Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0001326

Physical Location & Seq

Genomic Coordinates Forward (+)

26421825 .. 26423825

Gene Structure 2001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G298400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 840 bp

ATGGCGTCGTGGAATTCACTTCAGCTGGAAATCACATACAGAGTCATGGGATGGATGGCTTTCACATGTTGGTCCGTCGGCTTCTACCCACAAGTAATATTGAATTTCCGCCGGAAAAGCGTTGTGGGTTTGAGCTTCGATTTCGTGGTGCTGAATTTGACAAAGCATTCTTCCTATCTCATTTACAACGCCACCCTCTACTTCAGCTCCGCAGTTCAAAAGCAGTACTGGGAGAAATACGGCTCCGGACAGATGATCCCTGTAGCAGTAAATGATGTTGCTTTCTCAGCTCACGCTGTTTTAATTACAGCAATTATTCTGTTCCAAATTGCAATTTACGACCGAGGAACTCAGAAGGTGTCCAAGATTGCCATCGGAATTGTCGTTGCCGTGTGGTTAGGCGCTGCAGTTTGTTTTTTCGTAGCTTTGCCAACCCATTCTTGGCTTTGGCTGATCAATATATTCAACTCAATTCAAGTTTTCATGACAGTCGTCAAATATACTCCCCAGGCATTCATGAACTTCATGCGGAAGAGCACAGATGGATTCAGCATTGGCTTTTACTTGCTTGATTTTTCTGGAGGGGTCACAAATTATGCACAAATGGCTGTGCTTTCTATAGATCAAGATTCTTGGGTGAACTTTTTTGGAAATATGGGGAAAGTACTGCTCTCTTTGATATCTGTATCCTTTGACATTCTCTTCATGTGTCAACGCTTCCTGCTGTATCCTGCCAAGAAAGCACCCATCCCTCCTCCTCCTCCTCAAATCACCAGCAAGGGGAGCTTGGAGCCACTTCTCCAGTCTTCTTCATCAGCATCACCCACTCACACTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04142 map04142

Pfam Domains

Protein Families

PQ-loop

Protein Analysis

280

Amino Acids

31.25

Weight (kDa)

9.3

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001326)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G40670
fragaria_vesca	FvH4_6g52300 FvH4_6g52311 FvH4_6g52320 FvH4_6g52320 FvH4_6g52320 FvH4_6g52360
malus_domestica	MD09G1018800.v1.1 MD09G1018900.v1.1 MD17G1019200.v1.1 MD17G1019400.v1.1
prunus_persica	Prupe.3G298300_v2.0.a1 Prupe.3G298400_v2.0.a1
pyrus_communis	pycom111g01560 pycom111g01570 pycom17g01600 pycom17g01610
rosa_chinensis	RchiOBHm_Chr2g0173831 RchiOBHm_Chr2g0173881 RchiOBHm_Chr2g0173901 RchiOBHm_Chr2g0174021 RchiOBHm_Chr2g0174261
rosa_laevigata	RLG00000022232 RLG00000022233 RLG00000022236
rosa_multiflora	Rmu_co8240537.1_g000001 Rmu_sc0003188.1_g000020 Rmu_sc0003188.1_g000025 Rmu_sc0040252.1_g000001
rosa_roxburghii	Rroxscaffold_160G00433840 Rroxscaffold_2G00078530 Rroxscaffold_2G00078550 Rroxscaffold_2G00078560
rosa_rugosa	Rorug02G0573300 Rorug02G0573400 Rorug02G0573900
rosa_samantha	Rh2AG652500 Rh2AG652600 Rh2AG656300 Rh2BG663300 Rh2BG663700 Rh2BG664500 Rh2BG667500 Rh2CG627700 Rh2CG628300 Rh2CG628400 Rh2CG628900 Rh2DG678200 Rh2DG678600 Rh2DG678700
rosa_wichuraiana	Rw2G053560 Rw2G053600 Rw2G053610 Rw2G053650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	245
AciI	CCGC	3 cut(s)	109, 210, 529
AclWI	GGATC	1 cut(s)	250
AcsI	RAATTY	3 cut(s)	13, 103, 154
AcuI	CTGAAG	2 cut(s)	5, 187
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	227, 666
AfiI	CCNNNNNNNGG	2 cut(s)	441, 780
AflIII	ACRYGT	1 cut(s)	65
AgsI	TTSAA	4 cut(s)	103, 218, 466, 476
AjnI	CCWGG	1 cut(s)	507
AluBI	AGCT	6 cut(s)	25, 135, 207, 290, 425, 786
AluI	AGCT	6 cut(s)	25, 135, 207, 290, 425, 786
Alw21I	GWGCWC	1 cut(s)	539
AlwI	GGATC	1 cut(s)	250
Aor13HI	TCCGGA	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	404
ApoI	RAATTY	3 cut(s)	13, 103, 154
AspLEI	GCGC	1 cut(s)	404
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	3 cut(s)	649, 763, 813
AvaII	GGWCC	1 cut(s)	72
BbsI	GAAGAC	1 cut(s)	798
Bbv12I	GWGCWC	1 cut(s)	539
BbvI	GCAGC	1 cut(s)	391
BccI	CCATC	5 cut(s)	45, 49, 380, 536, 755
BceAI	ACGGC	2 cut(s)	256, 374
BciT130I	CCWGG	1 cut(s)	509
BciVI	GTATCC	2 cut(s)	697, 738
BclI	TGATCA	1 cut(s)	453
BfmI	CTRYAG	3 cut(s)	261, 405, 618
BfoI	RGCGCY	1 cut(s)	405
BfuI	GTATCC	2 cut(s)	697, 738
BisI	GCNGC	1 cut(s)	405
BlsI	GCNGC	1 cut(s)	406
BmcAI	AGTACT	2 cut(s)	227, 666
Bme1390I	CCNGG	1 cut(s)	509
Bme18I	GGWCC	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	244, 792
BmrFI	CCNGG	1 cut(s)	509
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	1 cut(s)	827
BmuI	ACTGGG	1 cut(s)	238
BoxI	GACNNNNGTC	1 cut(s)	491
BpiI	GAAGAC	1 cut(s)	798
BpmI	CTGGAG	2 cut(s)	600, 785
BsaBI	GATNNNNATC	1 cut(s)	371
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	343, 507
BsaWI	WCCGGW	1 cut(s)	245
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	2 cut(s)	441, 780
Bse1I	ACTGG	2 cut(s)	233, 802
Bse8I	GATNNNNATC	1 cut(s)	371
BseAI	TCCGGA	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	509
BseDI	CCNNGG	2 cut(s)	343, 507
BseGI	GGATG	3 cut(s)	56, 60, 747
BseJI	GATNNNNATC	1 cut(s)	371
BseLI	CCNNNNNNNGG	2 cut(s)	441, 780
BseMII	CTCAG	2 cut(s)	300, 365
BseNI	ACTGG	2 cut(s)	233, 802
BseRI	GAGGAG	4 cut(s)	744, 747, 750, 753
BseXI	GCAGC	1 cut(s)	391
Bsh1285I	CGRYCG	1 cut(s)	343
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	539
BsiSI	CCGG	2 cut(s)	112, 246
BslI	CCNNNNNNNGG	2 cut(s)	441, 780
BsmI	GAATGC	2 cut(s)	166, 512
Bsp1286I	GDGCHC	1 cut(s)	539
Bsp13I	TCCGGA	1 cut(s)	245
Bsp143I	GATC	3 cut(s)	255, 453, 622
BspACI	CCGC	3 cut(s)	109, 210, 529
BspCNI	CTCAG	2 cut(s)	299, 364
BspEI	TCCGGA	1 cut(s)	245
BspHI	TCATGA	2 cut(s)	483, 516
BspLI	GGNNCC	2 cut(s)	244, 792
BspMAI	CTGCAG	1 cut(s)	409
BspPI	GGATC	1 cut(s)	250
BspQI	GCTCTTC	1 cut(s)	527
BsrI	ACTGG	2 cut(s)	233, 802
BssECI	CCNNGG	2 cut(s)	343, 507
BssMI	GATC	3 cut(s)	255, 453, 622
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	509
Bst4CI	ACNGT	2 cut(s)	490, 835
Bst6I	CTCTTC	2 cut(s)	527, 707
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	2 cut(s)	286, 351
BstF5I	GGATG	3 cut(s)	56, 60, 747
BstH2I	RGCGCY	1 cut(s)	405
BstHHI	GCGC	1 cut(s)	404
BstKTI	GATC	3 cut(s)	258, 456, 625
BstMBI	GATC	3 cut(s)	255, 453, 622
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	5 cut(s)	117, 287, 605, 740, 783
BstNI	CCWGG	1 cut(s)	509
BstNSI	RCATGY	1 cut(s)	69
BstPAI	GACNNNNGTC	1 cut(s)	491
BstSCI	CCNGG	1 cut(s)	507
BstSFI	CTRYAG	3 cut(s)	261, 405, 618
BstV1I	GCAGC	1 cut(s)	391
BstV2I	GAAGAC	1 cut(s)	798
BsuI	GTATCC	2 cut(s)	697, 738
BtsCI	GGATG	3 cut(s)	56, 60, 747
BtsIMutI	CAGTG	1 cut(s)	831
CciI	TCATGA	2 cut(s)	483, 516
CfoI	GCGC	1 cut(s)	404
Cfr13I	GGNCC	1 cut(s)	72
Csp6I	GTAC	2 cut(s)	226, 665
CviAII	CATG	6 cut(s)	46, 66, 484, 517, 526, 706
CviQI	GTAC	2 cut(s)	226, 665
DdeI	CTNAG	2 cut(s)	286, 351
DpnI	GATC	3 cut(s)	257, 455, 624
DpnII	GATC	3 cut(s)	255, 453, 622
Eam1104I	CTCTTC	2 cut(s)	527, 707
EarI	CTCTTC	2 cut(s)	527, 707
EciI	GGCGGA	1 cut(s)	98
Eco32I	GATATC	1 cut(s)	681
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	2 cut(s)	5, 187
EcoRI	GAATTC	1 cut(s)	13
EcoRII	CCWGG	1 cut(s)	507
EcoRV	GATATC	1 cut(s)	681
FaeI	CATG	6 cut(s)	49, 69, 487, 520, 529, 709
FalI	AAGNNNNNCTT	2 cut(s)	770, 802
FatI	CATG	6 cut(s)	45, 65, 483, 516, 525, 705
FbaI	TGATCA	1 cut(s)	453
Fnu4HI	GCNGC	1 cut(s)	405
FokI	GGATG	3 cut(s)	63, 67, 734
Fsp4HI	GCNGC	1 cut(s)	405
GlaI	GCGC	1 cut(s)	403
GluI	GCNGC	1 cut(s)	405
GsuI	CTGGAG	2 cut(s)	600, 785
HaeII	RGCGCY	1 cut(s)	405
HapII	CCGG	2 cut(s)	112, 246
HhaI	GCGC	1 cut(s)	404
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	6 cut(s)	49, 69, 487, 520, 529, 709
Hin6I	GCGC	1 cut(s)	402
HinP1I	GCGC	1 cut(s)	402
HincII	GTYRAC	1 cut(s)	713
HindII	GTYRAC	1 cut(s)	713
HinfI	GANTC	3 cut(s)	42, 546, 629
HpaII	CCGG	2 cut(s)	112, 246
HphI	GGTGA	3 cut(s)	649, 763, 813
Hpy166II	GTNNAC	2 cut(s)	640, 713
Hpy188I	TCNGA	3 cut(s)	354, 377, 839
Hpy188III	TCNNGA	5 cut(s)	246, 484, 517, 579, 626
Hpy8I	GTNNAC	2 cut(s)	640, 713
Hpy99I	CGWCG	2 cut(s)	10, 80
HpyAV	CCTTC	1 cut(s)	349
HpyCH4III	ACNGT	2 cut(s)	490, 835
HpyCH4V	TGCA	3 cut(s)	332, 407, 599
HpyF10VI	GCNNNNNNNGC	5 cut(s)	117, 287, 605, 740, 783
HpyF3I	CTNAG	2 cut(s)	286, 351
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	6 cut(s)	49, 69, 487, 520, 529, 709
HspAI	GCGC	1 cut(s)	402
Kpn2I	TCCGGA	1 cut(s)	245
Ksp22I	TGATCA	1 cut(s)	453
Kzo9I	GATC	3 cut(s)	255, 453, 622
LguI	GCTCTTC	1 cut(s)	527
LmnI	GCTCC	4 cut(s)	212, 248, 783, 790
Lsp1109I	GCAGC	1 cut(s)	391
LweI	GCATC	1 cut(s)	827
MaeIII	GTNAC	1 cut(s)	586
MalI	GATC	3 cut(s)	257, 455, 624
MboI	GATC	3 cut(s)	255, 453, 622
MboII	GAAGA	5 cut(s)	162, 544, 694, 798, 801
MhlI	GDGCHC	1 cut(s)	539
MlyI	GAGTC	1 cut(s)	51
MnlI	CCTC	8 cut(s)	206, 338, 575, 762, 765, 768, 771, 774
MroI	TCCGGA	1 cut(s)	245
MseI	TTAA	1 cut(s)	302
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	2 cut(s)	112, 246
MspR9I	CCNGG	1 cut(s)	509
Mva1269I	GAATGC	2 cut(s)	166, 512
MvaI	CCWGG	1 cut(s)	509
MwoI	GCNNNNNNNGC	5 cut(s)	117, 287, 605, 740, 783
NdeII	GATC	3 cut(s)	255, 453, 622
NlaIII	CATG	6 cut(s)	49, 69, 487, 520, 529, 709
NlaIV	GGNNCC	2 cut(s)	244, 792
NmuCI	GTSAC	1 cut(s)	586
NspI	RCATGY	1 cut(s)	69
PagI	TCATGA	2 cut(s)	483, 516
PciI	ACATGT	1 cut(s)	65
PciSI	GCTCTTC	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	381
PctI	GAATGC	2 cut(s)	166, 512
PfeI	GAWTC	2 cut(s)	546, 629
PkrI	GCNGC	1 cut(s)	406
PleI	GAGTC	1 cut(s)	50
PpsI	GAGTC	1 cut(s)	50
PscI	ACATGT	1 cut(s)	65
PshAI	GACNNNNGTC	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	507
PspGI	CCWGG	1 cut(s)	507
PspN4I	GGNNCC	2 cut(s)	244, 792
PspPI	GGNCC	1 cut(s)	72
PstI	CTGCAG	1 cut(s)	409
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	2 cut(s)	227, 666
RsaNI	GTAC	2 cut(s)	226, 665
SapI	GCTCTTC	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	1 cut(s)	405
Sau3AI	GATC	3 cut(s)	255, 453, 622
Sau96I	GGNCC	1 cut(s)	72
ScaI	AGTACT	2 cut(s)	227, 666
SchI	GAGTC	1 cut(s)	51
ScrFI	CCNGG	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	539
SetI	ASST	7 cut(s)	27, 137, 209, 292, 360, 427, 788
SfaNI	GCATC	1 cut(s)	827
SfcI	CTRYAG	3 cut(s)	261, 405, 618
SinI	GGWCC	1 cut(s)	72
SsiI	CCGC	3 cut(s)	109, 210, 529
SspI	AATATT	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	507
TaaI	ACNGT	2 cut(s)	490, 835
TaqI	TCGA	1 cut(s)	138
TaqII	GACCGA	1 cut(s)	357
TatI	WGTACW	2 cut(s)	225, 664
TfiI	GAWTC	2 cut(s)	546, 629
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	838
TseFI	GTSAC	1 cut(s)	586
TseI	GCWGC	1 cut(s)	404
Tsp45I	GTSAC	1 cut(s)	586
TspDTI	ATGAA	6 cut(s)	472, 505, 514, 533, 694, 801
TspGWI	ACGGA	1 cut(s)	64
TspRI	CASTG	1 cut(s)	838
VpaK11BI	GGWCC	1 cut(s)	72
XapI	RAATTY	3 cut(s)	13, 103, 154
XceI	RCATGY	1 cut(s)	69
XcmI	CCANNNNNNNNNTGG	1 cut(s)	438
ZrmI	AGTACT	2 cut(s)	227, 666

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.