RchiOBHm_Chr2g0174261

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0001326
Physical Location & Seq
Reverse (-)
86905978 .. 86908871
2894 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54142

Sequence Viewer

Length: 834 bp
ATGGCGTCTTGGAATTCAGTCCCACTCGAAATCACATACCAAGTTCTGGGTTGGTTGGCCTTCATTTCATGGTCCATCAGCTTTTACCCACAAGTCATCTTAAATTTTCGCAGAAAAAGTGTTATTGGGTTGAACTTCGATTTCGTGCTACTGAATTTGACCAAGCATTCGTCGTATCTCATTTACAACGCCACTCTCTACTTCAGCTCCGCCGTTCAAAAACAGTACTTGGAGAAATATGGACTCGGAGAGAATGCAGATGATACCGGTGCAGCGAATGATGTTGCGTTTTCTATTCATGCTATTTTGCTGACAGCAATTACCTTGTTCCAGGTTGTGATATACGAACGTGGAAGTCAGAAGGTGTCCAGGATTTCCATTGGAATTGTTGCTGCCGTTTGGTTAGGTGCTGCAGTTTGTTTCTTCGTAGCTTTGCCAACCCATTCTTGGCTCTGGCTCATTTCCATTTTCAACTCAATTCAAGTTTTTATGACAGCCATCAAATATATTCCTCAGGCAATCTTCAACTTCACGCGGAAGAGTACAGTTGGGTTTAGCATTGGCAACATTTTACTCGACTTTTCTGGAGGGGTGGCAAATTATGCACAAATGGGTGTGCAGTCCATAGATCAAGGTTCTTGGGTGAACTTTTATGGAAATATGGGGAAGACATTGCTGTCTTTGATATCAATCTTCTTTGACCTTCTCTTCATGGGTCAGCATTTCGTACTGTATCCTGCCAAGGGAGCAACAATCTCTTCTAAAATAAGCAAGGAGGAGAGCGCGGAGCCACTCGTTAAGTCGTCTGATGACCCAGTATCTGAAAATTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

277

Amino Acids

30.79

Weight (kDa)

6.9

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 14 - 69 5.7e-18 PQ loop repeat
PQ-loop PF04193 154 - 206 1.9e-14 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 676
AccB7I CCANNNNNTGG 1 cut(s) 46
AccII CGCG 2 cut(s) 535, 785
AciI CCGC 3 cut(s) 210, 535, 785
AcsI RAATTY 4 cut(s) 13, 103, 154, 826
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 3 cut(s) 227, 544, 729
AfiI CCNNNNNNNGG 3 cut(s) 46, 447, 743
AgeI ACCGGT 1 cut(s) 266
AgsI TTSAA 5 cut(s) 133, 218, 472, 482, 526
AjnI CCWGG 2 cut(s) 330, 368
AluBI AGCT 3 cut(s) 81, 207, 431
AluI AGCT 3 cut(s) 81, 207, 431
AlwNI CAGNNNCTG 1 cut(s) 821
AoxI GGCC 1 cut(s) 57
ApeKI GCWGC 3 cut(s) 272, 392, 410
ApoI RAATTY 4 cut(s) 13, 103, 154, 826
ArsI GACNNNNNNTTYG 2 cut(s) 151, 183
AsiGI ACCGGT 1 cut(s) 266
AspLEI GCGC 1 cut(s) 785
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 655
AvaII GGWCC 1 cut(s) 72
AxyI CCTNAGG 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 674
BbvI GCAGC 3 cut(s) 284, 379, 397
BccI CCATC 2 cut(s) 83, 506
BceAI ACGGC 2 cut(s) 197, 380
BciT130I CCWGG 2 cut(s) 332, 370
BciVI GTATCC 1 cut(s) 744
BfmI CTRYAG 1 cut(s) 411
BfuI GTATCC 1 cut(s) 744
BisI GCNGC 3 cut(s) 273, 393, 411
BlsI GCNGC 3 cut(s) 274, 394, 412
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 332, 370
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 2 cut(s) 332, 370
BmrI ACTGGG 1 cut(s) 809
BmuI ACTGGG 1 cut(s) 809
BpiI GAAGAC 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 606
BsaBI GATNNNNATC 1 cut(s) 689
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 1 cut(s) 741
BsaWI WCCGGW 1 cut(s) 266
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 3 cut(s) 46, 447, 743
Bse118I RCCGGY 1 cut(s) 266
Bse1I ACTGG 1 cut(s) 815
Bse21I CCTNAGG 1 cut(s) 513
Bse3DI GCAATG 1 cut(s) 671
Bse8I GATNNNNATC 1 cut(s) 689
BseBI CCWGG 2 cut(s) 332, 370
BseDI CCNNGG 1 cut(s) 741
BseJI GATNNNNATC 1 cut(s) 689
BseLI CCNNNNNNNGG 3 cut(s) 46, 447, 743
BseMI GCAATG 1 cut(s) 671
BseMII CTCAG 1 cut(s) 527
BseNI ACTGG 1 cut(s) 815
BseRI GAGGAG 1 cut(s) 791
BseXI GCAGC 3 cut(s) 284, 379, 397
BsgI GTGCAG 2 cut(s) 291, 638
Bsh1236I CGCG 2 cut(s) 535, 785
BshFI GGCC 1 cut(s) 59
BshTI ACCGGT 1 cut(s) 266
BsiSI CCGG 1 cut(s) 267
BslFI GGGAC 1 cut(s) 5
BslI CCNNNNNNNGG 3 cut(s) 46, 447, 743
BsmFI GGGAC 1 cut(s) 5
BsmI GAATGC 2 cut(s) 166, 259
BsnI GGCC 1 cut(s) 59
Bsp143I GATC 1 cut(s) 628
BspACI CCGC 3 cut(s) 210, 535, 785
BspANI GGCC 1 cut(s) 59
BspCNI CTCAG 1 cut(s) 526
BspFNI CGCG 2 cut(s) 535, 785
BspLI GGNNCC 1 cut(s) 789
BspMAI CTGCAG 1 cut(s) 415
BsrDI GCAATG 1 cut(s) 671
BsrFI RCCGGY 1 cut(s) 266
BsrI ACTGG 1 cut(s) 815
BssAI RCCGGY 1 cut(s) 266
BssECI CCNNGG 1 cut(s) 741
BssMI GATC 1 cut(s) 628
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 741
Bst2UI CCWGG 2 cut(s) 332, 370
Bst4CI ACNGT 3 cut(s) 225, 547, 732
Bst6I CTCTTC 3 cut(s) 533, 713, 763
BstACI GRCGYC 1 cut(s) 5
BstAPI GCANNNNNTGC 1 cut(s) 602
BstDEI CTNAG 1 cut(s) 513
BstFNI CGCG 2 cut(s) 535, 785
BstHHI GCGC 1 cut(s) 785
BstKTI GATC 1 cut(s) 631
BstMBI GATC 1 cut(s) 628
BstMWI GCNNNNNNNGC 2 cut(s) 602, 746
BstNI CCWGG 2 cut(s) 332, 370
BstSCI CCNGG 2 cut(s) 330, 368
BstSFI CTRYAG 1 cut(s) 411
BstUI CGCG 2 cut(s) 535, 785
BstV1I GCAGC 3 cut(s) 284, 379, 397
BstV2I GAAGAC 1 cut(s) 674
Bsu36I CCTNAGG 1 cut(s) 513
BsuI GTATCC 1 cut(s) 744
BsuRI GGCC 1 cut(s) 59
CaiI CAGNNNCTG 1 cut(s) 821
CfoI GCGC 1 cut(s) 785
Cfr10I RCCGGY 1 cut(s) 266
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 3 cut(s) 226, 543, 728
CspAI ACCGGT 1 cut(s) 266
CviAII CATG 3 cut(s) 69, 299, 712
CviJI RGCY 8 cut(s) 59, 81, 207, 431, 451, 457, 497, 790
CviKI_1 RGCY 8 cut(s) 59, 81, 207, 431, 451, 457, 497, 790
CviQI GTAC 3 cut(s) 226, 543, 728
DdeI CTNAG 1 cut(s) 513
DpnI GATC 1 cut(s) 630
DpnII GATC 1 cut(s) 628
DrdI GACNNNNNNGTC 1 cut(s) 676
DseDI GACNNNNNNGTC 1 cut(s) 676
Eam1104I CTCTTC 3 cut(s) 533, 713, 763
EarI CTCTTC 3 cut(s) 533, 713, 763
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 741
Eco32I GATATC 1 cut(s) 687
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 187
Eco81I CCTNAGG 1 cut(s) 513
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 2 cut(s) 330, 368
EcoRV GATATC 1 cut(s) 687
EcoT14I CCWWGG 1 cut(s) 741
ErhI CCWWGG 1 cut(s) 741
FaeI CATG 3 cut(s) 72, 302, 715
FaqI GGGAC 1 cut(s) 5
FatI CATG 3 cut(s) 68, 298, 711
Fnu4HI GCNGC 3 cut(s) 273, 393, 411
Fsp4HI GCNGC 3 cut(s) 273, 393, 411
GlaI GCGC 1 cut(s) 784
GluI GCNGC 3 cut(s) 273, 393, 411
GsuI CTGGAG 1 cut(s) 606
HaeIII GGCC 1 cut(s) 59
HapII CCGG 1 cut(s) 267
HhaI GCGC 1 cut(s) 785
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 3 cut(s) 72, 302, 715
Hin6I GCGC 1 cut(s) 783
HinP1I GCGC 1 cut(s) 783
HinfI GANTC 1 cut(s) 243
HpaII CCGG 1 cut(s) 267
HphI GGTGA 1 cut(s) 655
Hpy166II GTNNAC 1 cut(s) 646
Hpy188I TCNGA 4 cut(s) 248, 360, 808, 823
Hpy188III TCNNGA 1 cut(s) 585
Hpy8I GTNNAC 1 cut(s) 646
Hpy99I CGWCG 1 cut(s) 175
HpyAV CCTTC 3 cut(s) 70, 355, 713
HpyCH4III ACNGT 3 cut(s) 225, 547, 732
HpyCH4IV ACGT 1 cut(s) 349
HpyCH4V TGCA 5 cut(s) 257, 272, 413, 605, 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 602, 746
HpyF3I CTNAG 1 cut(s) 513
HpySE526I ACGT 1 cut(s) 349
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 3 cut(s) 72, 302, 715
HspAI GCGC 1 cut(s) 783
Kzo9I GATC 1 cut(s) 628
LmnI GCTCC 3 cut(s) 212, 746, 787
Lsp1109I GCAGC 3 cut(s) 284, 379, 397
MaeII ACGT 1 cut(s) 349
MalI GATC 1 cut(s) 630
MboI GATC 1 cut(s) 628
MboII GAAGA 7 cut(s) 415, 514, 550, 679, 685, 700, 750
MluCI AATT 8 cut(s) 13, 103, 154, 318, 384, 477, 598, 826
MlyI GAGTC 1 cut(s) 237
MnlI CCTC 3 cut(s) 522, 581, 769
MseI TTAA 2 cut(s) 101, 798
MspI CCGG 1 cut(s) 267
MspR9I CCNGG 2 cut(s) 332, 370
Mva1269I GAATGC 2 cut(s) 166, 259
MvaI CCWGG 2 cut(s) 332, 370
MvnI CGCG 2 cut(s) 535, 785
MwoI GCNNNNNNNGC 2 cut(s) 602, 746
NdeII GATC 1 cut(s) 628
NlaIII CATG 3 cut(s) 72, 302, 715
NlaIV GGNNCC 1 cut(s) 789
PctI GAATGC 2 cut(s) 166, 259
PflMI CCANNNNNTGG 1 cut(s) 46
PfoI TCCNGGA 1 cut(s) 368
PinAI ACCGGT 1 cut(s) 266
PkrI GCNGC 3 cut(s) 274, 394, 412
PleI GAGTC 1 cut(s) 237
PpsI GAGTC 1 cut(s) 237
Psp6I CCWGG 2 cut(s) 330, 368
PspGI CCWGG 2 cut(s) 330, 368
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 1 cut(s) 821
RsaI GTAC 3 cut(s) 227, 544, 729
RsaNI GTAC 3 cut(s) 226, 543, 728
SaqAI TTAA 2 cut(s) 101, 798
SatI GCNGC 3 cut(s) 273, 393, 411
Sau3AI GATC 1 cut(s) 628
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 237
ScrFI CCNGG 2 cut(s) 332, 370
SfcI CTRYAG 1 cut(s) 411
SinI GGWCC 1 cut(s) 72
Sse9I AATT 8 cut(s) 13, 103, 154, 318, 384, 477, 598, 826
SsiI CCGC 3 cut(s) 210, 535, 785
StyD4I CCNGG 2 cut(s) 330, 368
StyI CCWWGG 1 cut(s) 741
TaaI ACNGT 3 cut(s) 225, 547, 732
TaiI ACGT 1 cut(s) 352
TaqI TCGA 3 cut(s) 27, 138, 576
TasI AATT 8 cut(s) 13, 103, 154, 318, 384, 477, 598, 826
TatI WGTACW 2 cut(s) 225, 542
Tru1I TTAA 2 cut(s) 101, 798
Tru9I TTAA 2 cut(s) 101, 798
TseI GCWGC 3 cut(s) 272, 392, 410
TspDTI ATGAA 4 cut(s) 52, 57, 287, 700
Van91I CCANNNNNTGG 1 cut(s) 46
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 4 cut(s) 13, 103, 154, 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 444
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.