Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

87752403 .. 87757042

Gene Structure 4640 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG663700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCCGTCGGCTTCTACCCTCTAGTGTTCTTGAATTTCCGTCGAAAAAGCACTCGTCGTATCTCATTTACAACGCCACTCTCTACTTCAGCTCCGCCGCGCGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCAATTATCCTTTTCCAAATTGCAATCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGGAGATCGTGGTGGATGGGGCGCCGCTGGTGGAGGTGAGATGGTGGATCAGGTAGAGGGTCTGAAAGAGAACTTCAATACTTGCCATGACAGTCCCGATCCAAAAGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

152

Amino Acids

16.95

Weight (kDa)

9.13

Isoelectric Point (pI)

27.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 49	1.4e-06	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccII	CGCG	2 cut(s)	169, 171
AciI	CCGC	3 cut(s)	164, 167, 372
AclWI	GGATC	2 cut(s)	402, 440
AcsI	RAATTY	2 cut(s)	13, 103
AcuI	CTGAAG	1 cut(s)	141
AcyI	GRCGYC	2 cut(s)	5, 369
AfaI	GTAC	2 cut(s)	185, 197
AgsI	TTSAA	3 cut(s)	103, 191, 424
AluBI	AGCT	3 cut(s)	25, 161, 224
AluI	AGCT	3 cut(s)	25, 161, 224
AlwI	GGATC	2 cut(s)	402, 440
AoxI	GGCC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	224
ApoI	RAATTY	2 cut(s)	13, 103
AspLEI	GCGC	2 cut(s)	171, 371
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	395
BanI	GGYRCC	1 cut(s)	368
BbvI	GCAGC	1 cut(s)	211
BccI	CCATC	2 cut(s)	357, 382
BceAI	ACGGC	2 cut(s)	59, 239
BciVI	GTATCC	1 cut(s)	328
BfaI	CTAG	1 cut(s)	92
BfmI	CTRYAG	1 cut(s)	219
BfoI	RGCGCY	1 cut(s)	372
BfuI	GTATCC	1 cut(s)	328
BisI	GCNGC	3 cut(s)	167, 225, 372
BlsI	GCNGC	3 cut(s)	168, 226, 373
BmcAI	AGTACT	1 cut(s)	185
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	1 cut(s)	370
BpmI	CTGGAG	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	5, 369
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
BseGI	GGATG	1 cut(s)	368
BseXI	GCAGC	1 cut(s)	211
Bsh1236I	CGCG	2 cut(s)	169, 171
BshFI	GGCC	1 cut(s)	74
BshNI	GGYRCC	1 cut(s)	368
BslFI	GGGAC	1 cut(s)	426
BsmFI	GGGAC	1 cut(s)	426
BsnI	GGCC	1 cut(s)	74
Bsp143I	GATC	4 cut(s)	30, 352, 394, 445
BspACI	CCGC	3 cut(s)	164, 167, 372
BspANI	GGCC	1 cut(s)	74
BspFNI	CGCG	2 cut(s)	169, 171
BspLI	GGNNCC	1 cut(s)	370
BspPI	GGATC	2 cut(s)	402, 440
BspT107I	GGYRCC	1 cut(s)	368
BssMI	GATC	4 cut(s)	30, 352, 394, 445
BssNI	GRCGYC	2 cut(s)	5, 369
Bst4CI	ACNGT	2 cut(s)	200, 440
BstACI	GRCGYC	2 cut(s)	5, 369
BstF5I	GGATG	1 cut(s)	368
BstFNI	CGCG	2 cut(s)	169, 171
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	2 cut(s)	171, 371
BstKTI	GATC	4 cut(s)	33, 355, 397, 448
BstMBI	GATC	4 cut(s)	30, 352, 394, 445
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	2 cut(s)	169, 171
BstV1I	GCAGC	1 cut(s)	211
BsuI	GTATCC	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	74
BtsCI	GGATG	1 cut(s)	368
CfoI	GCGC	2 cut(s)	171, 371
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	184, 196
CviAII	CATG	2 cut(s)	251, 434
CviJI	RGCY	5 cut(s)	25, 74, 81, 161, 224
CviKI_1	RGCY	5 cut(s)	25, 74, 81, 161, 224
CviQI	GTAC	2 cut(s)	184, 196
DinI	GGCGCC	1 cut(s)	370
DpnI	GATC	4 cut(s)	32, 354, 396, 447
DpnII	GATC	4 cut(s)	30, 352, 394, 445
EciI	GGCGGA	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	141
EcoRI	GAATTC	1 cut(s)	13
EgeI	GGCGCC	1 cut(s)	370
EheI	GGCGCC	1 cut(s)	370
FaeI	CATG	2 cut(s)	254, 437
FaiI	YATR	4 cut(s)	37, 252, 297, 435
FalI	AAGNNNNNCTT	2 cut(s)	170, 202
FaqI	GGGAC	1 cut(s)	426
FatI	CATG	2 cut(s)	250, 433
Fnu4HI	GCNGC	3 cut(s)	167, 225, 372
FokI	GGATG	1 cut(s)	375
Fsp4HI	GCNGC	3 cut(s)	167, 225, 372
FspBI	CTAG	1 cut(s)	92
GlaI	GCGC	2 cut(s)	170, 370
GluI	GCNGC	3 cut(s)	167, 225, 372
GsuI	CTGGAG	1 cut(s)	47
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	74
HhaI	GCGC	2 cut(s)	171, 371
Hin1I	GRCGYC	2 cut(s)	5, 369
Hin1II	CATG	2 cut(s)	254, 437
Hin6I	GCGC	2 cut(s)	169, 369
HinP1I	GCGC	2 cut(s)	169, 369
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	19, 336
HphI	GGTGA	1 cut(s)	395
Hpy166II	GTNNAC	1 cut(s)	57
Hpy188I	TCNGA	4 cut(s)	177, 206, 312, 411
Hpy188III	TCNNGA	2 cut(s)	100, 443
Hpy8I	GTNNAC	1 cut(s)	57
Hpy99I	CGWCG	4 cut(s)	10, 80, 114, 129
HpyCH4III	ACNGT	2 cut(s)	200, 440
HpyCH4IV	ACGT	1 cut(s)	65
HpyCH4V	TGCA	2 cut(s)	227, 290
HpySE526I	ACGT	1 cut(s)	65
Hsp92I	GRCGYC	2 cut(s)	5, 369
Hsp92II	CATG	2 cut(s)	254, 437
HspAI	GCGC	2 cut(s)	169, 369
KasI	GGCGCC	1 cut(s)	368
Kzo9I	GATC	4 cut(s)	30, 352, 394, 445
LmnI	GCTCC	1 cut(s)	166
LpnPI	CCDG	5 cut(s)	11, 32, 231, 360, 383
Lsp1109I	GCAGC	1 cut(s)	211
MaeI	CTAG	1 cut(s)	92
MaeII	ACGT	1 cut(s)	65
MaeIII	GTNAC	1 cut(s)	262
MalI	GATC	4 cut(s)	32, 354, 396, 447
MboI	GATC	4 cut(s)	30, 352, 394, 445
MluCI	AATT	4 cut(s)	13, 103, 270, 285
Mly113I	GGCGCC	1 cut(s)	369
MnlI	CCTC	4 cut(s)	99, 296, 374, 397
MspA1I	CMGCKG	2 cut(s)	25, 374
MvnI	CGCG	2 cut(s)	169, 171
NarI	GGCGCC	1 cut(s)	369
NdeII	GATC	4 cut(s)	30, 352, 394, 445
NlaIII	CATG	2 cut(s)	254, 437
NlaIV	GGNNCC	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	2 cut(s)	19, 336
PkrI	GCNGC	3 cut(s)	168, 226, 373
PluTI	GGCGCC	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	370
PspPI	GGNCC	1 cut(s)	72
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	185, 197
RsaNI	GTAC	2 cut(s)	184, 196
SatI	GCNGC	3 cut(s)	167, 225, 372
Sau3AI	GATC	4 cut(s)	30, 352, 394, 445
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	185
SetI	ASST	7 cut(s)	27, 68, 163, 220, 226, 385, 402
SfcI	CTRYAG	1 cut(s)	219
SfoI	GGCGCC	1 cut(s)	370
Sse9I	AATT	4 cut(s)	13, 103, 270, 285
SsiI	CCGC	3 cut(s)	164, 167, 372
SspDI	GGCGCC	1 cut(s)	368
SspMI	CTAG	1 cut(s)	92
TaaI	ACNGT	2 cut(s)	200, 440
TaiI	ACGT	1 cut(s)	68
TaqI	TCGA	2 cut(s)	17, 112
TasI	AATT	4 cut(s)	13, 103, 270, 285
TatI	WGTACW	1 cut(s)	183
TauI	GCSGC	2 cut(s)	169, 374
TfiI	GAWTC	2 cut(s)	19, 336
TseI	GCWGC	1 cut(s)	224
TspDTI	ATGAA	2 cut(s)	239, 312
TspGWI	ACGGA	1 cut(s)	98
XapI	RAATTY	2 cut(s)	13, 103
XspI	CTAG	1 cut(s)	92
ZrmI	AGTACT	1 cut(s)	185

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.