, 107
HinP1I GCGC 2 cut(s) 105, 107
HincII GTYRAC 1 cut(s) 902
HindII GTYRAC 1 cut(s) 902
HinfI GANTC 6 cut(s) 141, 167, 208, 735, 818, 995
HpaII CCGG 3 cut(s) 117, 155, 301
HphI GGTGA 1 cut(s) 838
Hpy166II GTNNAC 2 cut(s) 829, 902
Hpy188I TCNGA 6 cut(s) 140, 321, 543, 936, 991, 1006
Hpy188III TCNNGA 7 cut(s) 171, 215, 253, 406, 706, 768, 815
Hpy8I GTNNAC 2 cut(s) 829, 902
Hpy99I CGWCG 1 cut(s) 199
HpyAV CCTTC 3 cut(s) 179, 538, 896
HpyCH4IV ACGT 2 cut(s) 28, 1011
HpyCH4V TGCA 6 cut(s) 10, 455, 596, 681, 788, 802
HpyF10VI GCNNNNNNNGC 4 cut(s) 16, 102, 785, 794
HpyF3I CTNAG 3 cut(s) 159, 610, 997
HpySE526I ACGT 2 cut(s) 28, 1011
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 5 cut(s) 485, 681, 709, 802, 898
HspAI GCGC 2 cut(s) 105, 107
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Kzo9I GATC 3 cut(s) 642, 811, 936
LguI GCTCTTC 1 cut(s) 716
LmnI GCTCC 1 cut(s) 401
Lsp1109I GCAGC 3 cut(s) 120, 467, 580
LweI GCATC 1 cut(s) 690
MaeII ACGT 2 cut(s) 28, 1011
MalI GATC 3 cut(s) 644, 813, 938
MboI GATC 3 cut(s) 642, 811, 936
MboII GAAGA 3 cut(s) 75, 733, 978
MhlI GDGCHC 4 cut(s) 21, 34, 728, 968
MlsI TGGCCA 1 cut(s) 797
MluCI AATT 8 cut(s) 124, 202, 292, 343, 501, 567, 660, 781
MluNI TGGCCA 1 cut(s) 797
MlyI GAGTC 1 cut(s) 989
MnlI CCTC 6 cut(s) 155, 167, 222, 370, 377, 764
Mox20I TGGCCA 1 cut(s) 797
Mph1103I ATGCAT 1 cut(s) 683
MroNI GCCGGC 1 cut(s) 154
MscI TGGCCA 1 cut(s) 797
MseI TTAA 2 cut(s) 128, 521
Msp20I TGGCCA 1 cut(s) 797
MspI CCGG 3 cut(s) 117, 155, 301
MspR9I CCNGG 2 cut(s) 631, 698
MvaI CCWGG 2 cut(s) 631, 698
MvnI CGCG 4 cut(s) 36, 105, 107, 534
MwoI GCNNNNNNNGC 4 cut(s) 16, 102, 785, 794
NaeI GCCGGC 1 cut(s) 156
NdeII GATC 3 cut(s) 642, 811, 936
NgoMIV GCCGGC 1 cut(s) 154
NlaIII CATG 5 cut(s) 485, 681, 709, 802, 898
NsiI ATGCAT 1 cut(s) 683
NspI RCATGY 1 cut(s) 681
NspV TTCGAA 1 cut(s) 420
PagI TCATGA 1 cut(s) 705
PauI GCGCGC 1 cut(s) 105
PciSI GCTCTTC 1 cut(s) 716
PcsI WCGNNNNNNNCGW 1 cut(s) 203
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 5 cut(s) 141, 167, 208, 735, 818
PkrI GCNGC 6 cut(s) 135, 153, 247, 457, 577, 595
PleI GAGTC 1 cut(s) 989
PpsI GAGTC 1 cut(s) 989
PshBI ATTAAT 1 cut(s) 521
Psp124BI GAGCTC 1 cut(s) 21
Psp6I CCWGG 2 cut(s) 629, 696
PspGI CCWGG 2 cut(s) 629, 696
PspPI GGNCC 2 cut(s) 4, 261
PstI CTGCAG 2 cut(s) 12, 598
PteI GCGCGC 1 cut(s) 105
RsaI GTAC 3 cut(s) 416, 428, 512
RsaNI GTAC 3 cut(s) 415, 427, 511
SacI GAGCTC 1 cut(s) 21
SapI GCTCTTC 1 cut(s) 716
SaqAI TTAA 2 cut(s) 128, 521
SatI GCNGC 6 cut(s) 134, 152, 246, 456, 576, 594
Sau3AI GATC 3 cut(s) 642, 811, 936
Sau96I GGNCC 2 cut(s) 4, 261
ScaI AGTACT 1 cut(s) 416
SchI GAGTC 1 cut(s) 989
ScrFI CCNGG 2 cut(s) 631, 698
SduI GDGCHC 4 cut(s) 21, 34, 728, 968
SfaNI GCATC 1 cut(s) 690
SfcI CTRYAG 3 cut(s) 8, 594, 807
SfuI TTCGAA 1 cut(s) 420
SinI GGWCC 1 cut(s) 261
Sse9I AATT 8 cut(s) 124, 202, 292, 343, 501, 567, 660, 781
SspI AATATT 1 cut(s) 519
SstI GAGCTC 1 cut(s) 21
StyD4I CCNGG 2 cut(s) 629, 696
TaiI ACGT 2 cut(s) 31, 1014
TaqI TCGA 4 cut(s) 21, 206, 327, 420
TasI AATT 8 cut(s) 124, 202, 292, 343, 501, 567, 660, 781
TatI WGTACW 1 cut(s) 414
TauI GCSGC 3 cut(s) 154, 248, 578
TfiI GAWTC 5 cut(s) 141, 167, 208, 735, 818
Tru1I TTAA 2 cut(s) 128, 521
Tru9I TTAA 2 cut(s) 128, 521
TseI GCWGC 3 cut(s) 133, 455, 593
TspDTI ATGAA 5 cut(s) 39, 470, 543, 722, 883
TspGWI ACGGA 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 261
VspI ATTAAT 1 cut(s) 521
XapI RAATTY 4 cut(s) 124, 202, 292, 343
XceI RCATGY 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 627
ZrmI AGTACT 1 cut(s) 416
Zsp2I ATGCAT 1 cut(s) 683
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.