Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

87737763 .. 87739334

Gene Structure 1572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG663300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCTGTCGGCTTCTACCCTCAAGTGTTCTTGAATTTCCGTCGAAAAAGTGTTGTGGGCCTGAGCATCGATTTTGTGGTGCTGAATTGGACGAAACACTCGTCGTATCTCATTTACAACGCCTCTCTTTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCCATTATCCTTTTCCAAATTGCAACCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGCACCTTGGTTGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

171

Amino Acids

19.57

Weight (kDa)

9.41

Isoelectric Point (pI)

24.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	3.4e-16	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	210
AcsI	RAATTY	2 cut(s)	13, 103
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	227, 239
AgsI	TTSAA	4 cut(s)	103, 233, 466, 476
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	3 cut(s)	25, 207, 266
AluI	AGCT	3 cut(s)	25, 207, 266
AoxI	GGCC	1 cut(s)	127
ApeKI	GCWGC	2 cut(s)	266, 404
ApoI	RAATTY	2 cut(s)	13, 103
ArsI	GACNNNNNNTTYG	2 cut(s)	155, 187
AspS9I	GGNCC	1 cut(s)	127
BbvI	GCAGC	2 cut(s)	253, 391
BceAI	ACGGC	2 cut(s)	197, 281
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	1 cut(s)	370
BfmI	CTRYAG	2 cut(s)	261, 405
BfuI	GTATCC	1 cut(s)	370
BisI	GCNGC	2 cut(s)	267, 405
BlsI	GCNGC	2 cut(s)	268, 406
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	509
BmgT120I	GGNCC	1 cut(s)	127
BmrFI	CCNGG	1 cut(s)	509
BmsI	GCATC	1 cut(s)	144
BpmI	CTGGAG	1 cut(s)	47
Bpu10I	CCTNAGC	1 cut(s)	131
BpuEI	CTTGAG	1 cut(s)	75
Bsa29I	ATCGAT	1 cut(s)	138
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	417, 507
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
BseBI	CCWGG	1 cut(s)	509
BseCI	ATCGAT	1 cut(s)	138
BseDI	CCNNGG	2 cut(s)	417, 507
BseGI	GGATG	1 cut(s)	308
BseMII	CTCAG	1 cut(s)	122
BseXI	GCAGC	2 cut(s)	253, 391
BshFI	GGCC	1 cut(s)	129
BshVI	ATCGAT	1 cut(s)	138
BsnI	GGCC	1 cut(s)	129
Bsp143I	GATC	1 cut(s)	30
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	1 cut(s)	123
BspDI	ATCGAT	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	409
BssECI	CCNNGG	2 cut(s)	417, 507
BssMI	GATC	1 cut(s)	30
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	417
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	242, 490
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	308
BstKTI	GATC	1 cut(s)	33
BstMBI	GATC	1 cut(s)	30
BstNI	CCWGG	1 cut(s)	509
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	2 cut(s)	261, 405
BstV1I	GCAGC	2 cut(s)	253, 391
Bsu15I	ATCGAT	1 cut(s)	138
BsuI	GTATCC	1 cut(s)	370
BsuRI	GGCC	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	138
BtsCI	GGATG	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	127
ClaI	ATCGAT	1 cut(s)	138
Csp6I	GTAC	2 cut(s)	226, 238
CviAII	CATG	1 cut(s)	293
CviJI	RGCY	9 cut(s)	25, 74, 81, 129, 207, 266, 397, 445, 451
CviKI_1	RGCY	9 cut(s)	25, 74, 81, 129, 207, 266, 397, 445, 451
CviQI	GTAC	2 cut(s)	226, 238
DdeI	CTNAG	1 cut(s)	131
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EciI	GGCGGA	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	417
Eco57I	CTGAAG	1 cut(s)	187
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	507
EcoT14I	CCWWGG	1 cut(s)	417
ErhI	CCWWGG	1 cut(s)	417
FaeI	CATG	1 cut(s)	296
FaiI	YATR	5 cut(s)	37, 294, 339, 485, 501
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	1 cut(s)	292
Fnu4HI	GCNGC	2 cut(s)	267, 405
FokI	GGATG	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	267, 405
GluI	GCNGC	2 cut(s)	267, 405
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	129
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	296
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	19, 378
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	3 cut(s)	219, 248, 354
Hpy188III	TCNNGA	1 cut(s)	100
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	3 cut(s)	10, 114, 175
HpyCH4III	ACNGT	2 cut(s)	242, 490
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	4 cut(s)	269, 332, 407, 414
HpyF3I	CTNAG	1 cut(s)	131
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	296
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	1 cut(s)	212
LpnPI	CCDG	5 cut(s)	11, 32, 143, 273, 494
Lsp1109I	GCAGC	2 cut(s)	253, 391
LweI	GCATC	1 cut(s)	144
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	304
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	1 cut(s)	454
MluCI	AATT	5 cut(s)	13, 103, 154, 327, 471
MnlI	CCTC	3 cut(s)	99, 202, 338
MspA1I	CMGCKG	1 cut(s)	25
MspR9I	CCNGG	1 cut(s)	509
MvaI	CCWGG	1 cut(s)	509
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	1 cut(s)	296
PcsI	WCGNNNNNNNCGW	2 cut(s)	14, 167
PfeI	GAWTC	2 cut(s)	19, 378
PkrI	GCNGC	2 cut(s)	268, 406
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspPI	GGNCC	1 cut(s)	127
PstI	CTGCAG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	227, 239
RsaNI	GTAC	2 cut(s)	226, 238
SatI	GCNGC	2 cut(s)	267, 405
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	127
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	509
SetI	ASST	8 cut(s)	27, 68, 209, 262, 268, 338, 419, 513
SfaNI	GCATC	1 cut(s)	144
SfcI	CTRYAG	2 cut(s)	261, 405
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	5 cut(s)	13, 103, 154, 327, 471
SsiI	CCGC	1 cut(s)	210
StyD4I	CCNGG	1 cut(s)	507
StyI	CCWWGG	1 cut(s)	417
TaaI	ACNGT	2 cut(s)	242, 490
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	3 cut(s)	17, 112, 138
TasI	AATT	5 cut(s)	13, 103, 154, 327, 471
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	19, 378
TseI	GCWGC	2 cut(s)	266, 404
TspDTI	ATGAA	2 cut(s)	281, 354
TspGWI	ACGGA	1 cut(s)	98
XapI	RAATTY	2 cut(s)	13, 103
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.