Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Reverse (-)

1814282 .. 1816138

Gene Structure 1857 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00078530.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCGTCGTGGAATTCAACTCCGATGGAAGTGACATACGAAGTTCTGGGATGGATAGCTTTCGTGTCTTGGTCTATCAGCTTCTACCCTCAAGTCATTTTGAATTTCCGGAGGAAAAGTGTTGTGGGGTTGAACTTCGATTTTGTGGTACTGAATTTGACAAAGCATTCTTCATATCTGATTTACAATGCGACCCTCTACTTTAGCTCCGCAGTTCAGAAGCAGTACTTCCACAAGTATGGCTCCAAACAGATGATACCTGTGGCAGCGAATGATGTTGCATTCTCTACTCATGCTGTTTTATTGACTGCACTGACCCTGATTCAAATTGCAGTCTATGAAGCAATCATGAACTTCATGCGGAAGAGCACAGATGGGTTCAGCATTGGCAATATTTTACTTGATTTTACCGGAGGCCTCACAAGTTATGCACAAATGGCTGTGCAGTCTATAGATCAACGTCTCGATATTCTTCGACCTTCTATTCATGTGTCAACATTTCCTGCTGTATCCTGCCAAGAAAGCACAGCAGATACCCCCAACAGTAGTACCAGTGAGGAAAGAACAGGGCCTATTGGCAAATCTCCTGATCATCATTACCCAGCACCTCCGGGGAATGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

207

Amino Acids

22.97

Weight (kDa)

6.58

Isoelectric Point (pI)

43.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PQ-loop	PF04193	14 - 69	4.9e-19	PQ loop repeat
PQ-loop	PF04193	116 - 152	2.5e-08	PQ loop repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	108
AciI	CCGC	2 cut(s)	210, 361
AcsI	RAATTY	3 cut(s)	13, 103, 154
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	3 cut(s)	150, 227, 550
AgsI	TTSAA	4 cut(s)	18, 103, 133, 326
AluBI	AGCT	3 cut(s)	59, 81, 207
AluI	AGCT	3 cut(s)	59, 81, 207
Alw21I	GWGCWC	1 cut(s)	371
Alw26I	GTCTC	1 cut(s)	467
Aor13HI	TCCGGA	1 cut(s)	108
AoxI	GGCC	2 cut(s)	415, 569
ApeKI	GCWGC	1 cut(s)	266
ApoI	RAATTY	3 cut(s)	13, 103, 154
AspS9I	GGNCC	1 cut(s)	569
AsuC2I	CCSGG	1 cut(s)	612
BaeI	ACNNNNGTAYC	2 cut(s)	532, 565
Bbv12I	GWGCWC	1 cut(s)	371
BbvI	GCAGC	1 cut(s)	278
BccI	CCATC	3 cut(s)	19, 45, 368
BciVI	GTATCC	1 cut(s)	520
BclI	TGATCA	1 cut(s)	589
BcnI	CCSGG	1 cut(s)	612
BcoDI	GTCTC	1 cut(s)	467
BfmI	CTRYAG	1 cut(s)	450
BfuI	GTATCC	1 cut(s)	520
BisI	GCNGC	1 cut(s)	267
BlsI	GCNGC	1 cut(s)	268
BmcAI	AGTACT	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	612
BmgT120I	GGNCC	1 cut(s)	569
BmiI	GGNNCC	1 cut(s)	244
BmrFI	CCNGG	1 cut(s)	612
BpuEI	CTTGAG	1 cut(s)	75
BpuMI	CCSGG	1 cut(s)	612
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	611
BsaWI	WCCGGW	2 cut(s)	108, 410
BsaXI	ACNNNNNCTCC	4 cut(s)	103, 133, 191, 221
Bse1I	ACTGG	1 cut(s)	552
BseAI	TCCGGA	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	611
BseGI	GGATG	1 cut(s)	56
BseNI	ACTGG	1 cut(s)	552
BseXI	GCAGC	1 cut(s)	278
BseYI	CCCAGC	1 cut(s)	601
BsgI	GTGCAG	2 cut(s)	294, 464
BshFI	GGCC	2 cut(s)	417, 571
BsiHKAI	GWGCWC	1 cut(s)	371
BsiSI	CCGG	3 cut(s)	109, 411, 611
BsmAI	GTCTC	1 cut(s)	467
BsmBI	CGTCTC	1 cut(s)	467
BsmI	GAATGC	2 cut(s)	166, 281
BsnI	GGCC	2 cut(s)	417, 571
Bsp1286I	GDGCHC	1 cut(s)	371
Bsp13I	TCCGGA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	454, 589
BspACI	CCGC	2 cut(s)	210, 361
BspANI	GGCC	2 cut(s)	417, 571
BspEI	TCCGGA	1 cut(s)	108
BspHI	TCATGA	1 cut(s)	348
BspLI	GGNNCC	1 cut(s)	244
BspQI	GCTCTTC	1 cut(s)	359
BsrI	ACTGG	1 cut(s)	552
BssECI	CCNNGG	1 cut(s)	611
BssMI	GATC	2 cut(s)	454, 589
BssNI	GRCGYC	1 cut(s)	5
Bst4CI	ACNGT	1 cut(s)	545
Bst6I	CTCTTC	1 cut(s)	359
BstACI	GRCGYC	1 cut(s)	5
BstF5I	GGATG	1 cut(s)	56
BstKTI	GATC	2 cut(s)	457, 592
BstMAI	GTCTC	1 cut(s)	467
BstMBI	GATC	2 cut(s)	454, 589
BstMWI	GCNNNNNNNGC	2 cut(s)	437, 522
BstSCI	CCNGG	1 cut(s)	610
BstSFI	CTRYAG	1 cut(s)	450
BstV1I	GCAGC	1 cut(s)	278
BstXI	CCANNNNNNTGG	1 cut(s)	239
BsuI	GTATCC	1 cut(s)	520
BsuRI	GGCC	2 cut(s)	417, 571
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	2 cut(s)	311, 559
CciI	TCATGA	1 cut(s)	348
Cfr13I	GGNCC	1 cut(s)	569
Csp6I	GTAC	3 cut(s)	149, 226, 549
CviAII	CATG	4 cut(s)	293, 349, 358, 488
CviJI	RGCY	7 cut(s)	59, 81, 207, 243, 417, 440, 571
CviKI_1	RGCY	7 cut(s)	59, 81, 207, 243, 417, 440, 571
CviQI	GTAC	3 cut(s)	149, 226, 549
DpnI	GATC	2 cut(s)	456, 591
DpnII	GATC	2 cut(s)	454, 589
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Eco147I	AGGCCT	1 cut(s)	417
EcoO109I	RGGNCCY	1 cut(s)	569
EcoRI	GAATTC	1 cut(s)	13
Esp3I	CGTCTC	1 cut(s)	467
FaeI	CATG	4 cut(s)	296, 352, 361, 491
FalI	AAGNNNNNCTT	2 cut(s)	212, 244
FatI	CATG	4 cut(s)	292, 348, 357, 487
FbaI	TGATCA	1 cut(s)	589
Fnu4HI	GCNGC	1 cut(s)	267
FokI	GGATG	1 cut(s)	63
Fsp4HI	GCNGC	1 cut(s)	267
GluI	GCNGC	1 cut(s)	267
GsaI	CCCAGC	1 cut(s)	605
HaeIII	GGCC	2 cut(s)	417, 571
HapII	CCGG	3 cut(s)	109, 411, 611
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	4 cut(s)	296, 352, 361, 491
HincII	GTYRAC	1 cut(s)	495
HindII	GTYRAC	1 cut(s)	495
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	3 cut(s)	109, 411, 611
Hpy166II	GTNNAC	1 cut(s)	495
Hpy188I	TCNGA	3 cut(s)	24, 180, 219
Hpy188III	TCNNGA	4 cut(s)	109, 349, 464, 587
Hpy8I	GTNNAC	1 cut(s)	495
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	1 cut(s)	545
HpyCH4IV	ACGT	1 cut(s)	460
HpyCH4V	TGCA	5 cut(s)	281, 311, 332, 431, 445
HpyF10VI	GCNNNNNNNGC	2 cut(s)	437, 522
HpySE526I	ACGT	1 cut(s)	460
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	4 cut(s)	296, 352, 361, 491
Kpn2I	TCCGGA	1 cut(s)	108
Ksp22I	TGATCA	1 cut(s)	589
Kzo9I	GATC	2 cut(s)	454, 589
LguI	GCTCTTC	1 cut(s)	359
LmnI	GCTCC	2 cut(s)	212, 248
Lsp1109I	GCAGC	1 cut(s)	278
MaeII	ACGT	1 cut(s)	460
MaeIII	GTNAC	1 cut(s)	31
MalI	GATC	2 cut(s)	456, 591
MboI	GATC	2 cut(s)	454, 589
MboII	GAAGA	3 cut(s)	162, 376, 464
MhlI	GDGCHC	1 cut(s)	371
MluCI	AATT	4 cut(s)	13, 103, 154, 327
MnlI	CCTC	7 cut(s)	99, 105, 206, 407, 428, 550, 618
MroI	TCCGGA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	3 cut(s)	109, 411, 611
MspR9I	CCNGG	1 cut(s)	612
Mva1269I	GAATGC	2 cut(s)	166, 281
MwoI	GCNNNNNNNGC	2 cut(s)	437, 522
NciI	CCSGG	1 cut(s)	612
NdeII	GATC	2 cut(s)	454, 589
NlaIII	CATG	4 cut(s)	296, 352, 361, 491
NlaIV	GGNNCC	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	31
PagI	TCATGA	1 cut(s)	348
PceI	AGGCCT	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	359
PctI	GAATGC	2 cut(s)	166, 281
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	1 cut(s)	268
PspFI	CCCAGC	1 cut(s)	601
PspN4I	GGNNCC	1 cut(s)	244
PspPI	GGNCC	1 cut(s)	569
RsaI	GTAC	3 cut(s)	150, 227, 550
RsaNI	GTAC	3 cut(s)	149, 226, 549
RseI	CAYNNNNRTG	1 cut(s)	237
SapI	GCTCTTC	1 cut(s)	359
SatI	GCNGC	1 cut(s)	267
Sau3AI	GATC	2 cut(s)	454, 589
Sau96I	GGNCC	1 cut(s)	569
ScaI	AGTACT	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	612
SduI	GDGCHC	1 cut(s)	371
SetI	ASST	7 cut(s)	61, 83, 209, 262, 463, 481, 610
SfcI	CTRYAG	1 cut(s)	450
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	90
SmoI	CTYRAG	1 cut(s)	90
Sse9I	AATT	4 cut(s)	13, 103, 154, 327
SseBI	AGGCCT	1 cut(s)	417
SsiI	CCGC	2 cut(s)	210, 361
SspI	AATATT	1 cut(s)	394
StuI	AGGCCT	1 cut(s)	417
StyD4I	CCNGG	1 cut(s)	610
TaaI	ACNGT	1 cut(s)	545
TaiI	ACGT	1 cut(s)	463
TaqI	TCGA	3 cut(s)	138, 465, 475
TasI	AATT	4 cut(s)	13, 103, 154, 327
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	1 cut(s)	322
TscAI	CASTG	2 cut(s)	318, 559
TseFI	GTSAC	1 cut(s)	31
TseI	GCWGC	1 cut(s)	266
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	5 cut(s)	162, 346, 354, 365, 476
TspRI	CASTG	2 cut(s)	318, 559
XapI	RAATTY	3 cut(s)	13, 103, 154
ZrmI	AGTACT	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.