Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

38563969 .. 38566481

Gene Structure 2513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g52311.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGTGGCATCGTGGAACTCGATTCCGCTCGAGATCACTTACAGAGTTTTGGGGTGGTTGACCTTCACGTTCTGGTCCGTCGGCTCCTATCCTCAAGTCATCTTGAACTTTCGTCGGAAAAGTGTTGTGGGGCTGAGCATCGACTTTAAGGTGCTCAATTTCACGAAGCACTCGTCGTATCTCATCTACAACGCCACTCTCTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTTGACAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCATTCTCTGCTCATGCCGTTTTTGTGACAGCAGTTATCCTCTTCCAAATTGCAATCTATGAACGAGGAAGCCAGAAAGTATCTAAAATTGCAGTTGGAATTGTGGTTGCTGTGTGGCTATTTGCTGCAATTTGTTTCTTTGTAGCCCTGCCGACTCATTCTTGGCTTTGGCTCATCTCCATCTTCAACTCAATTCAAGTGTTTATAACGGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATTTTTCGGGAGGAGTTGGAAGCTATGCACAAATGGCTGTGCAATCTATTGATCAAGATTCTTGGGTGAACTTTTATGGAAACATAGGGAAGACACTGCTATCTTTGATATGTGTATCATTTGATATTCTTTTCATTTTCCAACATTTTGTTCTGTATCCTTCCAAGAAGGCACTGATATCTCCTAAAGTTGTCATCAGCAAGGAGAACTTGGAGCCCCTTGTCAGTTCTGATAGTCACCAAGTGTCTGGACATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

278

Amino Acids

31.19

Weight (kDa)

9.08

Isoelectric Point (pI)

28.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	15 - 70	2.7e-16	PQ loop repeat
PQ-loop	PF04193	153 - 209	5.8e-15	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AccBSI	CCGCTC	1 cut(s)	28
AciI	CCGC	2 cut(s)	26, 213
AcuI	CTGAAG	1 cut(s)	190
AdeI	CACNNNGTG	1 cut(s)	817
AfaI	GTAC	2 cut(s)	230, 242
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	3 cut(s)	106, 469, 479
AjnI	CCWGG	1 cut(s)	510
AjuI	GAANNNNNNNTTGG	2 cut(s)	708, 740
AluBI	AGCT	3 cut(s)	210, 269, 597
AluI	AGCT	3 cut(s)	210, 269, 597
Alw21I	GWGCWC	2 cut(s)	156, 542
Ama87I	CYCGRG	1 cut(s)	29
ApeKI	GCWGC	2 cut(s)	269, 407
ArsI	GACNNNNNNTTYG	2 cut(s)	158, 190
AspS9I	GGNCC	1 cut(s)	75
AsuHPI	GGTGA	2 cut(s)	652, 803
AvaI	CYCGRG	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	75
BanII	GRGCYC	1 cut(s)	792
BbsI	GAAGAC	1 cut(s)	671
Bbv12I	GWGCWC	2 cut(s)	156, 542
BbvI	GCAGC	2 cut(s)	256, 394
BccI	CCATC	2 cut(s)	470, 539
BceAI	ACGGC	2 cut(s)	200, 284
BciT130I	CCWGG	1 cut(s)	512
BciVI	GTATCC	1 cut(s)	741
BclI	TGATCA	1 cut(s)	625
BfmI	CTRYAG	1 cut(s)	264
BfuI	GTATCC	1 cut(s)	741
BisI	GCNGC	2 cut(s)	270, 408
BlpI	GCTNAGC	1 cut(s)	134
BlsI	GCNGC	2 cut(s)	271, 409
BmcAI	AGTACT	1 cut(s)	230
Bme1390I	CCNGG	1 cut(s)	512
Bme18I	GGWCC	1 cut(s)	75
BmeT110I	CYCGRG	1 cut(s)	29
BmgT120I	GGNCC	1 cut(s)	75
BmiI	GGNNCC	2 cut(s)	85, 789
BmrFI	CCNGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	17, 147
BpiI	GAAGAC	1 cut(s)	671
Bpu1102I	GCTNAGC	1 cut(s)	134
BpuEI	CTTGAG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	510
BsaXI	ACNNNNNCTCC	2 cut(s)	194, 224
BseBI	CCWGG	1 cut(s)	512
BseDI	CCNNGG	1 cut(s)	510
BseMII	CTCAG	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	600
BseXI	GCAGC	2 cut(s)	256, 394
BsiHKAI	GWGCWC	2 cut(s)	156, 542
BsiHKCI	CYCGRG	1 cut(s)	29
BsmI	GAATGC	1 cut(s)	284
BsoBI	CYCGRG	1 cut(s)	29
Bsp1286I	GDGCHC	3 cut(s)	156, 542, 792
Bsp143I	GATC	2 cut(s)	33, 625
Bsp1720I	GCTNAGC	1 cut(s)	134
BspACI	CCGC	2 cut(s)	26, 213
BspCNI	CTCAG	1 cut(s)	126
BspLI	GGNNCC	2 cut(s)	85, 789
BsrBI	CCGCTC	1 cut(s)	28
BssECI	CCNNGG	1 cut(s)	510
BssMI	GATC	2 cut(s)	33, 625
Bst2UI	CCWGG	1 cut(s)	512
Bst4CI	ACNGT	2 cut(s)	245, 493
Bst6I	CTCTTC	1 cut(s)	329
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstDEI	CTNAG	1 cut(s)	134
BstKTI	GATC	2 cut(s)	36, 628
BstMBI	GATC	2 cut(s)	33, 625
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 608
BstNI	CCWGG	1 cut(s)	512
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	510
BstSFI	CTRYAG	1 cut(s)	264
BstV1I	GCAGC	2 cut(s)	256, 394
BstV2I	GAAGAC	1 cut(s)	671
BstXI	CCANNNNNNTGG	1 cut(s)	821
BsuI	GTATCC	1 cut(s)	741
BtsI	GCAGTG	1 cut(s)	668
BtsIMutI	CAGTG	2 cut(s)	668, 746
Cfr13I	GGNCC	1 cut(s)	75
Csp6I	GTAC	2 cut(s)	229, 241
CviAII	CATG	3 cut(s)	296, 520, 827
CviQI	GTAC	2 cut(s)	229, 241
DdeI	CTNAG	1 cut(s)	134
DpnI	GATC	2 cut(s)	35, 627
DpnII	GATC	2 cut(s)	33, 625
DraIII	CACNNNGTG	1 cut(s)	817
Eam1104I	CTCTTC	1 cut(s)	329
EarI	CTCTTC	1 cut(s)	329
EciI	GGCGGA	1 cut(s)	202
Eco24I	GRGCYC	1 cut(s)	792
Eco32I	GATATC	1 cut(s)	753
Eco47I	GGWCC	1 cut(s)	75
Eco57I	CTGAAG	1 cut(s)	190
Eco88I	CYCGRG	1 cut(s)	29
EcoRII	CCWGG	1 cut(s)	510
EcoRV	GATATC	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	792
FaeI	CATG	3 cut(s)	299, 523, 830
FalI	AAGNNNNNCTT	4 cut(s)	215, 247, 767, 799
FatI	CATG	3 cut(s)	295, 519, 826
FbaI	TGATCA	1 cut(s)	625
Fnu4HI	GCNGC	2 cut(s)	270, 408
FriOI	GRGCYC	1 cut(s)	792
Fsp4HI	GCNGC	2 cut(s)	270, 408
GluI	GCNGC	2 cut(s)	270, 408
Hin1II	CATG	3 cut(s)	299, 523, 830
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HinfI	GANTC	3 cut(s)	22, 436, 632
HphI	GGTGA	2 cut(s)	652, 803
Hpy166II	GTNNAC	2 cut(s)	60, 643
Hpy188I	TCNGA	4 cut(s)	117, 222, 251, 805
Hpy188III	TCNNGA	6 cut(s)	31, 103, 163, 582, 629, 822
Hpy8I	GTNNAC	2 cut(s)	60, 643
Hpy99I	CGWCG	3 cut(s)	83, 117, 178
HpyAV	CCTTC	3 cut(s)	73, 736, 744
HpyCH4III	ACNGT	2 cut(s)	245, 493
HpyCH4IV	ACGT	1 cut(s)	68
HpyCH4V	TGCA	7 cut(s)	272, 284, 335, 374, 410, 602, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 608
HpyF3I	CTNAG	1 cut(s)	134
HpySE526I	ACGT	1 cut(s)	68
Hsp92II	CATG	3 cut(s)	299, 523, 830
Ksp22I	TGATCA	1 cut(s)	625
Kzo9I	GATC	2 cut(s)	33, 625
LmnI	GCTCC	3 cut(s)	89, 215, 787
LpnPI	CCDG	7 cut(s)	58, 276, 368, 443, 497, 524, 807
Lsp1109I	GCAGC	2 cut(s)	256, 394
LweI	GCATC	2 cut(s)	17, 147
MaeII	ACGT	1 cut(s)	68
MaeIII	GTNAC	2 cut(s)	307, 809
MalI	GATC	2 cut(s)	35, 627
MbiI	CCGCTC	1 cut(s)	28
MboI	GATC	2 cut(s)	33, 625
MboII	GAAGA	3 cut(s)	316, 457, 676
MhlI	GDGCHC	3 cut(s)	156, 542, 792
MluCI	AATT	6 cut(s)	157, 330, 369, 381, 411, 474
MlyI	GAGTC	1 cut(s)	430
MmeI	TCCRAC	4 cut(s)	95, 358, 571, 739
MnlI	CCTC	4 cut(s)	102, 332, 341, 578
MseI	TTAA	2 cut(s)	147, 551
MspR9I	CCNGG	1 cut(s)	512
Mva1269I	GAATGC	1 cut(s)	284
MvaI	CCWGG	1 cut(s)	512
MwoI	GCNNNNNNNGC	2 cut(s)	290, 608
NdeII	GATC	2 cut(s)	33, 625
NlaIII	CATG	3 cut(s)	299, 523, 830
NlaIV	GGNNCC	2 cut(s)	85, 789
NmuCI	GTSAC	2 cut(s)	307, 809
NspI	RCATGY	1 cut(s)	830
PaeR7I	CTCGAG	1 cut(s)	29
PciI	ACATGT	1 cut(s)	826
PcsI	WCGNNNNNNNCGW	2 cut(s)	17, 170
PctI	GAATGC	1 cut(s)	284
PfeI	GAWTC	2 cut(s)	22, 632
PkrI	GCNGC	2 cut(s)	271, 409
PleI	GAGTC	1 cut(s)	430
PpsI	GAGTC	1 cut(s)	430
PscI	ACATGT	1 cut(s)	826
PsiI	TTATAA	1 cut(s)	488
Psp6I	CCWGG	1 cut(s)	510
PspGI	CCWGG	1 cut(s)	510
PspN4I	GGNNCC	2 cut(s)	85, 789
PspPI	GGNCC	1 cut(s)	75
RsaI	GTAC	2 cut(s)	230, 242
RsaNI	GTAC	2 cut(s)	229, 241
SaqAI	TTAA	2 cut(s)	147, 551
SatI	GCNGC	2 cut(s)	270, 408
Sau3AI	GATC	2 cut(s)	33, 625
Sau96I	GGNCC	1 cut(s)	75
ScaI	AGTACT	1 cut(s)	230
SchI	GAGTC	1 cut(s)	430
ScrFI	CCNGG	1 cut(s)	512
SduI	GDGCHC	3 cut(s)	156, 542, 792
SetI	ASST	7 cut(s)	65, 71, 153, 212, 265, 271, 599
SfaNI	GCATC	2 cut(s)	17, 147
SfcI	CTRYAG	1 cut(s)	264
Sfr274I	CTCGAG	1 cut(s)	29
SinI	GGWCC	1 cut(s)	75
SlaI	CTCGAG	1 cut(s)	29
SmlI	CTYRAG	2 cut(s)	29, 93
SmoI	CTYRAG	2 cut(s)	29, 93
Sse9I	AATT	6 cut(s)	157, 330, 369, 381, 411, 474
SsiI	CCGC	2 cut(s)	26, 213
StyD4I	CCNGG	1 cut(s)	510
TaaI	ACNGT	2 cut(s)	245, 493
TaiI	ACGT	1 cut(s)	71
TaqI	TCGA	3 cut(s)	20, 30, 141
TasI	AATT	6 cut(s)	157, 330, 369, 381, 411, 474
TatI	WGTACW	1 cut(s)	228
TfiI	GAWTC	2 cut(s)	22, 632
Tru1I	TTAA	2 cut(s)	147, 551
Tru9I	TTAA	2 cut(s)	147, 551
TscAI	CASTG	2 cut(s)	675, 753
TseFI	GTSAC	2 cut(s)	307, 809
TseI	GCWGC	2 cut(s)	269, 407
Tsp45I	GTSAC	2 cut(s)	307, 809
TspDTI	ATGAA	4 cut(s)	357, 517, 536, 697
TspGWI	ACGGA	1 cut(s)	67
TspRI	CASTG	2 cut(s)	675, 753
VpaK11BI	GGWCC	1 cut(s)	75
XceI	RCATGY	1 cut(s)	830
XhoI	CTCGAG	1 cut(s)	29
ZrmI	AGTACT	1 cut(s)	230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.