pycom111g01570

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0001326
Physical Location & Seq
Reverse (-)
977646 .. 980180
2535 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g01570.3

Sequence Viewer

Length: 792 bp
ATGGCGTCGTGGAACTCGACTCCGCTGGAAATCACGTACGAAGTGCTGGGATGGATGGCGTTCGTGAGTTGGTCCATCAGCTTCTACCCGCAAGTCATCTTGAATTTCCGCCGGAAAAGTGTTGTGGGGCTGAACTTCGATTTCGTGGTGTTGAATTTGACGAAGCACTCCTCCTATCTCATCTACAACGCCAGTCTCTACTTCAGCTCCGCCGTACAAAAGCAGTACTTCAAAAAGTACGGCGAGAAACAGATGATACCTGTTGCAGCAAATGACGTCGCTTTCTCTTGTCATGCTGTTTTACTGACGGCAGTTACCCTGTACCAAATTGCAATCTATGAACGTGGAAATCAGAAGGTCTCCAAGATTTCCATTGGAATTGTTGCTGTCGTGTGGTTAGCTGCTGCAGTTTGTGTTTTCGTAGCTTTGCCAAGGCATTCCTGGCTTTGGTTGATTTCCGTTTTCAACTCAATTCAAGTTTCTATGACATGCATCAAATATATTCCCCAGGCGGTCATGAACTTCCTTCGAAAGAGCACAGATGGGTTCAGCATTGGCAACATTTTGCTTGACTTCTCCGGAGGGGCAGCTAGTTATGTGCAAATGGTCATGCAGTCTATAGATCAACATTCTTGGGTGAACTTCTATGGAAATATCGGAAAGACACTGCTGTCTCTGATATCTATCTTCTTCGACCTTCTGTTCATGTGTCAACATTTCGTGCTGTATCGCGGCAAGAATAGTGAAGAACTTGTCAAGACTTCCGATGAACCAGTTTCGGAAAATGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

264

Amino Acids

29.77

Weight (kDa)

8.79

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 670
AatII GACGTC 1 cut(s) 279
AccII CGCG 1 cut(s) 732
AccIII TCCGGA 1 cut(s) 578
AciI CCGC 6 cut(s) 23, 89, 109, 210, 512, 732
AcsI RAATTY 2 cut(s) 103, 154
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 2 cut(s) 5, 276
AfaI GTAC 5 cut(s) 38, 216, 227, 239, 323
AfiI CCNNNNNNNGG 1 cut(s) 447
AgsI TTSAA 5 cut(s) 103, 154, 232, 466, 476
AjnI CCWGG 2 cut(s) 440, 507
AluBI AGCT 5 cut(s) 81, 207, 401, 425, 590
AluI AGCT 5 cut(s) 81, 207, 401, 425, 590
Alw21I GWGCWC 1 cut(s) 539
Alw26I GTCTC 3 cut(s) 200, 364, 678
Aor13HI TCCGGA 1 cut(s) 578
ApeKI GCWGC 4 cut(s) 266, 401, 404, 587
ApoI RAATTY 2 cut(s) 103, 154
AspS9I GGNCC 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 649
AsuII TTCGAA 1 cut(s) 529
AvaII GGWCC 1 cut(s) 72
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 4 cut(s) 278, 388, 391, 599
BccI CCATC 4 cut(s) 45, 49, 83, 536
BceAI ACGGC 3 cut(s) 197, 256, 324
BciT130I CCWGG 2 cut(s) 442, 509
BcoDI GTCTC 3 cut(s) 200, 364, 678
BfaI CTAG 1 cut(s) 591
BfmI CTRYAG 2 cut(s) 405, 618
BisI GCNGC 5 cut(s) 267, 402, 405, 588, 733
BlsI GCNGC 5 cut(s) 268, 403, 406, 589, 734
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 2 cut(s) 442, 509
Bme18I GGWCC 1 cut(s) 72
BmgT120I GGNCC 1 cut(s) 72
BmrFI CCNGG 2 cut(s) 442, 509
BmsI GCATC 1 cut(s) 501
Bpu14I TTCGAA 1 cut(s) 529
BsaAI YACGTR 1 cut(s) 36
BsaBI GATNNNNATC 1 cut(s) 683
BsaHI GRCGYC 2 cut(s) 5, 276
BsaI GGTCTC 1 cut(s) 364
BsaJI CCNNGG 2 cut(s) 431, 507
BsaWI WCCGGW 1 cut(s) 578
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 447
Bse1I ACTGG 2 cut(s) 192, 773
Bse8I GATNNNNATC 1 cut(s) 683
BseAI TCCGGA 1 cut(s) 578
BseBI CCWGG 2 cut(s) 442, 509
BseDI CCNNGG 2 cut(s) 431, 507
BseGI GGATG 2 cut(s) 56, 60
BseJI GATNNNNATC 1 cut(s) 683
BseLI CCNNNNNNNGG 1 cut(s) 447
BseNI ACTGG 2 cut(s) 192, 773
BseRI GAGGAG 1 cut(s) 160
BseXI GCAGC 4 cut(s) 278, 388, 391, 599
BseYI CCCAGC 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 732
BsiHKAI GWGCWC 1 cut(s) 539
BsiSI CCGG 2 cut(s) 112, 579
BsiWI CGTACG 1 cut(s) 36
BslI CCNNNNNNNGG 1 cut(s) 447
BsmAI GTCTC 3 cut(s) 200, 364, 678
BsmI GAATGC 1 cut(s) 436
Bso31I GGTCTC 1 cut(s) 364
Bsp119I TTCGAA 1 cut(s) 529
Bsp1286I GDGCHC 1 cut(s) 539
Bsp13I TCCGGA 1 cut(s) 578
Bsp143I GATC 1 cut(s) 622
BspACI CCGC 6 cut(s) 23, 89, 109, 210, 512, 732
BspEI TCCGGA 1 cut(s) 578
BspFNI CGCG 1 cut(s) 732
BspHI TCATGA 1 cut(s) 516
BspMAI CTGCAG 1 cut(s) 409
BspT104I TTCGAA 1 cut(s) 529
BspTNI GGTCTC 1 cut(s) 364
BsrI ACTGG 2 cut(s) 192, 773
BssECI CCNNGG 2 cut(s) 431, 507
BssMI GATC 1 cut(s) 622
BssNI GRCGYC 2 cut(s) 5, 276
BssT1I CCWWGG 1 cut(s) 431
Bst2UI CCWGG 2 cut(s) 442, 509
BstACI GRCGYC 2 cut(s) 5, 276
BstBAI YACGTR 1 cut(s) 36
BstBI TTCGAA 1 cut(s) 529
BstF5I GGATG 2 cut(s) 56, 60
BstFNI CGCG 1 cut(s) 732
BstKTI GATC 1 cut(s) 625
BstMAI GTCTC 3 cut(s) 200, 364, 678
BstMBI GATC 1 cut(s) 622
BstMWI GCNNNNNNNGC 1 cut(s) 442
BstNI CCWGG 2 cut(s) 442, 509
BstNSI RCATGY 1 cut(s) 492
BstSCI CCNGG 2 cut(s) 440, 507
BstSFI CTRYAG 2 cut(s) 405, 618
BstUI CGCG 1 cut(s) 732
BstV1I GCAGC 4 cut(s) 278, 388, 391, 599
BtsCI GGATG 2 cut(s) 56, 60
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 665
CciI TCATGA 1 cut(s) 516
Cfr13I GGNCC 1 cut(s) 72
Csp6I GTAC 5 cut(s) 37, 215, 226, 238, 322
CviAII CATG 5 cut(s) 293, 489, 517, 610, 706
CviJI RGCY 7 cut(s) 81, 130, 207, 401, 425, 445, 590
CviKI_1 RGCY 7 cut(s) 81, 130, 207, 401, 425, 445, 590
CviQI GTAC 5 cut(s) 37, 215, 226, 238, 322
DpnI GATC 1 cut(s) 624
DpnII GATC 1 cut(s) 622
DrdI GACNNNNNNGTC 1 cut(s) 670
DseDI GACNNNNNNGTC 1 cut(s) 670
EciI GGCGGA 2 cut(s) 98, 199
Eco130I CCWWGG 1 cut(s) 431
Eco31I GGTCTC 1 cut(s) 364
Eco32I GATATC 1 cut(s) 681
Eco47I GGWCC 1 cut(s) 72
Eco57I CTGAAG 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 440, 507
EcoRV GATATC 1 cut(s) 681
EcoT14I CCWWGG 1 cut(s) 431
EcoT22I ATGCAT 1 cut(s) 494
ErhI CCWWGG 1 cut(s) 431
FaeI CATG 5 cut(s) 296, 492, 520, 613, 709
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 5 cut(s) 292, 488, 516, 609, 705
FauI CCCGC 1 cut(s) 96
Fnu4HI GCNGC 5 cut(s) 267, 402, 405, 588, 733
FokI GGATG 2 cut(s) 63, 67
Fsp4HI GCNGC 5 cut(s) 267, 402, 405, 588, 733
FspBI CTAG 1 cut(s) 591
GluI GCNGC 5 cut(s) 267, 402, 405, 588, 733
GsaI CCCAGC 1 cut(s) 50
HapII CCGG 2 cut(s) 112, 579
Hin1I GRCGYC 2 cut(s) 5, 276
Hin1II CATG 5 cut(s) 296, 492, 520, 613, 709
HincII GTYRAC 1 cut(s) 713
HindII GTYRAC 1 cut(s) 713
HinfI GANTC 1 cut(s) 19
HpaII CCGG 2 cut(s) 112, 579
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 2 cut(s) 640, 713
Hpy188I TCNGA 5 cut(s) 354, 659, 678, 766, 781
Hpy188III TCNNGA 5 cut(s) 64, 100, 517, 579, 757
Hpy8I GTNNAC 2 cut(s) 640, 713
Hpy99I CGWCG 2 cut(s) 10, 281
HpyAV CCTTC 3 cut(s) 349, 536, 707
HpyCH4IV ACGT 3 cut(s) 35, 276, 343
HpyCH4V TGCA 6 cut(s) 266, 332, 407, 492, 601, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 442
HpySE526I ACGT 3 cut(s) 35, 276, 343
Hsp92I GRCGYC 2 cut(s) 5, 276
Hsp92II CATG 5 cut(s) 296, 492, 520, 613, 709
Kpn2I TCCGGA 1 cut(s) 578
Kzo9I GATC 1 cut(s) 622
LmnI GCTCC 1 cut(s) 212
Lsp1109I GCAGC 4 cut(s) 278, 388, 391, 599
LweI GCATC 1 cut(s) 501
MaeI CTAG 1 cut(s) 591
MaeII ACGT 3 cut(s) 35, 276, 343
MaeIII GTNAC 1 cut(s) 313
MalI GATC 1 cut(s) 624
MboI GATC 1 cut(s) 622
MboII GAAGA 3 cut(s) 679, 682, 758
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 5 cut(s) 103, 154, 327, 378, 471
MlyI GAGTC 1 cut(s) 13
MnlI CCTC 2 cut(s) 181, 575
Mph1103I ATGCAT 1 cut(s) 494
MroI TCCGGA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 2 cut(s) 112, 579
MspR9I CCNGG 2 cut(s) 442, 509
Mva1269I GAATGC 1 cut(s) 436
MvaI CCWGG 2 cut(s) 442, 509
MvnI CGCG 1 cut(s) 732
MwoI GCNNNNNNNGC 1 cut(s) 442
NdeII GATC 1 cut(s) 622
NlaIII CATG 5 cut(s) 296, 492, 520, 613, 709
NsiI ATGCAT 1 cut(s) 494
NspI RCATGY 1 cut(s) 492
NspV TTCGAA 1 cut(s) 529
PagI TCATGA 1 cut(s) 516
PcsI WCGNNNNNNNCGW 1 cut(s) 14
PctI GAATGC 1 cut(s) 436
Pfl23II CGTACG 1 cut(s) 36
PkrI GCNGC 5 cut(s) 268, 403, 406, 589, 734
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 36
Psp6I CCWGG 2 cut(s) 440, 507
PspFI CCCAGC 1 cut(s) 46
PspGI CCWGG 2 cut(s) 440, 507
PspLI CGTACG 1 cut(s) 36
PspPI GGNCC 1 cut(s) 72
PstI CTGCAG 1 cut(s) 409
RsaI GTAC 5 cut(s) 38, 216, 227, 239, 323
RsaNI GTAC 5 cut(s) 37, 215, 226, 238, 322
SatI GCNGC 5 cut(s) 267, 402, 405, 588, 733
Sau3AI GATC 1 cut(s) 622
Sau96I GGNCC 1 cut(s) 72
ScaI AGTACT 1 cut(s) 227
SchI GAGTC 1 cut(s) 13
ScrFI CCNGG 2 cut(s) 442, 509
SduI GDGCHC 1 cut(s) 539
SfaNI GCATC 1 cut(s) 501
SfcI CTRYAG 2 cut(s) 405, 618
SfuI TTCGAA 1 cut(s) 529
SinI GGWCC 1 cut(s) 72
Sse9I AATT 5 cut(s) 103, 154, 327, 378, 471
SsiI CCGC 6 cut(s) 23, 89, 109, 210, 512, 732
SspMI CTAG 1 cut(s) 591
StyD4I CCNGG 2 cut(s) 440, 507
StyI CCWWGG 1 cut(s) 431
TaiI ACGT 3 cut(s) 38, 279, 346
TaqI TCGA 4 cut(s) 17, 138, 529, 693
TasI AATT 5 cut(s) 103, 154, 327, 378, 471
TatI WGTACW 1 cut(s) 225
TauI GCSGC 1 cut(s) 735
TscAI CASTG 1 cut(s) 672
TseI GCWGC 4 cut(s) 266, 401, 404, 587
TspDTI ATGAA 4 cut(s) 354, 533, 694, 783
TspGWI ACGGA 1 cut(s) 448
TspRI CASTG 1 cut(s) 672
VpaK11BI GGWCC 1 cut(s) 72
XapI RAATTY 2 cut(s) 103, 154
XceI RCATGY 1 cut(s) 492
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
XspI CTAG 1 cut(s) 591
ZraI GACGTC 1 cut(s) 277
ZrmI AGTACT 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.