Rh2CG627700

Cystinosin homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0001326
Physical Location & Seq
Forward (+)
80158049 .. 80160824
2776 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG627700.1

Sequence Viewer

Length: 684 bp
ATGGCGTCGTGGAATTCGATTCAGCTGGAGATCACATACAGAGTTCTGGGGTGGTTGACTTTCACGTTTTGGGCTGTCGGCTTCTACCCTCAAGTGTTCTTGAATTTCCGTCGAAAAAGTGTTGTGGGGCTGAGCATCGATTTTGTGGTGCTGAATTGGACGAAACACTCGTCGTATCTCATTTACAACGCCTCTCTTTACTTCAGCTCCGCCGTTCAGAAGCAGTACTTTGAAAAGTACGGTTTCGGAGAGATGATACCTGTAGCTGCAAATGATGTTGCTTTCTCTGTTCATGCCGTTTTTGTAACATCCATTATCCTTTTCCAAATTGCAACCTATGAACGAGGAAGTCAGAAAGTATCCAAGATTGCCATTGGAATCGTCTTTGGTGTGTGGCTATTTGCTGCAGTTTGCACCTTGGTTGCTCTGCCAACTCATTCTTGGCTTTGGCTCATCTCTATCTTCAACTCAATTCAAGTTTTTATGACAGTCATCAAATATACTCCCCAGGCATACATGAACTTCATAAGAAAGAGCACAGATGGATTAAGTATTTTCTTTATTCTACTTGATCTTTCGGGAGGAGTGGGAAGTTATGCACAAATGGCTGTGCAGTCTATTGATCAAGATTCTTGGGTGAACTTTTATGGAAACATAGGGAAGACACTGCTATCTTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04142 map04142
Pfam Domains
Protein Families
PQ-loop

Protein Analysis

227

Amino Acids

25.72

Weight (kDa)

9.12

Isoelectric Point (pI)

29.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PQ-loop PF04193 14 - 69 5.9e-16 PQ loop repeat
PQ-loop PF04193 152 - 208 4.9e-15 PQ loop repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 210
AcsI RAATTY 2 cut(s) 13, 103
AcuI CTGAAG 1 cut(s) 187
AcyI GRCGYC 1 cut(s) 5
AfaI GTAC 2 cut(s) 227, 239
AgsI TTSAA 4 cut(s) 103, 233, 466, 476
AjnI CCWGG 1 cut(s) 507
AluBI AGCT 3 cut(s) 25, 207, 266
AluI AGCT 3 cut(s) 25, 207, 266
Alw21I GWGCWC 1 cut(s) 539
ApeKI GCWGC 2 cut(s) 266, 404
ApoI RAATTY 2 cut(s) 13, 103
ArsI GACNNNNNNTTYG 2 cut(s) 155, 187
AsuHPI GGTGA 1 cut(s) 649
BbsI GAAGAC 1 cut(s) 668
Bbv12I GWGCWC 1 cut(s) 539
BbvI GCAGC 2 cut(s) 253, 391
BccI CCATC 1 cut(s) 536
BceAI ACGGC 2 cut(s) 197, 281
BciT130I CCWGG 1 cut(s) 509
BciVI GTATCC 1 cut(s) 370
BclI TGATCA 1 cut(s) 622
BfmI CTRYAG 2 cut(s) 261, 405
BfuI GTATCC 1 cut(s) 370
BisI GCNGC 2 cut(s) 267, 405
BlpI GCTNAGC 1 cut(s) 131
BlsI GCNGC 2 cut(s) 268, 406
BmcAI AGTACT 1 cut(s) 227
Bme1390I CCNGG 1 cut(s) 509
BmrFI CCNGG 1 cut(s) 509
BmsI GCATC 1 cut(s) 144
BpiI GAAGAC 1 cut(s) 668
BpmI CTGGAG 1 cut(s) 47
Bpu1102I GCTNAGC 1 cut(s) 131
BpuEI CTTGAG 1 cut(s) 75
Bsa29I ATCGAT 1 cut(s) 138
BsaHI GRCGYC 1 cut(s) 5
BsaJI CCNNGG 2 cut(s) 417, 507
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
BseBI CCWGG 1 cut(s) 509
BseCI ATCGAT 1 cut(s) 138
BseDI CCNNGG 2 cut(s) 417, 507
BseGI GGATG 1 cut(s) 308
BseMII CTCAG 1 cut(s) 122
BseRI GAGGAG 1 cut(s) 597
BseXI GCAGC 2 cut(s) 253, 391
BsgI GTGCAG 1 cut(s) 632
BshVI ATCGAT 1 cut(s) 138
BsiHKAI GWGCWC 1 cut(s) 539
Bsp1286I GDGCHC 1 cut(s) 539
Bsp143I GATC 3 cut(s) 30, 571, 622
Bsp1720I GCTNAGC 1 cut(s) 131
BspACI CCGC 1 cut(s) 210
BspCNI CTCAG 1 cut(s) 123
BspDI ATCGAT 1 cut(s) 138
BspMAI CTGCAG 1 cut(s) 409
BssECI CCNNGG 2 cut(s) 417, 507
BssMI GATC 3 cut(s) 30, 571, 622
BssNI GRCGYC 1 cut(s) 5
BssT1I CCWWGG 1 cut(s) 417
Bst2UI CCWGG 1 cut(s) 509
Bst4CI ACNGT 2 cut(s) 242, 490
BstACI GRCGYC 1 cut(s) 5
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 308
BstKTI GATC 3 cut(s) 33, 574, 625
BstMBI GATC 3 cut(s) 30, 571, 622
BstMWI GCNNNNNNNGC 1 cut(s) 605
BstNI CCWGG 1 cut(s) 509
BstSCI CCNGG 1 cut(s) 507
BstSFI CTRYAG 2 cut(s) 261, 405
BstV1I GCAGC 2 cut(s) 253, 391
BstV2I GAAGAC 1 cut(s) 668
Bsu15I ATCGAT 1 cut(s) 138
BsuI GTATCC 1 cut(s) 370
BsuTUI ATCGAT 1 cut(s) 138
BtsCI GGATG 1 cut(s) 308
BtsI GCAGTG 1 cut(s) 665
BtsIMutI CAGTG 1 cut(s) 665
ClaI ATCGAT 1 cut(s) 138
Csp6I GTAC 2 cut(s) 226, 238
CviAII CATG 2 cut(s) 293, 517
CviQI GTAC 2 cut(s) 226, 238
DdeI CTNAG 1 cut(s) 131
DpnI GATC 3 cut(s) 32, 573, 624
DpnII GATC 3 cut(s) 30, 571, 622
EciI GGCGGA 1 cut(s) 199
Eco130I CCWWGG 1 cut(s) 417
Eco57I CTGAAG 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 507
EcoT14I CCWWGG 1 cut(s) 417
ErhI CCWWGG 1 cut(s) 417
FaeI CATG 2 cut(s) 296, 520
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 2 cut(s) 292, 516
FbaI TGATCA 1 cut(s) 622
Fnu4HI GCNGC 2 cut(s) 267, 405
FokI GGATG 1 cut(s) 295
Fsp4HI GCNGC 2 cut(s) 267, 405
GluI GCNGC 2 cut(s) 267, 405
GsuI CTGGAG 1 cut(s) 47
Hin1I GRCGYC 1 cut(s) 5
Hin1II CATG 2 cut(s) 296, 520
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HinfI GANTC 3 cut(s) 19, 378, 629
HphI GGTGA 1 cut(s) 649
Hpy166II GTNNAC 2 cut(s) 57, 640
Hpy188I TCNGA 3 cut(s) 219, 248, 354
Hpy188III TCNNGA 3 cut(s) 100, 579, 626
Hpy8I GTNNAC 2 cut(s) 57, 640
Hpy99I CGWCG 3 cut(s) 10, 114, 175
HpyCH4III ACNGT 2 cut(s) 242, 490
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 6 cut(s) 269, 332, 407, 414, 599, 613
HpyF10VI GCNNNNNNNGC 1 cut(s) 605
HpyF3I CTNAG 1 cut(s) 131
HpySE526I ACGT 1 cut(s) 65
Hsp92I GRCGYC 1 cut(s) 5
Hsp92II CATG 2 cut(s) 296, 520
Ksp22I TGATCA 1 cut(s) 622
Kzo9I GATC 3 cut(s) 30, 571, 622
LmnI GCTCC 1 cut(s) 212
LpnPI CCDG 5 cut(s) 11, 32, 273, 494, 521
Lsp1109I GCAGC 2 cut(s) 253, 391
LweI GCATC 1 cut(s) 144
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 1 cut(s) 304
MalI GATC 3 cut(s) 32, 573, 624
MboI GATC 3 cut(s) 30, 571, 622
MboII GAAGA 2 cut(s) 454, 673
MhlI GDGCHC 1 cut(s) 539
MluCI AATT 5 cut(s) 13, 103, 154, 327, 471
MnlI CCTC 4 cut(s) 99, 202, 338, 575
MseI TTAA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 25
MspR9I CCNGG 1 cut(s) 509
MvaI CCWGG 1 cut(s) 509
MwoI GCNNNNNNNGC 1 cut(s) 605
NdeII GATC 3 cut(s) 30, 571, 622
NlaIII CATG 2 cut(s) 296, 520
PcsI WCGNNNNNNNCGW 2 cut(s) 14, 167
PfeI GAWTC 3 cut(s) 19, 378, 629
PkrI GCNGC 2 cut(s) 268, 406
Psp6I CCWGG 1 cut(s) 507
PspGI CCWGG 1 cut(s) 507
PstI CTGCAG 1 cut(s) 409
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 2 cut(s) 227, 239
RsaNI GTAC 2 cut(s) 226, 238
SaqAI TTAA 1 cut(s) 548
SatI GCNGC 2 cut(s) 267, 405
Sau3AI GATC 3 cut(s) 30, 571, 622
ScaI AGTACT 1 cut(s) 227
ScrFI CCNGG 1 cut(s) 509
SduI GDGCHC 1 cut(s) 539
SetI ASST 7 cut(s) 27, 68, 209, 262, 268, 338, 419
SfaNI GCATC 1 cut(s) 144
SfcI CTRYAG 2 cut(s) 261, 405
SmlI CTYRAG 1 cut(s) 90
SmoI CTYRAG 1 cut(s) 90
Sse9I AATT 5 cut(s) 13, 103, 154, 327, 471
SsiI CCGC 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 507
StyI CCWWGG 1 cut(s) 417
TaaI ACNGT 2 cut(s) 242, 490
TaiI ACGT 1 cut(s) 68
TaqI TCGA 3 cut(s) 17, 112, 138
TasI AATT 5 cut(s) 13, 103, 154, 327, 471
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 3 cut(s) 19, 378, 629
Tru1I TTAA 1 cut(s) 548
Tru9I TTAA 1 cut(s) 548
TscAI CASTG 1 cut(s) 672
TseI GCWGC 2 cut(s) 266, 404
TspDTI ATGAA 4 cut(s) 281, 354, 514, 533
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 672
XapI RAATTY 2 cut(s) 13, 103
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
ZrmI AGTACT 1 cut(s) 227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.