Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1160050 .. 1162926

Gene Structure 2877 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1018900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGCATCGTGGAACTCGACTCCGCTGGAAATCACGTACGAAGTGCTGGGATGGACGGCGTTCGTGAGTTGGTCCATCAGCTTCTACCCGCAAGTAATCTTGAATTTCCGCCGTAAAAGTGTTGTGGGGCTGAACTTCGATTTCGTGGTGTTGAATTTGACGAAGCACTCCTCCTATCTCATTTACAACGCCAGTCTCTACTTCAGCTCCGCCGTACAAAAGCAGTACTTCAAAAAGTACGGCGACAAACAGATGATACCTGTTGCAGCAAATGACGTCGCTTTCTCTTGTCATGCTGTTTTACTGACGGCAGTTACCCTGTACCAAATAGCAATCTATGAACGCGGAAATCAGAAGGTCTCCAAGATTTCCATTGGAATTGTTGCTGTCGTGTGGTTAGCTGCTGCAGTTTGTGTTTTCGTAGCTTTGCCAAGGCATTCCTGGCTTTGGTTGATTTCCGTTTTCAACTCAATTCAAGTTTCTATGACATGCATCAAATATATTCCCCAGGCGGTCATGAACTTCCTTCGAAAGAGCACAGATGGATTCAGCATTGGCAATATTTTACTTGATTTCACCGGAGGAGCAGCTAGTTATGCGCAAATGGCCATGCAGTCTACAGATCAACATTCTTGGGTGAACTTCTATGGAAATATCGGAAAGACACTGCTGTCTCTGATATCTATCTTCTTCGACCTTCTGTTCATGTGTCAACATTTCGTGCTGTATCGCGACAAGAGTAGTGAAGAACTTGTCAAGACTTCCGATGAACCAGTTTCGGAAAATGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

264

Amino Acids

29.7

Weight (kDa)

8.58

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	4.7e-18	PQ loop repeat
PQ-loop	PF04193	152 - 209	2.8e-15	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	670
AatII	GACGTC	1 cut(s)	279
Acc16I	TGCGCA	1 cut(s)	600
AccI	GTMKAC	1 cut(s)	617
AccII	CGCG	2 cut(s)	345, 732
AciI	CCGC	6 cut(s)	23, 89, 109, 210, 345, 512
AcoI	YGGCCR	1 cut(s)	606
AcsI	RAATTY	2 cut(s)	103, 154
AcuI	CTGAAG	1 cut(s)	187
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	5 cut(s)	38, 216, 227, 239, 323
AfiI	CCNNNNNNNGG	1 cut(s)	447
AgsI	TTSAA	5 cut(s)	103, 154, 232, 466, 476
AjnI	CCWGG	2 cut(s)	440, 507
AluBI	AGCT	5 cut(s)	81, 207, 401, 425, 590
AluI	AGCT	5 cut(s)	81, 207, 401, 425, 590
Alw21I	GWGCWC	1 cut(s)	539
Alw26I	GTCTC	3 cut(s)	200, 364, 678
AoxI	GGCC	1 cut(s)	606
ApeKI	GCWGC	4 cut(s)	266, 401, 404, 587
ApoI	RAATTY	2 cut(s)	103, 154
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	568, 649
AsuII	TTCGAA	1 cut(s)	529
AvaII	GGWCC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	608
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	4 cut(s)	278, 388, 391, 599
BccI	CCATC	3 cut(s)	45, 83, 536
BceAI	ACGGC	5 cut(s)	72, 96, 197, 256, 324
BciT130I	CCWGG	2 cut(s)	442, 509
BcoDI	GTCTC	3 cut(s)	200, 364, 678
BfaI	CTAG	1 cut(s)	591
BfmI	CTRYAG	2 cut(s)	405, 618
BisI	GCNGC	4 cut(s)	267, 402, 405, 588
BlsI	GCNGC	4 cut(s)	268, 403, 406, 589
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	2 cut(s)	442, 509
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmrFI	CCNGG	2 cut(s)	442, 509
BmsI	GCATC	2 cut(s)	14, 501
Bpu14I	TTCGAA	1 cut(s)	529
BsaAI	YACGTR	1 cut(s)	36
BsaBI	GATNNNNATC	1 cut(s)	683
BsaHI	GRCGYC	1 cut(s)	276
BsaI	GGTCTC	1 cut(s)	364
BsaJI	CCNNGG	2 cut(s)	431, 507
BsaWI	WCCGGW	1 cut(s)	578
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	2 cut(s)	192, 773
Bse8I	GATNNNNATC	1 cut(s)	683
BseBI	CCWGG	2 cut(s)	442, 509
BseDI	CCNNGG	2 cut(s)	431, 507
BseGI	GGATG	1 cut(s)	56
BseJI	GATNNNNATC	1 cut(s)	683
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseNI	ACTGG	2 cut(s)	192, 773
BseRI	GAGGAG	2 cut(s)	160, 597
BseXI	GCAGC	4 cut(s)	278, 388, 391, 599
BseYI	CCCAGC	1 cut(s)	46
Bsh1236I	CGCG	2 cut(s)	345, 732
BshFI	GGCC	1 cut(s)	608
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	1 cut(s)	579
BsiWI	CGTACG	1 cut(s)	36
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	3 cut(s)	200, 364, 678
BsmI	GAATGC	1 cut(s)	436
BsnI	GGCC	1 cut(s)	608
Bso31I	GGTCTC	1 cut(s)	364
Bsp119I	TTCGAA	1 cut(s)	529
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp143I	GATC	1 cut(s)	622
Bsp68I	TCGCGA	1 cut(s)	732
BspACI	CCGC	6 cut(s)	23, 89, 109, 210, 345, 512
BspANI	GGCC	1 cut(s)	608
BspFNI	CGCG	2 cut(s)	345, 732
BspHI	TCATGA	1 cut(s)	516
BspMAI	CTGCAG	1 cut(s)	409
BspT104I	TTCGAA	1 cut(s)	529
BspTNI	GGTCTC	1 cut(s)	364
BsrI	ACTGG	2 cut(s)	192, 773
BssECI	CCNNGG	2 cut(s)	431, 507
BssMI	GATC	1 cut(s)	622
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	1 cut(s)	431
Bst2UI	CCWGG	2 cut(s)	442, 509
BstACI	GRCGYC	1 cut(s)	276
BstBAI	YACGTR	1 cut(s)	36
BstBI	TTCGAA	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	56
BstFNI	CGCG	2 cut(s)	345, 732
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	1 cut(s)	625
BstMAI	GTCTC	3 cut(s)	200, 364, 678
BstMBI	GATC	1 cut(s)	622
BstMWI	GCNNNNNNNGC	3 cut(s)	442, 596, 605
BstNI	CCWGG	2 cut(s)	442, 509
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	440, 507
BstSFI	CTRYAG	2 cut(s)	405, 618
BstUI	CGCG	2 cut(s)	345, 732
BstV1I	GCAGC	4 cut(s)	278, 388, 391, 599
BsuRI	GGCC	1 cut(s)	608
BtsCI	GGATG	1 cut(s)	56
BtsI	GCAGTG	1 cut(s)	665
BtsIMutI	CAGTG	1 cut(s)	665
BtuMI	TCGCGA	1 cut(s)	732
CciI	TCATGA	1 cut(s)	516
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	5 cut(s)	37, 215, 226, 238, 322
CviAII	CATG	5 cut(s)	293, 489, 517, 610, 706
CviJI	RGCY	8 cut(s)	81, 130, 207, 401, 425, 445, 590, 608
CviKI_1	RGCY	8 cut(s)	81, 130, 207, 401, 425, 445, 590, 608
CviQI	GTAC	5 cut(s)	37, 215, 226, 238, 322
DpnI	GATC	1 cut(s)	624
DpnII	GATC	1 cut(s)	622
DrdI	GACNNNNNNGTC	1 cut(s)	670
DseDI	GACNNNNNNGTC	1 cut(s)	670
EaeI	YGGCCR	1 cut(s)	606
EciI	GGCGGA	2 cut(s)	98, 199
Eco130I	CCWWGG	1 cut(s)	431
Eco31I	GGTCTC	1 cut(s)	364
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	187
EcoRII	CCWGG	2 cut(s)	440, 507
EcoRV	GATATC	1 cut(s)	681
EcoT14I	CCWWGG	1 cut(s)	431
EcoT22I	ATGCAT	1 cut(s)	494
ErhI	CCWWGG	1 cut(s)	431
FaeI	CATG	5 cut(s)	296, 492, 520, 613, 709
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	5 cut(s)	292, 488, 516, 609, 705
FauI	CCCGC	1 cut(s)	96
FblI	GTMKAC	1 cut(s)	617
Fnu4HI	GCNGC	4 cut(s)	267, 402, 405, 588
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	4 cut(s)	267, 402, 405, 588
FspBI	CTAG	1 cut(s)	591
FspI	TGCGCA	1 cut(s)	600
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	4 cut(s)	267, 402, 405, 588
GsaI	CCCAGC	1 cut(s)	50
HaeIII	GGCC	1 cut(s)	608
HapII	CCGG	1 cut(s)	579
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	5 cut(s)	296, 492, 520, 613, 709
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HinfI	GANTC	2 cut(s)	19, 546
HpaII	CCGG	1 cut(s)	579
HphI	GGTGA	2 cut(s)	568, 649
Hpy166II	GTNNAC	3 cut(s)	618, 640, 713
Hpy188I	TCNGA	5 cut(s)	354, 659, 678, 766, 781
Hpy188III	TCNNGA	5 cut(s)	64, 100, 517, 731, 757
Hpy8I	GTNNAC	3 cut(s)	618, 640, 713
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	3 cut(s)	349, 536, 707
HpyCH4IV	ACGT	2 cut(s)	35, 276
HpyCH4V	TGCA	4 cut(s)	266, 407, 492, 613
HpyF10VI	GCNNNNNNNGC	3 cut(s)	442, 596, 605
HpySE526I	ACGT	2 cut(s)	35, 276
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	5 cut(s)	296, 492, 520, 613, 709
HspAI	GCGC	1 cut(s)	599
Kzo9I	GATC	1 cut(s)	622
LmnI	GCTCC	2 cut(s)	212, 584
Lsp1109I	GCAGC	4 cut(s)	278, 388, 391, 599
LweI	GCATC	2 cut(s)	14, 501
MaeI	CTAG	1 cut(s)	591
MaeII	ACGT	2 cut(s)	35, 276
MaeIII	GTNAC	1 cut(s)	313
MalI	GATC	1 cut(s)	624
MboI	GATC	1 cut(s)	622
MboII	GAAGA	3 cut(s)	679, 682, 758
MhlI	GDGCHC	1 cut(s)	539
MlsI	TGGCCA	1 cut(s)	608
MluCI	AATT	4 cut(s)	103, 154, 378, 471
MluNI	TGGCCA	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	13
MnlI	CCTC	2 cut(s)	181, 575
Mox20I	TGGCCA	1 cut(s)	608
Mph1103I	ATGCAT	1 cut(s)	494
MscI	TGGCCA	1 cut(s)	608
Msp20I	TGGCCA	1 cut(s)	608
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	1 cut(s)	579
MspR9I	CCNGG	2 cut(s)	442, 509
Mva1269I	GAATGC	1 cut(s)	436
MvaI	CCWGG	2 cut(s)	442, 509
MvnI	CGCG	2 cut(s)	345, 732
MwoI	GCNNNNNNNGC	3 cut(s)	442, 596, 605
NdeII	GATC	1 cut(s)	622
NlaIII	CATG	5 cut(s)	296, 492, 520, 613, 709
NruI	TCGCGA	1 cut(s)	732
NsbI	TGCGCA	1 cut(s)	600
NsiI	ATGCAT	1 cut(s)	494
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	529
PagI	TCATGA	1 cut(s)	516
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PctI	GAATGC	1 cut(s)	436
PfeI	GAWTC	1 cut(s)	546
Pfl23II	CGTACG	1 cut(s)	36
PkrI	GCNGC	4 cut(s)	268, 403, 406, 589
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	36
Psp6I	CCWGG	2 cut(s)	440, 507
PspFI	CCCAGC	1 cut(s)	46
PspGI	CCWGG	2 cut(s)	440, 507
PspLI	CGTACG	1 cut(s)	36
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	409
RruI	TCGCGA	1 cut(s)	732
RsaI	GTAC	5 cut(s)	38, 216, 227, 239, 323
RsaNI	GTAC	5 cut(s)	37, 215, 226, 238, 322
SatI	GCNGC	4 cut(s)	267, 402, 405, 588
Sau3AI	GATC	1 cut(s)	622
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	1 cut(s)	227
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	2 cut(s)	442, 509
SduI	GDGCHC	1 cut(s)	539
SfaNI	GCATC	2 cut(s)	14, 501
SfcI	CTRYAG	2 cut(s)	405, 618
SfuI	TTCGAA	1 cut(s)	529
SinI	GGWCC	1 cut(s)	72
Sse9I	AATT	4 cut(s)	103, 154, 378, 471
SsiI	CCGC	6 cut(s)	23, 89, 109, 210, 345, 512
SspI	AATATT	1 cut(s)	562
SspMI	CTAG	1 cut(s)	591
StyD4I	CCNGG	2 cut(s)	440, 507
StyI	CCWWGG	1 cut(s)	431
TaiI	ACGT	2 cut(s)	38, 279
TaqI	TCGA	4 cut(s)	17, 138, 529, 693
TasI	AATT	4 cut(s)	103, 154, 378, 471
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	546
TscAI	CASTG	1 cut(s)	672
TseI	GCWGC	4 cut(s)	266, 401, 404, 587
TspDTI	ATGAA	4 cut(s)	354, 533, 694, 783
TspGWI	ACGGA	1 cut(s)	448
TspRI	CASTG	1 cut(s)	672
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	2 cut(s)	103, 154
XceI	RCATGY	1 cut(s)	492
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
XmiI	GTMKAC	1 cut(s)	617
XspI	CTAG	1 cut(s)	591
ZraI	GACGTC	1 cut(s)	277
ZrmI	AGTACT	1 cut(s)	227
Zsp2I	ATGCAT	1 cut(s)	494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.